Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0016965

Physical Location & Seq

Genomic Coordinates Forward (+)

28563260 .. 28595719

Gene Structure 32460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG158500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCTCTGTGCCGGAGGTTTTGGACTGTGCTGCGGAGGCACCGTCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAAGGTGATAGAGGCTGATAATGTTATGGGCTCAAGTAGGGTTGATGAAGATGCTGAACCCATTTTACAATATGGACACAGGAAATTAAATTGTTATTATGAACATCCAAAACTATCAAATAATTTTATAAGTGTCAATATGGATCTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

79

Amino Acids

8.6

Weight (kDa)

5.07

Isoelectric Point (pI)

20.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep_UGP3_C	PF25441	31 - 75	9.6e-06	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016965)

Species	Orthologous Gene IDs
pyrus_communis	pycom12401g00260
rosa_chinensis	RchiOBHm_Chr6g0281301 RchiOBHm_Chr7g0214141
rosa_multiflora	Rmu_sc0000650.1_g000021 Rmu_sc0001397.1_g000001 Rmu_ssc0000420.1_g000007
rosa_rugosa	Rorug03G0054400
rosa_samantha	Rh1CG223200 Rh4BG158500 Rh6BG016200 Rh6DG246900
rosa_wichuraiana	Rw0G023330 Rw3G011350 Rw7G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	38
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	3 cut(s)	27, 43, 60
BstBAI	YACGTR	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	190
CviJI	RGCY	2 cut(s)	101, 117
CviKI_1	RGCY	2 cut(s)	101, 117
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	49
FaiI	YATR	5 cut(s)	113, 159, 186, 215, 227
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	31
HapII	CCGG	1 cut(s)	12
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	103
HpyCH4III	ACNGT	3 cut(s)	27, 43, 60
HpyCH4IV	ACGT	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	4 cut(s)	25, 33, 93, 151
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	236
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	3 cut(s)	170, 175, 208
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	8, 29, 91
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	36
NdeII	GATC	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	32
Ppu21I	YACGTR	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	40
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
PsuI	RGATCY	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	3 cut(s)	19, 93, 239
SfaNI	GCATC	1 cut(s)	127
SgeI	CNNG	5 cut(s)	24, 60, 92, 132, 178
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	170, 175, 208
SsiI	CCGC	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	27, 43, 60
TaiI	ACGT	1 cut(s)	239
TasI	AATT	3 cut(s)	170, 175, 208
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	147, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.