Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000420.1

Orthogroup ID

OG0016965

Physical Location & Seq

Genomic Coordinates Reverse (-)

34442 .. 35005

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000420.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgataagcacatcatggggtgcccccgctgctttcaccaaaggtttcaaccttcagcatgtctctgatggtctctatgggaggcatcttcatgtctacagttggcctgagggtgaattgaaacaaactttggatcttggcaatgcagggctcttacccttggaggcgatagaggctgataatgttatgggctcaagtagggttgatgaatttgctgaacctgttttacaatatggacacaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0000302 GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006790 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010197 GO:0010269 GO:0016043 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071291 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP56

Protein Analysis

81

Amino Acids

8.9

Weight (kDa)

5.09

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016965)

Species	Orthologous Gene IDs
pyrus_communis	pycom12401g00260
rosa_chinensis	RchiOBHm_Chr6g0281301 RchiOBHm_Chr7g0214141
rosa_multiflora	Rmu_sc0000650.1_g000021 Rmu_sc0001397.1_g000001 Rmu_ssc0000420.1_g000007
rosa_rugosa	Rorug03G0054400
rosa_samantha	Rh1CG223200 Rh4BG158500 Rh6BG016200 Rh6DG246900
rosa_wichuraiana	Rw0G023330 Rw3G011350 Rw7G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	49, 121
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
Alw26I	GTCTC	2 cut(s)	67, 77
AlwI	GGATC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	28, 125
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	153, 194
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	67, 77
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	22
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	159
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	67, 77
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	25, 153, 194
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	2 cut(s)	67, 77
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 173
BstNSI	RCATGY	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	106
CviAII	CATG	3 cut(s)	15, 59, 92
CviJI	RGCY	4 cut(s)	106, 151, 176, 192
CviKI_1	RGCY	4 cut(s)	106, 151, 176, 192
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	153, 194
Eco31I	GGTCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	153, 194
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	18, 62, 95
FaiI	YATR	6 cut(s)	16, 60, 78, 93, 188, 234
FatI	CATG	3 cut(s)	14, 58, 91
FauI	CCCGC	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	30
FriOI	GRGCYC	2 cut(s)	153, 194
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	18, 62, 95
HphI	GGTGA	2 cut(s)	28, 125
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 173
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	18, 62, 95
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	4 cut(s)	120, 132, 226, 234
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	94
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	3 cut(s)	25, 153, 194
MluCI	AATT	2 cut(s)	116, 209
MnlI	CCTC	4 cut(s)	75, 103, 157, 166
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	29, 173
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	18, 62, 95
NlaIV	GGNNCC	1 cut(s)	22
NspI	RCATGY	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	22
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
PsuI	RGATCY	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	90
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	133
SduI	GDGCHC	3 cut(s)	25, 153, 194
SetI	ASST	4 cut(s)	46, 54, 223, 245
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	116, 209
SsiI	CCGC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	101
TasI	AATT	2 cut(s)	116, 209
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	80, 222
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.