Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003865.1

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Reverse (-)

15304 .. 16497

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003865.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgtctgattatctcccaaaggaatgtctgacggagatactggttagagtaccagtgaagtcactgttgagatttaggtgcgtttcgaaaacatgggattctctcatttctagccctgcatttatcaccacccaactcaatcatgctcatcataaagctagccatggtgaaagaagcaaccaccagtttattctgtttcgacactactcttcctgtgattctattagtgaagacgaccatggttatcgaacttatatcactagcaaagaggaagagtgctttgctttgcacaaggatgatgaatccttcccccacaatcccaccttgaaactcaaacacccacataacagctctgggaagtacttcccgattgtgggctcgatgaatgggatagtctgcatgatcgactggaatgagtgtgttttttggaacccttctttgaacaaaacaatgaagacctcctttgaaacaggatttccatcattctttcctgttacccatcttcttggtctcggctgtgaccccattaccaatgacctcaagctggtaagacttttctattataagcaacatgtcgttccacctcttgttgagattttcaccctcagtactaactcatggcgagaagtttccgtccccggtcctatgtatattgtggtgcaaagtaaatcttcaccacaggcctttgtgtcaggtgcattccactgggttgcttatactccaccacaacagggttctatatgcaatttgatcgtggcattcaatatggctaatgaggttttttatgaaattgcacttcccagctgtttagcttcaaagcgtcacttgaatatgacagtggttttgttgaacggttcactttctctggtcccagataatgaggtctatggagattcatattactcgagctctgtgtggatcatgaaagagtatggcgtggcagaatcttggactaagcaattcaatatcgatattggtgaacaagaagtgagaagggtgatcactttcagaaacaatggggaacttctattgattagcaatcggggtgaactgttatcatatgaaccctatactcaagagactacagatcttcacttcggcaggtatataagctattctgatgcaccaacttataagaccggctcatattttgtagatactcacatggagagccttgttttgttgaatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

397

Amino Acids

45.36

Weight (kDa)

6.01

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	564, 1134
Acc36I	ACCTGC	1 cut(s)	1092
AclWI	GGATC	1 cut(s)	926
AfaI	GTAC	3 cut(s)	51, 362, 610
AfiI	CCNNNNNNNGG	4 cut(s)	373, 374, 544, 731
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	9 cut(s)	328, 442, 467, 763, 816, 829, 850, 964, 1186
AluBI	AGCT	7 cut(s)	158, 351, 544, 804, 812, 909, 1113
AluI	AGCT	7 cut(s)	158, 351, 544, 804, 812, 909, 1113
Alw21I	GWGCWC	1 cut(s)	911
Alw26I	GTCTC	2 cut(s)	515, 1073
AlwI	GGATC	1 cut(s)	926
Ama87I	CYCGRG	1 cut(s)	904
AoxI	GGCC	1 cut(s)	681
ArsI	GACNNNNNNTTYG	2 cut(s)	826, 858
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	641, 868
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	7 cut(s)	118, 179, 592, 666, 989, 1009, 1058
AsuII	TTCGAA	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	904
AvaII	GGWCC	2 cut(s)	641, 868
BanII	GRGCYC	2 cut(s)	380, 911
BbsI	GAAGAC	2 cut(s)	237, 461
Bbv12I	GWGCWC	1 cut(s)	911
BccI	CCATC	2 cut(s)	487, 507
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BclI	TGATCA	1 cut(s)	999
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	515, 1073
BfaI	CTAG	3 cut(s)	111, 159, 261
BfmI	CTRYAG	1 cut(s)	1083
BfuAI	ACCTGC	1 cut(s)	1092
BglII	AGATCT	1 cut(s)	1087
BmcAI	AGTACT	2 cut(s)	362, 610
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	2 cut(s)	641, 868
BmeT110I	CYCGRG	1 cut(s)	904
BmgT120I	GGNCC	2 cut(s)	641, 868
BmiI	GGNNCC	2 cut(s)	431, 870
BmrFI	CCNGG	1 cut(s)	639
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	1 cut(s)	1111
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	715
BpiI	GAAGAC	2 cut(s)	237, 461
Bpu14I	TTCGAA	1 cut(s)	86
BpuEI	CTTGAG	2 cut(s)	524, 1059
BpuMI	CCSGG	1 cut(s)	639
Bsa29I	ATCGAT	1 cut(s)	969
BsaBI	GATNNNNATC	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	3 cut(s)	163, 238, 637
Bsc4I	CCNNNNNNNGG	4 cut(s)	373, 374, 544, 731
Bse118I	RCCGGY	1 cut(s)	1139
Bse1I	ACTGG	5 cut(s)	45, 53, 184, 413, 710
Bse8I	GATNNNNATC	1 cut(s)	478
BseCI	ATCGAT	1 cut(s)	969
BseDI	CCNNGG	3 cut(s)	163, 238, 637
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	4 cut(s)	373, 374, 544, 731
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	5 cut(s)	45, 53, 184, 413, 710
BseYI	CCCAGC	1 cut(s)	800
BshFI	GGCC	1 cut(s)	683
BshVI	ATCGAT	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	911
BsiHKCI	CYCGRG	1 cut(s)	904
BsiSI	CCGG	2 cut(s)	639, 1140
BslFI	GGGAC	2 cut(s)	620, 854
BslI	CCNNNNNNNGG	4 cut(s)	373, 374, 544, 731
BsmAI	GTCTC	2 cut(s)	515, 1073
BsmFI	GGGAC	2 cut(s)	620, 854
BsmI	GAATGC	2 cut(s)	698, 758
BsnI	GGCC	1 cut(s)	683
Bso31I	GGTCTC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	904
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	380, 911
Bsp143I	GATC	5 cut(s)	402, 750, 918, 999, 1087
Bsp19I	CCATGG	2 cut(s)	163, 238
BspANI	GGCC	1 cut(s)	683
BspCNI	CTCAG	1 cut(s)	618
BspDI	ATCGAT	1 cut(s)	969
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	2 cut(s)	431, 870
BspMI	ACCTGC	1 cut(s)	1092
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	926
BspT104I	TTCGAA	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	1139
BsrI	ACTGG	5 cut(s)	45, 53, 184, 413, 710
BssAI	RCCGGY	1 cut(s)	1139
BssECI	CCNNGG	3 cut(s)	163, 238, 637
BssMI	GATC	5 cut(s)	402, 750, 918, 999, 1087
BssT1I	CCWWGG	2 cut(s)	163, 238
Bst4CI	ACNGT	4 cut(s)	66, 838, 854, 1053
Bst6I	CTCTTC	2 cut(s)	214, 267
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	605, 954
BstDSI	CCRYGG	2 cut(s)	163, 238
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	5 cut(s)	405, 753, 921, 1002, 1090
BstMAI	GTCTC	2 cut(s)	515, 1073
BstMBI	GATC	5 cut(s)	402, 750, 918, 999, 1087
BstNSI	RCATGY	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	1 cut(s)	1083
BstV2I	GAAGAC	2 cut(s)	237, 461
BstX2I	RGATCY	1 cut(s)	1087
BstXI	CCANNNNNNTGG	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	1087
Bsu15I	ATCGAT	1 cut(s)	969
BsuRI	GGCC	1 cut(s)	683
BsuTUI	ATCGAT	1 cut(s)	969
BtgI	CCRYGG	2 cut(s)	163, 238
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	4 cut(s)	60, 62, 703, 843
BveI	ACCTGC	1 cut(s)	1092
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	921
Cfr10I	RCCGGY	1 cut(s)	1139
Cfr13I	GGNCC	2 cut(s)	641, 868
ClaI	ATCGAT	1 cut(s)	969
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	3 cut(s)	50, 361, 609
CviAII	CATG	9 cut(s)	93, 143, 164, 239, 400, 572, 618, 922, 1165
CviQI	GTAC	3 cut(s)	50, 361, 609
DdeI	CTNAG	2 cut(s)	605, 954
DpnI	GATC	5 cut(s)	404, 752, 920, 1001, 1089
DpnII	GATC	5 cut(s)	402, 750, 918, 999, 1087
Eam1104I	CTCTTC	2 cut(s)	214, 267
EarI	CTCTTC	2 cut(s)	214, 267
Ecl136II	GAGCTC	1 cut(s)	909
Eco130I	CCWWGG	2 cut(s)	163, 238
Eco147I	AGGCCT	1 cut(s)	683
Eco24I	GRGCYC	2 cut(s)	380, 911
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	2 cut(s)	641, 868
Eco53kI	GAGCTC	1 cut(s)	909
Eco88I	CYCGRG	1 cut(s)	904
EcoICRI	GAGCTC	1 cut(s)	909
EcoT14I	CCWWGG	2 cut(s)	163, 238
EcoT38I	GRGCYC	2 cut(s)	380, 911
ErhI	CCWWGG	2 cut(s)	163, 238
FaeI	CATG	9 cut(s)	96, 146, 167, 242, 403, 575, 621, 925, 1168
FalI	AAGNNNNNCTT	6 cut(s)	446, 478, 655, 687, 809, 841
FaqI	GGGAC	2 cut(s)	620, 854
FatI	CATG	9 cut(s)	92, 142, 163, 238, 399, 571, 617, 921, 1164
FauNDI	CATATG	1 cut(s)	1060
FbaI	TGATCA	1 cut(s)	999
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	2 cut(s)	380, 911
FspBI	CTAG	3 cut(s)	111, 159, 261
GsaI	CCCAGC	1 cut(s)	804
HaeIII	GGCC	1 cut(s)	683
HapII	CCGG	2 cut(s)	639, 1140
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	9 cut(s)	96, 146, 167, 242, 403, 575, 621, 925, 1168
HinfI	GANTC	5 cut(s)	98, 218, 302, 893, 944
HpaII	CCGG	2 cut(s)	639, 1140
HphI	GGTGA	7 cut(s)	118, 179, 592, 666, 989, 1009, 1058
Hpy166II	GTNNAC	3 cut(s)	857, 980, 1049
Hpy188I	TCNGA	4 cut(s)	7, 30, 1010, 1120
Hpy188III	TCNNGA	3 cut(s)	367, 922, 1076
Hpy8I	GTNNAC	3 cut(s)	857, 980, 1049
HpyAV	CCTTC	3 cut(s)	316, 444, 987
HpyCH4III	ACNGT	4 cut(s)	66, 838, 854, 1053
HpyCH4V	TGCA	8 cut(s)	119, 289, 399, 661, 698, 744, 794, 1124
HpyF3I	CTNAG	2 cut(s)	605, 954
Hsp92II	CATG	9 cut(s)	96, 146, 167, 242, 403, 575, 621, 925, 1168
Ksp22I	TGATCA	1 cut(s)	999
Kzo9I	GATC	5 cut(s)	402, 750, 918, 999, 1087
LweI	GCATC	1 cut(s)	1111
MaeI	CTAG	3 cut(s)	111, 159, 261
MaeIII	GTNAC	4 cut(s)	60, 493, 518, 821
MalI	GATC	5 cut(s)	404, 752, 920, 1001, 1089
MboI	GATC	5 cut(s)	402, 750, 918, 999, 1087
MboII	GAAGA	7 cut(s)	201, 242, 284, 466, 494, 663, 1082
MflI	RGATCY	1 cut(s)	1087
MhlI	GDGCHC	2 cut(s)	380, 911
MluCI	AATT	3 cut(s)	745, 789, 959
MnlI	CCTC	7 cut(s)	262, 469, 548, 594, 614, 769, 874
MroXI	GAANNNNTTC	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	804
MspI	CCGG	2 cut(s)	639, 1140
MspR9I	CCNGG	1 cut(s)	639
Mva1269I	GAATGC	2 cut(s)	698, 758
NciI	CCSGG	1 cut(s)	639
NcoI	CCATGG	2 cut(s)	163, 238
NdeI	CATATG	1 cut(s)	1060
NdeII	GATC	5 cut(s)	402, 750, 918, 999, 1087
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	9 cut(s)	96, 146, 167, 242, 403, 575, 621, 925, 1168
NlaIV	GGNNCC	2 cut(s)	431, 870
NmeAIII	GCCGAG	1 cut(s)	492
NmuCI	GTSAC	3 cut(s)	60, 518, 821
NspI	RCATGY	1 cut(s)	575
NspV	TTCGAA	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	904
PagI	TCATGA	1 cut(s)	921
PceI	AGGCCT	1 cut(s)	683
PciI	ACATGT	1 cut(s)	571
PctI	GAATGC	2 cut(s)	698, 758
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	5 cut(s)	98, 218, 302, 893, 944
PscI	ACATGT	1 cut(s)	571
PsiI	TTATAA	2 cut(s)	564, 1134
Psp124BI	GAGCTC	1 cut(s)	911
PspFI	CCCAGC	1 cut(s)	800
PspN4I	GGNNCC	2 cut(s)	431, 870
PspPI	GGNCC	2 cut(s)	641, 868
PspXI	VCTCGAGB	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	1087
PvuII	CAGCTG	1 cut(s)	804
RsaI	GTAC	3 cut(s)	51, 362, 610
RsaNI	GTAC	3 cut(s)	50, 361, 609
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	911
Sau3AI	GATC	5 cut(s)	402, 750, 918, 999, 1087
Sau96I	GGNCC	2 cut(s)	641, 868
ScaI	AGTACT	2 cut(s)	362, 610
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	2 cut(s)	380, 911
SfaNI	GCATC	1 cut(s)	1111
SfcI	CTRYAG	1 cut(s)	1083
Sfr274I	CTCGAG	1 cut(s)	904
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	2 cut(s)	641, 868
SlaI	CTCGAG	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	3 cut(s)	539, 904, 1074
SmoI	CTYRAG	3 cut(s)	539, 904, 1074
Sse9I	AATT	3 cut(s)	745, 789, 959
SseBI	AGGCCT	1 cut(s)	683
SspMI	CTAG	3 cut(s)	111, 159, 261
SstI	GAGCTC	1 cut(s)	911
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	2 cut(s)	163, 238
TaaI	ACNGT	4 cut(s)	66, 838, 854, 1053
TaqI	TCGA	7 cut(s)	86, 199, 247, 380, 405, 905, 969
TasI	AATT	3 cut(s)	745, 789, 959
TatI	WGTACW	2 cut(s)	360, 608
TfiI	GAWTC	5 cut(s)	98, 218, 302, 893, 944
TscAI	CASTG	4 cut(s)	60, 69, 710, 843
TseFI	GTSAC	3 cut(s)	60, 518, 821
Tsp45I	GTSAC	3 cut(s)	60, 518, 821
TspDTI	ATGAA	7 cut(s)	315, 398, 467, 801, 885, 938, 1077
TspGWI	ACGGA	2 cut(s)	47, 622
TspRI	CASTG	4 cut(s)	60, 69, 710, 843
VpaK11BI	GGWCC	2 cut(s)	641, 868
XceI	RCATGY	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	3 cut(s)	111, 159, 261
ZrmI	AGTACT	2 cut(s)	362, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.