Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009307

Physical Location & Seq

Genomic Coordinates Forward (+)

57744195 .. 57746144

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGAAATGGAGCAGCTGTTAAGCATGGGCTTCCCCACCGACCTCGCCGCTGAAGCCCTCGCCGCCACCGGCGGCAACTCCGCTCTCAAAGCCACCGATTGGATTCTCAACCGCAATTCCTCCACCACCTCCACCTCCACTCCCACCGCCACCTCTCAACCCAAACTCGATCGCTTCTTCCTCTCCCAATCCACCCCCTCCTCAAATTCACAATCCCAAGACAAACAAGAACCAGAAGAACAACAGTCCACCCCAACCTCCCAACTCCCCAAGCGCCGCAAACTTCTCGTCCCGGAAACCCCGCCGCCCACTACCTCCGATAAACCCGCAACCGCCGCGGCCCACCACCAGCCCTTGTCGGAGCGCATGCGGCCCAGGACCCTAAACGACGTCGTCGGCCAGGACCACCTCCTCGCCCCAAACTCCCTCCTCCGCTCCGCTATCAAATGCGAGCGTCTCCCTTCTCTCGTCTTCTGGGGCCCACCCGGCACCGGCAAGACCTCCATCGCCAAAGCCATCATCAACTCCGCCTCCTCCGCCGCCTCCCGGCCCTACCGGTTCGTCTCGCTCTCCGCCGTCACCGCCGGCGTCAAAGACGTCAGGGAAGCCATCGACGAGGCCCGGAAGAGGAAGAAGCTGAACGGCCAGAGGACCGTTCTCTTCATCGACGAGGTTCACAGGTTCAACAAATCGCAGCAGGACTCTTTCTTGCCGGTGATCGAAGACGGCAGCATAGTCTTCATGGGCGCCACCACTGAGAACCCTTCGTTCCATTTGATCACGCCGCTCTTGTCTAGGTCTCGAGTTCTTGATCTTCGACCCTTGAGCCCACAATATATAGAGGTTCTTCTCCGGCGAGCGGCGGAAAACTCGGAAATCGGATTGTCTCGGAGTGTGGGGATGCAAGTAGATGTGGAGGAGGAAGTCATTCGTTTTATCTCCGCCAATTGCGACGGTGATGCTAGAGTGGCACTCAATGCATTGGAAATCTCAGCTACAACAGCAGCTGCCCGAGCCTCGACGCCGGATTCAGTAGCTGGTGTTACCGTGGAGGATGCCAAGGAAGCACTGCAATGCAAGCATGTGGCTTCGGACAAAGCAGGGGAAGAGCACTACAACCTCATCAGTGCGCTTCACAAGTCTATGAGAGGAAGTGATGCCAATGCTGCTATTTATTGGCTGGCAAGGATGCTTGAGGGAGGGCAGGAGCCTCTGTACATTGCGCGCCGGCTCGTAAGGTTTGCCAGCGAAGATGTGGGGCTGGCGGACCCATTGGCGCTTAATCAAGCTGTGGCTTGTTACCAAGCTTGTCACTTTATTGGAATGCCAGAGTGCAATGTGATTCTTGCACAGTGTGTGGCTTACTTGGCTTTGGCTCCAAAGTCGATTGCTGTTTATAAAGCAATGAATAGTGCAGCAGAAGTGGTGAGGAGTTCAGTTGGACAGAATGAGGGGGTGCCTCTTCATCTCAGGAATGCACCGACTAAGCTGATGAAGGATTTTGGGTATGGGAAAGGATATATATACACTCCTGACAATCCCTCTGCAGAACAGAGATTTCTACCGCCATCACTTGAAGGTTACAAGTTTCTGGATTGGCCAATCAGTAATAACACTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

541

Amino Acids

58.79

Weight (kDa)

6.58

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	3 - 38	3.1e-08	UBA-like domain
RuvB_N	PF05496	123 - 246	6.6e-10	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	157 - 268	2.5e-17	ATPase family associated with various cellular activities (AAA)
AAA_assoc_2	PF16193	302 - 383	2.8e-24	AAA C-terminal domain
MgsA_C	PF12002	384 - 530	2.9e-56	MgsA AAA+ ATPase C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24290
fragaria_vesca	FvH4_5g33930 FvH4_5g33930
malus_domestica	MD03G1299000.v1.1
pyrus_communis	pycom03g23710
rosa_chinensis	RchiOBHm_Chr7g0233321
rosa_laevigata	RLG00000001279
rosa_multiflora	Rmu_sc0000863.1_g000006 Rmu_sc0000863.1_g000007 Rmu_sc0000863.1_g000049 Rmu_sc0003865.1_g000005 Rmu_sc0010461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227410
rosa_rugosa	Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh7AG435800 Rh7BG408100 Rh7BG408500 Rh7CG455000 Rh7DG424500 Rh7DG424900
rosa_wichuraiana	Rw7G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1398
AatII	GACGTC	2 cut(s)	393, 600
AccB1I	GGYRCC	3 cut(s)	488, 746, 1456
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccBSI	CCGCTC	4 cut(s)	83, 435, 787, 860
AccII	CGCG	2 cut(s)	338, 1225
AcoI	YGGCCR	3 cut(s)	397, 643, 1598
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	5 cut(s)	390, 588, 597, 747, 1022
AdeI	CACNNNGTG	1 cut(s)	1355
AfaI	GTAC	1 cut(s)	1217
AfiI	CCNNNNNNNGG	5 cut(s)	99, 491, 546, 627, 859
AgeI	ACCGGT	1 cut(s)	555
AgsI	TTSAA	2 cut(s)	685, 1577
AjnI	CCWGG	2 cut(s)	374, 399
AluBI	AGCT	8 cut(s)	16, 637, 995, 1007, 1037, 1289, 1307, 1489
AluI	AGCT	8 cut(s)	16, 637, 995, 1007, 1037, 1289, 1307, 1489
Alw21I	GWGCWC	1 cut(s)	1113
Alw26I	GTCTC	4 cut(s)	461, 568, 804, 891
AlwNI	CAGNNNCTG	2 cut(s)	1007, 1037
Ama87I	CYCGRG	2 cut(s)	801, 1011
AoxI	GGCC	8 cut(s)	339, 371, 397, 478, 548, 618, 643, 1598
ApaI	GGGCCC	1 cut(s)	482
ApeKI	GCWGC	7 cut(s)	13, 694, 729, 1004, 1007, 1166, 1415
ApoI	RAATTY	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AsiGI	ACCGGT	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	927
AspLEI	GCGC	7 cut(s)	276, 366, 749, 1132, 1225, 1227, 1279
AsuC2I	CCSGG	4 cut(s)	293, 486, 547, 622
AsuHPI	GGTGA	4 cut(s)	571, 727, 968, 1438
AvaI	CYCGRG	2 cut(s)	801, 1011
AvaII	GGWCC	4 cut(s)	378, 403, 651, 1267
BaeGI	GKGCMC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	1600
BanI	GGYRCC	3 cut(s)	488, 746, 1456
BanII	GRGCYC	2 cut(s)	482, 830
BbsI	GAAGAC	3 cut(s)	463, 729, 730
Bbv12I	GWGCWC	1 cut(s)	1113
BbvI	GCAGC	7 cut(s)	25, 706, 741, 994, 1016, 1153, 1427
BccI	CCATC	5 cut(s)	512, 524, 617, 1576, 1613
BceAI	ACGGC	3 cut(s)	560, 658, 742
BcgI	CGANNNNNNTGC	4 cut(s)	268, 302, 941, 975
BciT130I	CCWGG	2 cut(s)	376, 401
BclI	TGATCA	1 cut(s)	777
BcnI	CCSGG	4 cut(s)	293, 486, 547, 622
BcoDI	GTCTC	4 cut(s)	461, 568, 804, 891
BfaI	CTAG	2 cut(s)	795, 963
BfmI	CTRYAG	1 cut(s)	1545
BfoI	RGCGCY	3 cut(s)	277, 750, 1280
BglI	GCCNNNNNGGC	1 cut(s)	486
Bme1390I	CCNGG	6 cut(s)	293, 376, 401, 486, 547, 622
Bme18I	GGWCC	4 cut(s)	378, 403, 651, 1267
BmeT110I	CYCGRG	2 cut(s)	801, 1011
BmiI	GGNNCC	9 cut(s)	380, 479, 480, 490, 748, 1209, 1269, 1377, 1458
BmrFI	CCNGG	6 cut(s)	293, 376, 401, 486, 547, 622
BmsI	GCATC	5 cut(s)	891, 949, 1045, 1147, 1179
BpiI	GAAGAC	3 cut(s)	463, 729, 730
BplI	GAGNNNNNCTC	2 cut(s)	957, 989
BpuEI	CTTGAG	2 cut(s)	844, 1214
BpuMI	CCSGG	4 cut(s)	293, 486, 547, 622
BsaHI	GRCGYC	5 cut(s)	390, 588, 597, 747, 1022
BsaI	GGTCTC	1 cut(s)	804
BsaJI	CCNNGG	4 cut(s)	336, 374, 1047, 1059
BsaWI	WCCGGW	1 cut(s)	555
BsaXI	ACNNNNNCTCC	7 cut(s)	32, 124, 154, 515, 545, 1199, 1229
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 491, 546, 627, 859
Bse118I	RCCGGY	6 cut(s)	68, 491, 555, 584, 712, 1227
Bse3DI	GCAATG	4 cut(s)	1079, 1218, 1342, 1410
BseBI	CCWGG	2 cut(s)	376, 401
BseDI	CCNNGG	4 cut(s)	336, 374, 1047, 1059
BseGI	GGATG	3 cut(s)	906, 1060, 1194
BseLI	CCNNNNNNNGG	5 cut(s)	99, 491, 546, 627, 859
BseMI	GCAATG	4 cut(s)	1079, 1218, 1342, 1410
BseMII	CTCAG	3 cut(s)	747, 1005, 1483
BsePI	GCGCGC	1 cut(s)	1223
BseRI	GAGGAG	6 cut(s)	190, 401, 419, 523, 932, 1444
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	7 cut(s)	25, 706, 741, 994, 1016, 1153, 1427
BsgI	GTGCAG	1 cut(s)	1434
Bsh1236I	CGCG	2 cut(s)	338, 1225
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	8 cut(s)	341, 373, 399, 480, 550, 620, 645, 1600
BshNI	GGYRCC	3 cut(s)	488, 746, 1456
BshTI	ACCGGT	1 cut(s)	555
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	1113
BsiHKCI	CYCGRG	2 cut(s)	801, 1011
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	5 cut(s)	99, 491, 546, 627, 859
BsmAI	GTCTC	4 cut(s)	461, 568, 804, 891
BsmBI	CGTCTC	2 cut(s)	461, 568
BsmFI	GGGAC	1 cut(s)	275
BsmI	GAATGC	2 cut(s)	1329, 1480
BsnI	GGCC	8 cut(s)	341, 373, 399, 480, 550, 620, 645, 1600
Bso31I	GGTCTC	1 cut(s)	804
BsoBI	CYCGRG	2 cut(s)	801, 1011
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	3 cut(s)	482, 830, 1113
Bsp1407I	TGTACA	1 cut(s)	1215
Bsp143I	GATC	4 cut(s)	169, 717, 777, 811
BspANI	GGCC	8 cut(s)	341, 373, 399, 480, 550, 620, 645, 1600
BspCNI	CTCAG	3 cut(s)	748, 1004, 1482
BspFNI	CGCG	2 cut(s)	338, 1225
BspLI	GGNNCC	9 cut(s)	380, 479, 480, 490, 748, 1209, 1269, 1377, 1458
BspMAI	CTGCAG	1 cut(s)	1549
BspQI	GCTCTTC	1 cut(s)	1101
BspT107I	GGYRCC	3 cut(s)	488, 746, 1456
BspTNI	GGTCTC	1 cut(s)	804
BsrBI	CCGCTC	4 cut(s)	83, 435, 787, 860
BsrDI	GCAATG	4 cut(s)	1079, 1218, 1342, 1410
BsrFI	RCCGGY	6 cut(s)	68, 491, 555, 584, 712, 1227
BsrGI	TGTACA	1 cut(s)	1215
BssAI	RCCGGY	6 cut(s)	68, 491, 555, 584, 712, 1227
BssECI	CCNNGG	4 cut(s)	336, 374, 1047, 1059
BssHII	GCGCGC	1 cut(s)	1223
BssMI	GATC	4 cut(s)	169, 717, 777, 811
BssNI	GRCGYC	5 cut(s)	390, 588, 597, 747, 1022
BssT1I	CCWWGG	1 cut(s)	1059
Bst2UI	CCWGG	2 cut(s)	376, 401
Bst4CI	ACNGT	5 cut(s)	246, 655, 956, 1048, 1353
Bst6I	CTCTTC	4 cut(s)	620, 665, 1101, 1467
BstACI	GRCGYC	5 cut(s)	390, 588, 597, 747, 1022
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstAUI	TGTACA	1 cut(s)	1215
BstDEI	CTNAG	4 cut(s)	756, 991, 1469, 1485
BstDSI	CCRYGG	2 cut(s)	336, 1047
BstF5I	GGATG	3 cut(s)	906, 1060, 1194
BstFNI	CGCG	2 cut(s)	338, 1225
BstH2I	RGCGCY	3 cut(s)	277, 750, 1280
BstHHI	GCGC	7 cut(s)	276, 366, 749, 1132, 1225, 1227, 1279
BstKTI	GATC	4 cut(s)	172, 720, 780, 814
BstMAI	GTCTC	4 cut(s)	461, 568, 804, 891
BstMBI	GATC	4 cut(s)	169, 717, 777, 811
BstMCI	CGRYCG	1 cut(s)	172
BstNI	CCWGG	2 cut(s)	376, 401
BstNSI	RCATGY	2 cut(s)	370, 1085
BstSCI	CCNGG	6 cut(s)	291, 374, 399, 484, 545, 620
BstSFI	CTRYAG	1 cut(s)	1545
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	2 cut(s)	338, 1225
BstV1I	GCAGC	7 cut(s)	25, 706, 741, 994, 1016, 1153, 1427
BstV2I	GAAGAC	3 cut(s)	463, 729, 730
BsuRI	GGCC	8 cut(s)	341, 373, 399, 480, 550, 620, 645, 1600
BtgI	CCRYGG	2 cut(s)	336, 1047
BtgZI	GCGATG	1 cut(s)	490
BtsCI	GGATG	3 cut(s)	906, 1060, 1194
BtsI	GCAGTG	1 cut(s)	1067
BtsIMutI	CAGTG	5 cut(s)	753, 1067, 1132, 1358, 1614
CaiI	CAGNNNCTG	2 cut(s)	1007, 1037
CfoI	GCGC	7 cut(s)	276, 366, 749, 1132, 1225, 1227, 1279
Cfr10I	RCCGGY	6 cut(s)	68, 491, 555, 584, 712, 1227
Cfr42I	CCGCGG	1 cut(s)	339
CseI	GACGC	3 cut(s)	443, 577, 1030
Csp6I	GTAC	1 cut(s)	1216
CspAI	ACCGGT	1 cut(s)	555
CviAII	CATG	4 cut(s)	25, 367, 742, 1082
CviQI	GTAC	1 cut(s)	1216
DdeI	CTNAG	4 cut(s)	756, 991, 1469, 1485
DinI	GGCGCC	1 cut(s)	748
DpnI	GATC	4 cut(s)	171, 719, 779, 813
DpnII	GATC	4 cut(s)	169, 717, 777, 811
DraIII	CACNNNGTG	1 cut(s)	1355
EaeI	YGGCCR	3 cut(s)	397, 643, 1598
Eam1104I	CTCTTC	4 cut(s)	620, 665, 1101, 1467
EarI	CTCTTC	4 cut(s)	620, 665, 1101, 1467
EciI	GGCGGA	6 cut(s)	517, 526, 562, 878, 931, 1280
Eco130I	CCWWGG	1 cut(s)	1059
Eco24I	GRGCYC	2 cut(s)	482, 830
Eco31I	GGTCTC	1 cut(s)	804
Eco47I	GGWCC	4 cut(s)	378, 403, 651, 1267
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	801, 1011
EcoO109I	RGGNCCY	2 cut(s)	378, 478
EcoRII	CCWGG	2 cut(s)	374, 399
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT22I	ATGCAT	1 cut(s)	982
EcoT38I	GRGCYC	2 cut(s)	482, 830
EgeI	GGCGCC	1 cut(s)	748
EheI	GGCGCC	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	1059
Esp3I	CGTCTC	2 cut(s)	461, 568
FaeI	CATG	4 cut(s)	28, 370, 745, 1085
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	4 cut(s)	24, 366, 741, 1081
FauI	CCCGC	2 cut(s)	309, 334
FbaI	TGATCA	1 cut(s)	777
FokI	GGATG	3 cut(s)	913, 1067, 1201
FriOI	GRGCYC	2 cut(s)	482, 830
FspBI	CTAG	2 cut(s)	795, 963
GlaI	GCGC	7 cut(s)	275, 365, 748, 1131, 1224, 1226, 1278
HaeII	RGCGCY	3 cut(s)	277, 750, 1280
HaeIII	GGCC	8 cut(s)	341, 373, 399, 480, 550, 620, 645, 1600
HgaI	GACGC	3 cut(s)	443, 577, 1030
HhaI	GCGC	7 cut(s)	276, 366, 749, 1132, 1225, 1227, 1279
Hin1I	GRCGYC	5 cut(s)	390, 588, 597, 747, 1022
Hin1II	CATG	4 cut(s)	28, 370, 745, 1085
Hin6I	GCGC	7 cut(s)	274, 364, 747, 1130, 1223, 1225, 1277
HinP1I	GCGC	7 cut(s)	274, 364, 747, 1130, 1223, 1225, 1277
HindIII	AAGCTT	1 cut(s)	1305
HinfI	GANTC	4 cut(s)	103, 701, 1028, 1342
HphI	GGTGA	4 cut(s)	571, 727, 968, 1438
Hpy166II	GTNNAC	2 cut(s)	249, 676
Hpy188I	TCNGA	6 cut(s)	319, 361, 874, 881, 891, 1093
Hpy188III	TCNNGA	5 cut(s)	801, 809, 1471, 1532, 1592
Hpy8I	GTNNAC	2 cut(s)	249, 676
Hpy99I	CGWCG	7 cut(s)	392, 395, 398, 617, 671, 956, 1024
HpyAV	CCTTC	4 cut(s)	471, 774, 1489, 1571
HpyCH4III	ACNGT	5 cut(s)	246, 655, 956, 1048, 1353
HpyCH4IV	ACGT	2 cut(s)	390, 597
HpyCH4V	TGCA	9 cut(s)	904, 980, 1072, 1077, 1335, 1349, 1415, 1478, 1547
HpyF3I	CTNAG	4 cut(s)	756, 991, 1469, 1485
HpySE526I	ACGT	2 cut(s)	390, 597
Hsp92I	GRCGYC	5 cut(s)	390, 588, 597, 747, 1022
Hsp92II	CATG	4 cut(s)	28, 370, 745, 1085
HspAI	GCGC	7 cut(s)	274, 364, 747, 1130, 1223, 1225, 1277
KasI	GGCGCC	1 cut(s)	746
KroI	GCCGGC	2 cut(s)	584, 1227
KroNI	GCCGGC	2 cut(s)	586, 1229
Ksp22I	TGATCA	1 cut(s)	777
KspI	CCGCGG	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	169, 717, 777, 811
LguI	GCTCTTC	1 cut(s)	1101
LmnI	GCTCC	5 cut(s)	10, 361, 440, 1207, 1381
Lsp1109I	GCAGC	7 cut(s)	25, 706, 741, 994, 1016, 1153, 1427
LweI	GCATC	5 cut(s)	891, 949, 1045, 1147, 1179
MaeI	CTAG	2 cut(s)	795, 963
MaeII	ACGT	2 cut(s)	390, 597
MaeIII	GTNAC	5 cut(s)	577, 1042, 1298, 1310, 1580
MalI	GATC	4 cut(s)	171, 719, 779, 813
MbiI	CCGCTC	4 cut(s)	83, 435, 787, 860
MboI	GATC	4 cut(s)	169, 717, 777, 811
MfeI	CAATTG	1 cut(s)	946
MhlI	GDGCHC	3 cut(s)	482, 830, 1113
MlsI	TGGCCA	1 cut(s)	1600
MluCI	AATT	3 cut(s)	115, 205, 946
MluNI	TGGCCA	1 cut(s)	1600
Mly113I	GGCGCC	1 cut(s)	747
MlyI	GAGTC	1 cut(s)	695
MmeI	TCCRAC	2 cut(s)	339, 1420
Mox20I	TGGCCA	1 cut(s)	1600
Mph1103I	ATGCAT	1 cut(s)	982
MreI	CGCCGGCG	1 cut(s)	584
MroNI	GCCGGC	2 cut(s)	584, 1227
MroXI	GAANNNNTTC	1 cut(s)	927
MscI	TGGCCA	1 cut(s)	1600
MseI	TTAA	2 cut(s)	20, 1281
MslI	CAYNNNNRTG	1 cut(s)	1072
Msp20I	TGGCCA	1 cut(s)	1600
MspA1I	CMGCKG	4 cut(s)	16, 50, 338, 1007
MspR9I	CCNGG	6 cut(s)	293, 376, 401, 486, 547, 622
MunI	CAATTG	1 cut(s)	946
Mva1269I	GAATGC	2 cut(s)	1329, 1480
MvaI	CCWGG	2 cut(s)	376, 401
MvnI	CGCG	2 cut(s)	338, 1225
NaeI	GCCGGC	2 cut(s)	586, 1229
NarI	GGCGCC	1 cut(s)	747
NciI	CCSGG	4 cut(s)	293, 486, 547, 622
NdeII	GATC	4 cut(s)	169, 717, 777, 811
NgoMIV	GCCGGC	2 cut(s)	584, 1227
NlaIII	CATG	4 cut(s)	28, 370, 745, 1085
NlaIV	GGNNCC	9 cut(s)	380, 479, 480, 490, 748, 1209, 1269, 1377, 1458
NmuCI	GTSAC	2 cut(s)	577, 1310
NsiI	ATGCAT	1 cut(s)	982
NspI	RCATGY	2 cut(s)	370, 1085
PaeI	GCATGC	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	801
PauI	GCGCGC	1 cut(s)	1223
PciSI	GCTCTTC	1 cut(s)	1101
PctI	GAATGC	2 cut(s)	1329, 1480
PdiI	GCCGGC	2 cut(s)	586, 1229
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	3 cut(s)	103, 1028, 1342
PflFI	GACNNNGTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	291
PinAI	ACCGGT	1 cut(s)	555
Ple19I	CGATCG	1 cut(s)	172
PleI	GAGTC	1 cut(s)	695
PluTI	GGCGCC	1 cut(s)	750
PpsI	GAGTC	1 cut(s)	695
PpuMI	RGGWCCY	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	1398
Psp5II	RGGWCCY	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	374, 399
PspGI	CCWGG	2 cut(s)	374, 399
PspN4I	GGNNCC	9 cut(s)	380, 479, 480, 490, 748, 1209, 1269, 1377, 1458
PspOMI	GGGCCC	1 cut(s)	478
PspPPI	RGGWCCY	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	1549
PstNI	CAGNNNCTG	2 cut(s)	1007, 1037
PsyI	GACNNNGTC	1 cut(s)	392
PteI	GCGCGC	1 cut(s)	1223
PvuI	CGATCG	1 cut(s)	172
PvuII	CAGCTG	2 cut(s)	16, 1007
RsaI	GTAC	1 cut(s)	1217
RsaNI	GTAC	1 cut(s)	1216
RseI	CAYNNNNRTG	1 cut(s)	1072
SacII	CCGCGG	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	1101
SaqAI	TTAA	2 cut(s)	20, 1281
Sau3AI	GATC	4 cut(s)	169, 717, 777, 811
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	6 cut(s)	293, 376, 401, 486, 547, 622
SduI	GDGCHC	3 cut(s)	482, 830, 1113
SfaNI	GCATC	5 cut(s)	891, 949, 1045, 1147, 1179
SfcI	CTRYAG	1 cut(s)	1545
SfoI	GGCGCC	1 cut(s)	748
Sfr274I	CTCGAG	1 cut(s)	801
Sfr303I	CCGCGG	1 cut(s)	339
SgrAI	CRCCGGYG	2 cut(s)	68, 584
SgrBI	CCGCGG	1 cut(s)	339
SinI	GGWCC	4 cut(s)	378, 403, 651, 1267
SlaI	CTCGAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	1072
SmlI	CTYRAG	3 cut(s)	801, 823, 1193
SmoI	CTYRAG	3 cut(s)	801, 823, 1193
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	3 cut(s)	115, 205, 946
SspDI	GGCGCC	1 cut(s)	746
SspMI	CTAG	2 cut(s)	795, 963
StyD4I	CCNGG	6 cut(s)	291, 374, 399, 484, 545, 620
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	5 cut(s)	246, 655, 956, 1048, 1353
TaiI	ACGT	2 cut(s)	393, 600
TaqI	TCGA	8 cut(s)	168, 612, 666, 720, 802, 817, 1019, 1385
TasI	AATT	3 cut(s)	115, 205, 946
TatI	WGTACW	1 cut(s)	1215
TfiI	GAWTC	3 cut(s)	103, 1028, 1342
Tru1I	TTAA	2 cut(s)	20, 1281
Tru9I	TTAA	2 cut(s)	20, 1281
TscAI	CASTG	5 cut(s)	760, 1074, 1132, 1358, 1621
TseFI	GTSAC	2 cut(s)	577, 1310
TseI	GCWGC	7 cut(s)	13, 694, 729, 1004, 1007, 1166, 1415
Tsp45I	GTSAC	2 cut(s)	577, 1310
TspDTI	ATGAA	5 cut(s)	652, 730, 1421, 1454, 1508
TspRI	CASTG	5 cut(s)	760, 1074, 1132, 1358, 1621
Tth111I	GACNNNGTC	1 cut(s)	392
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	4 cut(s)	378, 403, 651, 1267
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	2 cut(s)	370, 1085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1252
XhoI	CTCGAG	1 cut(s)	801
XmnI	GAANNNNTTC	1 cut(s)	927
XspI	CTAG	2 cut(s)	795, 963
ZraI	GACGTC	2 cut(s)	391, 598
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.