Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Forward (+)

27048507 .. 27051569

Gene Structure 3063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0279900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGAACTCTAGCCTCGACAACAATGCACTGGGTGACAGTGTGGTTAATTCACCTATCTCTCATAAACAATCAACATTAAGAATGAAAAAGGTGGCATTGCGAGATGTGCAGAATGATAATAGGATCTATATGCCTAATCATCCTGAAAATTCTTGTAATCTAGGACGGCAAGTTGGGGATCTTATTAAGGTTTCTGGAACTAAGATAGTCACCCCTGAGCGTCCTCGGAGCTCCCCTTGCCACCAGTTCTCGAACATCAGTGGTTCATGTGAGCAAGCACTAGGCAAGAGAAGAATTCAAGACGTGACAGAACAAAGTGCTGATTGTCTCAATTCCAAACGACATTTACAGAAGCAGGCAGGTGTAACTGATGAAAGAACCAAGAAGCAGGAGAATGAGAGTCCTTGTTCACCTTCATTTGCACCAAACTGTTTGACCTCTCCCATTACCTTTTCACCTGGTAAACCACCAGTTCCACTTTTTCTTGGAAAGTCTAGTAATGCGTCGCCAGGTGCTCGTTCCAGGCACCTTAAATTTACTCCTGATCGTATGGTTTCTAACTTGGTTGATCCTAAGAGGAACAATGATGAGAACAGGACAGAGCGGTTTCTATGTCTGCAGAATCTCTTGAAGCTCATCGATGAGTCTAATCAGGGTGAATATATCCAGATGCTTCGTTGTTTATCATCATCTGAGCTTAACAGACATGCTGTTGAGCTAGAGAAACGATCAATGCTGCTATCAGTCGAGGAAGCAAAAGAGATCCAAAGGATGAAGGCTTTAAATATTTTGGTCAAGTCCCCAATGACAAGCAATTCCCCATTGTCATCTGAGCATGTTCAATCCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

285

Amino Acids

31.82

Weight (kDa)

9.37

Isoelectric Point (pI)

73.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	607
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	4 cut(s)	134, 189, 566, 760
AcsI	RAATTY	3 cut(s)	151, 297, 536
AdeI	CACNNNGTG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	302, 634, 845
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	3 cut(s)	460, 511, 524
AluBI	AGCT	4 cut(s)	234, 637, 700, 721
AluI	AGCT	4 cut(s)	234, 637, 700, 721
Alw21I	GWGCWC	2 cut(s)	236, 520
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	4 cut(s)	134, 189, 566, 760
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	3 cut(s)	151, 297, 536
AsuHPI	GGTGA	7 cut(s)	16, 45, 47, 205, 405, 450, 671
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	236, 520
BbvI	GCAGC	1 cut(s)	726
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	3 cut(s)	462, 513, 526
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	5 cut(s)	12, 164, 284, 498, 722
BfmI	CTRYAG	1 cut(s)	620
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	3 cut(s)	462, 513, 526
BmgBI	CACGTC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	3 cut(s)	462, 513, 526
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	3 cut(s)	36, 247, 473
Bse3DI	GCAATG	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	462, 513, 526
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	2 cut(s)	142, 780
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	3 cut(s)	210, 687, 825
BseNI	ACTGG	3 cut(s)	36, 247, 473
BseXI	GCAGC	1 cut(s)	726
BsgI	GTGCAG	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	642
BsiHKAI	GWGCWC	2 cut(s)	236, 520
BslFI	GGGAC	1 cut(s)	787
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	787
Bsp1286I	GDGCHC	2 cut(s)	236, 520
Bsp143I	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
BspACI	CCGC	1 cut(s)	607
BspCNI	CTCAG	3 cut(s)	211, 688, 826
BspDI	ATCGAT	1 cut(s)	642
BspLI	GGNNCC	1 cut(s)	530
BspMAI	CTGCAG	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	4 cut(s)	134, 189, 566, 760
BspT107I	GGYRCC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	36, 247, 473
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
Bst2UI	CCWGG	3 cut(s)	462, 513, 526
Bst4CI	ACNGT	2 cut(s)	41, 434
BstC8I	GCNNGC	2 cut(s)	279, 360
BstDEI	CTNAG	5 cut(s)	204, 219, 576, 696, 834
BstF5I	GGATG	2 cut(s)	142, 780
BstKTI	GATC	6 cut(s)	129, 184, 550, 574, 734, 768
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 240
BstNI	CCWGG	3 cut(s)	462, 513, 526
BstNSI	RCATGY	2 cut(s)	713, 842
BstSCI	CCNGG	3 cut(s)	460, 511, 524
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	1 cut(s)	726
BstX2I	RGATCY	3 cut(s)	126, 181, 765
BstYI	RGATCY	3 cut(s)	126, 181, 765
Bsu15I	ATCGAT	1 cut(s)	642
BsuTUI	ATCGAT	1 cut(s)	642
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	142, 780
BtsIMutI	CAGTG	3 cut(s)	29, 46, 268
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	279, 360
ClaI	ATCGAT	1 cut(s)	642
CseI	GACGC	2 cut(s)	212, 495
CsiI	ACCWGGT	1 cut(s)	460
CviAII	CATG	3 cut(s)	270, 710, 839
CviJI	RGCY	6 cut(s)	15, 234, 637, 700, 721, 782
CviKI_1	RGCY	6 cut(s)	15, 234, 637, 700, 721, 782
DdeI	CTNAG	5 cut(s)	204, 219, 576, 696, 834
DpnI	GATC	6 cut(s)	128, 183, 549, 573, 733, 767
DpnII	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
DraI	TTTAAA	1 cut(s)	786
DraIII	CACNNNGTG	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	460, 511, 524
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	3 cut(s)	273, 713, 842
FaiI	YATR	9 cut(s)	66, 132, 134, 271, 554, 616, 666, 711, 840
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	3 cut(s)	269, 709, 838
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	2 cut(s)	129, 787
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	5 cut(s)	12, 164, 284, 498, 722
GluI	GCNGC	1 cut(s)	740
HgaI	GACGC	2 cut(s)	212, 495
Hin1II	CATG	3 cut(s)	273, 713, 842
HinfI	GANTC	3 cut(s)	403, 625, 647
HphI	GGTGA	7 cut(s)	16, 45, 47, 205, 405, 450, 671
Hpy166II	GTNNAC	3 cut(s)	7, 413, 467
Hpy188I	TCNGA	3 cut(s)	231, 697, 835
Hpy188III	TCNNGA	7 cut(s)	146, 198, 253, 302, 545, 631, 670
Hpy8I	GTNNAC	3 cut(s)	7, 413, 467
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	426, 772
HpyCH4III	ACNGT	2 cut(s)	41, 434
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	29, 112, 425, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 240
HpyF3I	CTNAG	5 cut(s)	204, 219, 576, 696, 834
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	273, 713, 842
Kzo9I	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
LmnI	GCTCC	2 cut(s)	231, 239
Lsp1109I	GCAGC	1 cut(s)	726
LweI	GCATC	1 cut(s)	663
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	5 cut(s)	12, 164, 284, 498, 722
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	4 cut(s)	35, 211, 307, 367
MalI	GATC	6 cut(s)	128, 183, 549, 573, 733, 767
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
MboII	GAAGA	1 cut(s)	306
MflI	RGATCY	3 cut(s)	126, 181, 765
MhlI	GDGCHC	2 cut(s)	236, 520
MluCI	AATT	6 cut(s)	49, 151, 297, 334, 536, 817
MlyI	GAGTC	2 cut(s)	412, 656
MnlI	CCTC	5 cut(s)	26, 237, 451, 573, 745
MseI	TTAA	6 cut(s)	48, 80, 189, 534, 702, 785
MspR9I	CCNGG	3 cut(s)	462, 513, 526
MvaI	CCWGG	3 cut(s)	462, 513, 526
MwoI	GCNNNNNNNGC	2 cut(s)	109, 240
NdeII	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
NlaIII	CATG	3 cut(s)	273, 713, 842
NlaIV	GGNNCC	1 cut(s)	530
NmuCI	GTSAC	3 cut(s)	35, 211, 307
NspI	RCATGY	2 cut(s)	713, 842
PaqCI	CACCTGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	741
PleI	GAGTC	2 cut(s)	411, 655
PpsI	GAGTC	2 cut(s)	411, 655
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	460, 511, 524
PspGI	CCWGG	3 cut(s)	460, 511, 524
PspN4I	GGNNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	624
PsuI	RGATCY	3 cut(s)	126, 181, 765
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	6 cut(s)	48, 80, 189, 534, 702, 785
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	6 cut(s)	126, 181, 547, 571, 731, 765
SchI	GAGTC	2 cut(s)	412, 656
ScrFI	CCNGG	3 cut(s)	462, 513, 526
SduI	GDGCHC	2 cut(s)	236, 520
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	1 cut(s)	620
Sse9I	AATT	6 cut(s)	49, 151, 297, 334, 536, 817
SsiI	CCGC	1 cut(s)	607
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	5 cut(s)	12, 164, 284, 498, 722
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	460, 511, 524
TaaI	ACNGT	2 cut(s)	41, 434
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	18, 254, 642, 750
TasI	AATT	6 cut(s)	49, 151, 297, 334, 536, 817
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	6 cut(s)	48, 80, 189, 534, 702, 785
Tru9I	TTAA	6 cut(s)	48, 80, 189, 534, 702, 785
TscAI	CASTG	3 cut(s)	36, 46, 268
TseFI	GTSAC	3 cut(s)	35, 211, 307
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	3 cut(s)	35, 211, 307
TspDTI	ATGAA	5 cut(s)	101, 258, 390, 408, 791
TspRI	CASTG	3 cut(s)	36, 46, 268
XapI	RAATTY	3 cut(s)	151, 297, 536
XceI	RCATGY	2 cut(s)	713, 842
XspI	CTAG	5 cut(s)	12, 164, 284, 498, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.