Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016965

Physical Location & Seq

Genomic Coordinates Forward (+)

2317874 .. 2320926

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG016200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTTTAGTTTGATTTCTCTCTCTATTTTACTATCTTCTGTGAAGAGTGGTTATATGGAAGAACTTGGGGAGCTTTTGTCTCCAGCCGATTACTACGATATTCTTCTGAGTTCTGACTTTACTTTTGTATGTTTCATTTTCAGCTCTTCGTTGGACAAGTCTCCTGTGATTGAGGTTGATAATGTTATGGGCTCAAGCAGGGTTGATGAAGATGCTGAACCTGTTTTACAATATGGACATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

81

Amino Acids

9.01

Weight (kDa)

4.05

Isoelectric Point (pI)

65.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016965)

Species	Orthologous Gene IDs
pyrus_communis	pycom12401g00260
rosa_chinensis	RchiOBHm_Chr6g0281301 RchiOBHm_Chr7g0214141
rosa_multiflora	Rmu_sc0000650.1_g000021 Rmu_sc0001397.1_g000001 Rmu_ssc0000420.1_g000007
rosa_rugosa	Rorug03G0054400
rosa_samantha	Rh1CG223200 Rh4BG158500 Rh6BG016200 Rh6DG246900
rosa_wichuraiana	Rw0G023330 Rw3G011350 Rw7G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	2 cut(s)	73, 144
AluI	AGCT	2 cut(s)	73, 144
Alw26I	GTCTC	2 cut(s)	84, 165
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
BanII	GRGCYC	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	84, 165
BmsI	GCATC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
BseMII	CTCAG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	84, 165
Bsp1286I	GDGCHC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	38, 151
BstDEI	CTNAG	1 cut(s)	107
BstMAI	GTCTC	2 cut(s)	84, 165
CviJI	RGCY	4 cut(s)	73, 86, 144, 192
CviKI_1	RGCY	4 cut(s)	73, 86, 144, 192
DdeI	CTNAG	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	38, 151
EarI	CTCTTC	2 cut(s)	38, 151
Eco24I	GRGCYC	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	194
FaiI	YATR	6 cut(s)	54, 56, 130, 188, 234, 240
FriOI	GRGCYC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	66
Hpy188I	TCNGA	2 cut(s)	108, 115
HpyF3I	CTNAG	1 cut(s)	107
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	4 cut(s)	96, 177, 184, 234
LweI	GCATC	1 cut(s)	202
MboII	GAAGA	6 cut(s)	27, 55, 71, 95, 138, 221
MhlI	GDGCHC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	151
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
SapI	GCTCTTC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	5 cut(s)	75, 146, 177, 223, 245
SfaNI	GCATC	1 cut(s)	202
SgeI	CNNG	7 cut(s)	77, 95, 169, 176, 207, 211, 233
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	124, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.