Rw2G026650

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006179
Physical Location & Seq
Forward (+)
41367063 .. 41373199
6137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026650.1

Sequence Viewer

Length: 834 bp
ATGGAAGATGACCATGGAATGCACATGACAATCAATGACAGACGTGAAGAACGCTTCACTTTGCACATAGATGATGAATTCTTTCCCCACAATCCCTACTTGAAACTTGATTTCCCATATAGATTGGCCTCAGTGAATGGGATAGGCTGCCTGACCGACCCAAATCGCTGTAATCTGTGGAACCCTTCGGTGAACAGTGTCATGGAGCTCCCGTTTGCATTTCAATATCCAGATCGTTCTGTCATGCATCATCTTGGATTTGGCTGTGTCCGAATCACGAATGACTACAAGCTGGTAAGACTAGTCTATTTATTAAAAGACCATTATGTGGTTCCACCTGTGGTTGAGATTTTCACTCTTAGCACAAATTCATGGCGACAACTTGCAGCTCCTGGTCCTATGTATGTCACTGTACAACATTCATCATCATCACAGTCCTTTGCATCTGGTGCATTCCACTGGGTTGCGAATGCTCCACCAGAAGAGGGCGCTTTCTGCAATCTGATTCTAGCATTTGATATGGCTAATGAGGTTTTCCATGAACTTCCTCTGCCCAGCTGTTTAGCAGGAAAATCAAACTTGAATATGACTCTTGCGGTGTTGAACGGTTTACTTTCTCTGGTCCCTCGGAATAATGGTCCAGTCGATGACGAGTCTTACTCAGACTCAGTGTGGATCATGAAAGAATACAGCATGGCAGAATCTTGGACTAAGCTATTCAGTATTGATATTCAGGGAGGAGCAATAAGGAGGGTGCTATCGTTCACAAAGAATGGTGAAGTTATATTACTTAACAATTCAGATGAACTGGTCTCATATGAATCCAATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

277

Amino Acids

31.33

Weight (kDa)

5.11

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 40 - 266 6.3e-15 F-box associated beta propeller domain
FBA_1 PF07734 50 - 246 4.9e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 328
AciI CCGC 1 cut(s) 596
AclWI GGATC 1 cut(s) 683
AcsI RAATTY 2 cut(s) 77, 367
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 2 cut(s) 328, 485
AgsI TTSAA 4 cut(s) 103, 224, 583, 604
AhlI ACTAGT 1 cut(s) 301
AjiI CACGTC 1 cut(s) 44
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 5 cut(s) 208, 292, 389, 558, 715
AluI AGCT 5 cut(s) 208, 292, 389, 558, 715
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 817
AlwI GGATC 1 cut(s) 683
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 147, 386
ApoI RAATTY 2 cut(s) 77, 367
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 3 cut(s) 395, 622, 638
AsuHPI GGTGA 2 cut(s) 202, 788
AvaII GGWCC 3 cut(s) 395, 622, 638
BanII GRGCYC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 771, 803
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 134, 398
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 817
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 2 cut(s) 302, 509
BfoI RGCGCY 1 cut(s) 492
BisI GCNGC 2 cut(s) 148, 387
BlsI GCNGC 2 cut(s) 149, 388
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 3 cut(s) 395, 622, 638
BmgBI CACGTC 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 395, 622, 638
BmiI GGNNCC 3 cut(s) 182, 333, 624
BmrFI CCNGG 1 cut(s) 393
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 2 cut(s) 256, 452
BmuI ACTGGG 1 cut(s) 469
BplI GAGNNNNNCTC 2 cut(s) 644, 676
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 2 cut(s) 13, 626
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 485
Bse1I ACTGG 3 cut(s) 464, 641, 813
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 2 cut(s) 13, 626
BseLI CCNNNNNNNGG 2 cut(s) 328, 485
BseMII CTCAG 3 cut(s) 144, 675, 681
BseNI ACTGG 3 cut(s) 464, 641, 813
BseRI GAGGAG 1 cut(s) 753
BseXI GCAGC 2 cut(s) 134, 398
BseYI CCCAGC 1 cut(s) 554
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 210
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 2 cut(s) 328, 485
BsmAI GTCTC 1 cut(s) 817
BsmFI GGGAC 1 cut(s) 608
BsmI GAATGC 3 cut(s) 24, 452, 475
BsnI GGCC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 817
Bsp1286I GDGCHC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 2 cut(s) 232, 675
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 1 cut(s) 596
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 3 cut(s) 143, 674, 680
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 3 cut(s) 182, 333, 624
BspPI GGATC 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 817
BsrGI TGTACA 1 cut(s) 412
BsrI ACTGG 3 cut(s) 464, 641, 813
BssECI CCNNGG 2 cut(s) 13, 626
BssMI GATC 2 cut(s) 232, 675
BssT1I CCWWGG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 4 cut(s) 197, 412, 435, 608
Bst6I CTCTTC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 449
BstAUI TGTACA 1 cut(s) 412
BstDEI CTNAG 5 cut(s) 130, 359, 661, 667, 711
BstDSI CCRYGG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 2 cut(s) 235, 678
BstMAI GTCTC 1 cut(s) 817
BstMBI GATC 2 cut(s) 232, 675
BstMWI GCNNNNNNNGC 2 cut(s) 449, 495
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstV1I GCAGC 2 cut(s) 134, 398
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 13
BtrI CACGTC 1 cut(s) 44
BtsIMutI CAGTG 5 cut(s) 138, 202, 408, 457, 675
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 678
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 3 cut(s) 395, 622, 638
Csp6I GTAC 1 cut(s) 413
CviAII CATG 8 cut(s) 14, 25, 202, 244, 372, 539, 679, 694
CviJI RGCY 9 cut(s) 128, 147, 208, 264, 292, 389, 524, 558, 715
CviKI_1 RGCY 9 cut(s) 128, 147, 208, 264, 292, 389, 524, 558, 715
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 5 cut(s) 130, 359, 661, 667, 711
DpnI GATC 2 cut(s) 234, 677
DpnII GATC 2 cut(s) 232, 675
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 817
Eco47I GGWCC 3 cut(s) 395, 622, 638
Eco53kI GAGCTC 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 8 cut(s) 17, 28, 205, 247, 375, 542, 682, 697
FaqI GGGAC 1 cut(s) 608
FatI CATG 8 cut(s) 13, 24, 201, 243, 371, 538, 678, 693
FauNDI CATATG 1 cut(s) 817
Fnu4HI GCNGC 2 cut(s) 148, 387
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 148, 387
FspBI CTAG 2 cut(s) 302, 509
GlaI GCGC 1 cut(s) 490
GluI GCNGC 2 cut(s) 148, 387
GsaI CCCAGC 1 cut(s) 558
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 1 cut(s) 128
HhaI GCGC 1 cut(s) 491
Hin1II CATG 8 cut(s) 17, 28, 205, 247, 375, 542, 682, 697
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 7 cut(s) 273, 505, 589, 653, 665, 701, 821
HphI GGTGA 2 cut(s) 202, 788
Hpy166II GTNNAC 3 cut(s) 193, 611, 765
Hpy188I TCNGA 5 cut(s) 272, 504, 630, 664, 802
Hpy188III TCNNGA 3 cut(s) 230, 277, 679
Hpy8I GTNNAC 3 cut(s) 193, 611, 765
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 4 cut(s) 197, 412, 435, 608
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 8 cut(s) 22, 64, 218, 247, 386, 443, 452, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 495
HpyF3I CTNAG 5 cut(s) 130, 359, 661, 667, 711
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 8 cut(s) 17, 28, 205, 247, 375, 542, 682, 697
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 2 cut(s) 232, 675
LmnI GCTCC 5 cut(s) 205, 213, 394, 478, 740
Lsp1109I GCAGC 2 cut(s) 134, 398
LweI GCATC 2 cut(s) 256, 452
MaeI CTAG 2 cut(s) 302, 509
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 406
MalI GATC 2 cut(s) 234, 677
MboI GATC 2 cut(s) 232, 675
MboII GAAGA 3 cut(s) 17, 59, 494
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 3 cut(s) 77, 367, 796
MlyI GAGTC 3 cut(s) 583, 659, 662
MnlI CCTC 7 cut(s) 139, 478, 523, 558, 636, 731, 744
Mph1103I ATGCAT 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 2 cut(s) 314, 792
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 558
MspR9I CCNGG 1 cut(s) 393
Mva1269I GAATGC 3 cut(s) 24, 452, 475
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 449, 495
NcoI CCATGG 1 cut(s) 13
NdeI CATATG 1 cut(s) 817
NdeII GATC 2 cut(s) 232, 675
NlaIII CATG 8 cut(s) 17, 28, 205, 247, 375, 542, 682, 697
NlaIV GGNNCC 3 cut(s) 182, 333, 624
NmuCI GTSAC 1 cut(s) 406
NsiI ATGCAT 1 cut(s) 249
PagI TCATGA 1 cut(s) 678
PctI GAATGC 3 cut(s) 24, 452, 475
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 4 cut(s) 273, 505, 701, 821
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 2 cut(s) 149, 388
PleI GAGTC 3 cut(s) 583, 659, 661
PpsI GAGTC 3 cut(s) 583, 659, 661
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 3 cut(s) 182, 333, 624
PspPI GGNCC 3 cut(s) 395, 622, 638
PstNI CAGNNNCTG 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 558
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 69
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 314, 792
SatI GCNGC 2 cut(s) 148, 387
Sau3AI GATC 2 cut(s) 232, 675
Sau96I GGNCC 3 cut(s) 395, 622, 638
SchI GAGTC 3 cut(s) 583, 659, 662
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 46, 210, 294, 340, 391, 534, 560, 717, 833
SfaNI GCATC 2 cut(s) 256, 452
SinI GGWCC 3 cut(s) 395, 622, 638
SmiMI CAYNNNNRTG 1 cut(s) 69
SpeI ACTAGT 1 cut(s) 301
Sse9I AATT 3 cut(s) 77, 367, 796
SsiI CCGC 1 cut(s) 596
SspMI CTAG 2 cut(s) 302, 509
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 4 cut(s) 197, 412, 435, 608
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 645
TaqII GACCGA 1 cut(s) 170
TasI AATT 3 cut(s) 77, 367, 796
TatI WGTACW 1 cut(s) 412
TfiI GAWTC 4 cut(s) 273, 505, 701, 821
Tru1I TTAA 2 cut(s) 314, 792
Tru9I TTAA 2 cut(s) 314, 792
TscAI CASTG 5 cut(s) 138, 202, 415, 464, 675
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 2 cut(s) 147, 386
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 7 cut(s) 90, 360, 411, 555, 695, 819, 834
TspRI CASTG 5 cut(s) 138, 202, 415, 464, 675
Van91I CCANNNNNTGG 1 cut(s) 328
VpaK11BI GGWCC 3 cut(s) 395, 622, 638
XapI RAATTY 2 cut(s) 77, 367
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 2 cut(s) 302, 509
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.