FvH4_6g26740

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006179
Physical Location & Seq
Forward (+)
20439161 .. 20440042
882 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26740.t1

Sequence Viewer

Length: 723 bp
ATGGAAGATGGCCATGGGATGCATATGACAGTCAATGACAAGCGTGAAGAGCGCTTCTCTTTGCACATTGACGATGAATCTTTTCCCCACAATCCGTACTTGAAACTTGATTTCCCACATAGATGTGGGGGTTACTATAAGCATTACTTCCAAATAGTGGCCTCACTGAATGGAATAGTCTGCCTGGTCGATCCAAATCGCTGTATACTGTGGAACCCTTCAGTGAACAGAGTCATGGAGCTCCCGTTTCCATTTCATTATCCGGATCGTGCAGTCTTGCAACGTTTTGGGTTCGGCTGTGACCGAATTACGAATGACTACAAGCTGGTAAGACTACTCTACTCTGGAAGAAAAGGCCATTATGTGATTCCACCTGTGGTTGAGACTTTCACTCTTAGCACAAACTCATGGCGACGACCCGCAGCTCCTGGTCCTATGTATATCACTGTTCAACATTCATCATCATCACAGGCCTTTGCATCTGGTGCAGTCCACTGGGTTGCGCATGGTCCACCAGAAGAGGGCACTTTCTGCAATCTGATTCTAGCATTTGATACGGCTAAGGAGGTTTTTCACGAACTTCCTCTGCCCAGCTGTTTAGCAGCAAAATCAAACTTGAATATGACTCTCGCGGTGTTGAACGGGTTACTTTCTCTGGTCCCTCGCAATAATGGTCCGGTCGGCGACGAGTCTTACTCAGACTCCGTGTGGATCATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

241

Amino Acids

27.12

Weight (kDa)

6.62

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 17 - 239 1.1e-13 F-box associated beta propeller domain
FBA_1 PF07734 52 - 215 2.6e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 504
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 205
AccII CGCG 1 cut(s) 632
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 2 cut(s) 420, 632
AclI AACGTT 1 cut(s) 283
AclWI GGATC 3 cut(s) 185, 273, 719
AcoI YGGCCR 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 98
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 157, 521
AgsI TTSAA 4 cut(s) 103, 452, 619, 640
AjnI CCWGG 2 cut(s) 183, 427
AluBI AGCT 4 cut(s) 241, 325, 425, 594
AluI AGCT 4 cut(s) 241, 325, 425, 594
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 3 cut(s) 185, 273, 719
AlwNI CAGNNNCTG 1 cut(s) 428
Aor13HI TCCGGA 1 cut(s) 262
Aor51HI AGCGCT 1 cut(s) 53
AoxI GGCC 4 cut(s) 10, 159, 355, 471
ApeKI GCWGC 2 cut(s) 422, 602
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 54, 505
AspS9I GGNCC 4 cut(s) 431, 509, 658, 674
AvaII GGWCC 4 cut(s) 431, 509, 658, 674
BaeGI GKGCMC 1 cut(s) 527
BalI TGGCCA 1 cut(s) 12
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 434, 614
BccI CCATC 1 cut(s) 2
BceAI ACGGC 1 cut(s) 573
BciT130I CCWGG 2 cut(s) 185, 429
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 55
BisI GCNGC 2 cut(s) 423, 603
BlsI GCNGC 2 cut(s) 424, 604
Bme1390I CCNGG 2 cut(s) 185, 429
Bme18I GGWCC 4 cut(s) 431, 509, 658, 674
BmgT120I GGNCC 4 cut(s) 431, 509, 658, 674
BmiI GGNNCC 2 cut(s) 215, 660
BmrFI CCNGG 2 cut(s) 185, 429
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 9, 488
BmuI ACTGGG 1 cut(s) 505
BplI GAGNNNNNCTC 4 cut(s) 41, 73, 680, 712
Bpu10I CCTNAGC 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 2 cut(s) 262, 676
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 686, 716
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 521
Bse1I ACTGG 1 cut(s) 500
Bse8I GATNNNNATC 1 cut(s) 195
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 2 cut(s) 185, 429
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 157, 521
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 2 cut(s) 434, 614
BseYI CCCAGC 1 cut(s) 590
BsgI GTGCAG 2 cut(s) 291, 507
Bsh1236I CGCG 1 cut(s) 632
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 4 cut(s) 12, 161, 357, 473
BsiEI CGRYCG 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 2 cut(s) 263, 677
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 2 cut(s) 157, 521
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 4 cut(s) 12, 161, 357, 473
Bsp1286I GDGCHC 2 cut(s) 243, 527
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 3 cut(s) 190, 265, 711
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 2 cut(s) 420, 632
BspANI GGCC 4 cut(s) 12, 161, 357, 473
BspCNI CTCAG 1 cut(s) 710
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 1 cut(s) 632
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 2 cut(s) 215, 660
BspPI GGATC 3 cut(s) 185, 273, 719
BspQI GCTCTTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 3 cut(s) 190, 265, 711
BssNAI GTATAC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 13
Bst1107I GTATAC 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 185, 429
Bst4CI ACNGT 3 cut(s) 31, 210, 448
Bst6I CTCTTC 2 cut(s) 42, 513
BstAPI GCANNNNNTGC 2 cut(s) 485, 531
BstDEI CTNAG 3 cut(s) 395, 561, 697
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 632
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 505
BstKTI GATC 3 cut(s) 193, 268, 714
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 3 cut(s) 190, 265, 711
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 3 cut(s) 49, 485, 531
BstNI CCWGG 2 cut(s) 185, 429
BstSCI CCNGG 2 cut(s) 183, 427
BstSLI GKGCMC 1 cut(s) 527
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 2 cut(s) 434, 614
BstZ17I GTATAC 1 cut(s) 206
BsuRI GGCC 4 cut(s) 12, 161, 357, 473
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 4 cut(s) 164, 228, 444, 493
CaiI CAGNNNCTG 1 cut(s) 428
CciI TCATGA 1 cut(s) 714
CfoI GCGC 2 cut(s) 54, 505
Cfr13I GGNCC 4 cut(s) 431, 509, 658, 674
Csp6I GTAC 1 cut(s) 97
CviAII CATG 5 cut(s) 14, 235, 408, 506, 715
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 3 cut(s) 395, 561, 697
DpnI GATC 3 cut(s) 192, 267, 713
DpnII GATC 3 cut(s) 190, 265, 711
EaeI YGGCCR 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 42, 513
EarI CTCTTC 2 cut(s) 42, 513
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 4 cut(s) 431, 509, 658, 674
Eco47III AGCGCT 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 183, 427
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 5 cut(s) 17, 238, 411, 509, 718
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 644
FatI CATG 5 cut(s) 13, 234, 407, 505, 714
FauI CCCGC 1 cut(s) 427
FauNDI CATATG 1 cut(s) 24
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 423, 603
FokI GGATG 1 cut(s) 31
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 423, 603
FspBI CTAG 1 cut(s) 545
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 2 cut(s) 53, 504
GluI GCNGC 2 cut(s) 423, 603
GsaI CCCAGC 1 cut(s) 594
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 4 cut(s) 12, 161, 357, 473
HapII CCGG 2 cut(s) 263, 677
HhaI GCGC 2 cut(s) 54, 505
Hin1II CATG 5 cut(s) 17, 238, 411, 509, 718
Hin6I GCGC 2 cut(s) 52, 503
HinP1I GCGC 2 cut(s) 52, 503
HinfI GANTC 7 cut(s) 77, 231, 367, 541, 625, 689, 701
HpaII CCGG 2 cut(s) 263, 677
Hpy166II GTNNAC 4 cut(s) 206, 226, 493, 512
Hpy188I TCNGA 2 cut(s) 540, 700
Hpy188III TCNNGA 4 cut(s) 263, 345, 575, 715
Hpy8I GTNNAC 4 cut(s) 206, 226, 493, 512
Hpy99I CGWCG 2 cut(s) 417, 689
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 3 cut(s) 31, 210, 448
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 7 cut(s) 22, 64, 272, 280, 479, 488, 534
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 485, 531
HpyF3I CTNAG 3 cut(s) 395, 561, 697
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 5 cut(s) 17, 238, 411, 509, 718
HspAI GCGC 2 cut(s) 52, 503
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 190, 265, 711
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 238, 246, 430
Lsp1109I GCAGC 2 cut(s) 434, 614
LweI GCATC 2 cut(s) 9, 488
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 3 cut(s) 131, 299, 645
MalI GATC 3 cut(s) 192, 267, 713
MboI GATC 3 cut(s) 190, 265, 711
MboII GAAGA 4 cut(s) 17, 59, 360, 530
MhlI GDGCHC 2 cut(s) 243, 527
MlsI TGGCCA 1 cut(s) 12
MluCI AATT 1 cut(s) 306
MluNI TGGCCA 1 cut(s) 12
MlyI GAGTC 4 cut(s) 240, 619, 695, 698
MnlI CCTC 5 cut(s) 172, 514, 559, 594, 672
Mox20I TGGCCA 1 cut(s) 12
Mph1103I ATGCAT 1 cut(s) 24
MroI TCCGGA 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 81
MscI TGGCCA 1 cut(s) 12
MslI CAYNNNNRTG 2 cut(s) 121, 123
Msp20I TGGCCA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 594
MspI CCGG 2 cut(s) 263, 677
MspR9I CCNGG 2 cut(s) 185, 429
MvaI CCWGG 2 cut(s) 185, 429
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 3 cut(s) 49, 485, 531
NcoI CCATGG 1 cut(s) 13
NdeI CATATG 1 cut(s) 24
NdeII GATC 3 cut(s) 190, 265, 711
NlaIII CATG 5 cut(s) 17, 238, 411, 509, 718
NlaIV GGNNCC 2 cut(s) 215, 660
NmuCI GTSAC 1 cut(s) 299
NsbI TGCGCA 1 cut(s) 504
NsiI ATGCAT 1 cut(s) 24
PagI TCATGA 1 cut(s) 714
PceI AGGCCT 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 77, 367, 541
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 2 cut(s) 424, 604
PleI GAGTC 4 cut(s) 239, 619, 695, 697
PpsI GAGTC 4 cut(s) 239, 619, 695, 697
Psp124BI GAGCTC 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 183, 427
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 2 cut(s) 183, 427
PspN4I GGNNCC 2 cut(s) 215, 660
PspPI GGNCC 4 cut(s) 431, 509, 658, 674
PstNI CAGNNNCTG 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 594
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 2 cut(s) 121, 123
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 2 cut(s) 423, 603
Sau3AI GATC 3 cut(s) 190, 265, 711
Sau96I GGNCC 4 cut(s) 431, 509, 658, 674
SchI GAGTC 4 cut(s) 240, 619, 695, 698
ScrFI CCNGG 2 cut(s) 185, 429
SduI GDGCHC 2 cut(s) 243, 527
SetI ASST 7 cut(s) 243, 286, 327, 376, 427, 570, 596
SfaNI GCATC 2 cut(s) 9, 488
SinI GGWCC 4 cut(s) 431, 509, 658, 674
SmiMI CAYNNNNRTG 2 cut(s) 121, 123
Sse9I AATT 1 cut(s) 306
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 2 cut(s) 420, 632
SspMI CTAG 1 cut(s) 545
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 183, 427
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 3 cut(s) 31, 210, 448
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 189
TaqII GACCGA 1 cut(s) 318
TasI AATT 1 cut(s) 306
TfiI GAWTC 3 cut(s) 77, 367, 541
TscAI CASTG 4 cut(s) 171, 228, 451, 500
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 2 cut(s) 422, 602
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 3 cut(s) 90, 245, 447
TspGWI ACGGA 2 cut(s) 84, 694
TspRI CASTG 4 cut(s) 171, 228, 451, 500
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 4 cut(s) 431, 509, 658, 674
XmiI GTMKAC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 545
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.