Rh2CG315700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006179
Physical Location & Seq
Forward (+)
40058594 .. 40059805
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG315700.1

Sequence Viewer

Length: 1212 bp
ATGAGAGCAAACAGACAGACAATGTCAGATTATCTTCCAAATGAAGTTCTAATAGATGTACTTGTGAGACTACCTGTGAAGTCACTGCTGAGATTCAGGTGTGTTTCGAAGATATGGAACTCTCTCATTTCTAGCCCTGCATTCATCAACACCCATCTCAACCAAGCTCTTCTTCAACAAACCAACCAGGAACTGCTTCTCTTTCGATACTACTATTCCATAGATTATGTAATGGAAGATGACCATGGAATGCACATGACAGTCAATGACAGGCGTGAAGAACGCTTCACTTTGCACATAGATGATGAATTCTTTCCCCACAATCCGTACTTGAAACTTGATTTCCCATATAGATGTGGGGGCTACTATAAACATTACTTCCAAATAGTGGCCTCAGTGAATGGGATAGTCTGCCTGGCCGACCCAAATCGCTGTAATCTGTGGAACCCTTCGGTGAACAGAGTCATGGAGCTCCCGTTTGCATTTCAATATCCAGATCGTTCTGTCATGCATCATCTTGGATTTGGCTGTGACCGAATCACGAATGACTACAAGCTGGTAAGACTAGTCTATTTTGGAAGAAAAGACCATTATGTGGTTCCACCTGTGGTTGAGATTTTCACTCTTAGCACAAATTCATGGCGACAACTTGCAGCTCCTGGTCCTATGTATGTCACTGTACAGCATTCATCATCATCACAGTCCTTTGCATCTGGTGCATTCCACTGGGTTGCGAATGCTCCACCAGAAGAGGGCGCTTTCTGCAATCTGATTCTAGCATTTGATATGGCTAATGAGGTTTTCCATGAACTTCCTCTGCCCAGCTGTTTAGCAGCAAAATCAAACTTGAATATGACTCTTGCGGTGTTGAACGGTTTACTTTCTCTGGTCCCTCGGAATAATGGTCCGGTCGATGACGAGTCTTACTCAGACTCAGTGTGGATCATGAAAGAATACAGCATGGCAGAATCTTGGACTAAGCTATTCAGTATTGATATTCAGGGAGGAGCAATAAGGAGGGTGCTATCGTTCACAAAGAATGGTCAAGTTATATTACTTAACAATTCAGATGAACTGGTCTCATATGAATCTAATACCCAACAAACTAGGGATCTTGAATACAGTGTAGGCAAGAGATTCTCAAAAAAAGTGTATTCTCTGGATACTTACATGGAGAGCCTTGTTCTGTTGAATGTAGCTGATGCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

403

Amino Acids

46.29

Weight (kDa)

5.95

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 11 - 47 1.5e-08 F-box-like
F-box PF00646 12 - 48 4.5e-10 F-box domain
FBA_3 PF08268 111 - 369 5.5e-18 F-box associated beta propeller domain
FBA_1 PF07734 129 - 385 6e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1210
AccB7I CCANNNNNTGG 2 cut(s) 388, 595
AciI CCGC 1 cut(s) 863
AclWI GGATC 2 cut(s) 950, 1119
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 2 cut(s) 308, 634
AfaI GTAC 3 cut(s) 60, 329, 681
AfiI CCNNNNNNNGG 3 cut(s) 388, 595, 752
AgsI TTSAA 7 cut(s) 176, 334, 488, 850, 871, 1118, 1192
AhlI ACTAGT 1 cut(s) 565
AjnI CCWGG 3 cut(s) 186, 414, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 7 cut(s) 167, 472, 556, 656, 825, 982, 1199
AluI AGCT 7 cut(s) 167, 472, 556, 656, 825, 982, 1199
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 2 cut(s) 61, 1084
AlwI GGATC 2 cut(s) 950, 1119
AlwNI CAGNNNCTG 2 cut(s) 193, 659
AoxI GGCC 2 cut(s) 390, 417
ApeKI GCWGC 2 cut(s) 653, 833
ApoI RAATTY 2 cut(s) 308, 634
Asp700I GAANNNNTTC 2 cut(s) 195, 312
AspLEI GCGC 1 cut(s) 758
AspS9I GGNCC 3 cut(s) 662, 889, 905
AsuHPI GGTGA 1 cut(s) 466
AsuII TTCGAA 1 cut(s) 107
AvaII GGWCC 3 cut(s) 662, 889, 905
BanII GRGCYC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 665, 845
BccI CCATC 1 cut(s) 162
BciT130I CCWGG 3 cut(s) 188, 416, 660
BciVI GTATCC 1 cut(s) 1156
BcoDI GTCTC 2 cut(s) 61, 1084
BcuI ACTAGT 1 cut(s) 565
BfaI CTAG 4 cut(s) 132, 566, 776, 1107
BfoI RGCGCY 1 cut(s) 759
BfuI GTATCC 1 cut(s) 1156
BisI GCNGC 2 cut(s) 654, 834
BlsI GCNGC 2 cut(s) 655, 835
Bme1390I CCNGG 3 cut(s) 188, 416, 660
Bme18I GGWCC 3 cut(s) 662, 889, 905
BmgT120I GGNCC 3 cut(s) 662, 889, 905
BmiI GGNNCC 3 cut(s) 446, 600, 891
BmrFI CCNGG 3 cut(s) 188, 416, 660
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 3 cut(s) 520, 719, 1192
BmuI ACTGGG 1 cut(s) 736
BplI GAGNNNNNCTC 2 cut(s) 911, 943
Bpu14I TTCGAA 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 1084
BsaJI CCNNGG 2 cut(s) 244, 893
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 595, 752
Bse1I ACTGG 2 cut(s) 731, 1080
BseBI CCWGG 3 cut(s) 188, 416, 660
BseDI CCNNGG 2 cut(s) 244, 893
BseLI CCNNNNNNNGG 3 cut(s) 388, 595, 752
BseMII CTCAG 4 cut(s) 80, 408, 942, 948
BseNI ACTGG 2 cut(s) 731, 1080
BseRI GAGGAG 1 cut(s) 1020
BseXI GCAGC 2 cut(s) 665, 845
BseYI CCCAGC 1 cut(s) 821
Bsh1285I CGRYCG 1 cut(s) 912
BshFI GGCC 2 cut(s) 392, 419
BsiEI CGRYCG 1 cut(s) 912
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 1 cut(s) 908
BslFI GGGAC 1 cut(s) 875
BslI CCNNNNNNNGG 3 cut(s) 388, 595, 752
BsmAI GTCTC 2 cut(s) 61, 1084
BsmFI GGGAC 1 cut(s) 875
BsmI GAATGC 5 cut(s) 140, 255, 685, 719, 742
BsnI GGCC 2 cut(s) 392, 419
Bso31I GGTCTC 1 cut(s) 1084
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 474
Bsp1407I TGTACA 1 cut(s) 679
Bsp143I GATC 3 cut(s) 496, 942, 1111
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 863
BspANI GGCC 2 cut(s) 392, 419
BspCNI CTCAG 4 cut(s) 81, 407, 941, 947
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 3 cut(s) 446, 600, 891
BspPI GGATC 2 cut(s) 950, 1119
BspQI GCTCTTC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 1084
BsrGI TGTACA 1 cut(s) 679
BsrI ACTGG 2 cut(s) 731, 1080
BssECI CCNNGG 2 cut(s) 244, 893
BssMI GATC 3 cut(s) 496, 942, 1111
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 188, 416, 660
Bst4CI ACNGT 5 cut(s) 262, 679, 702, 875, 1124
Bst6I CTCTTC 2 cut(s) 174, 744
BstAPI GCANNNNNTGC 1 cut(s) 716
BstAUI TGTACA 1 cut(s) 679
BstBI TTCGAA 1 cut(s) 107
BstDEI CTNAG 6 cut(s) 89, 394, 626, 928, 934, 978
BstDSI CCRYGG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 759
BstHHI GCGC 1 cut(s) 758
BstKTI GATC 3 cut(s) 499, 945, 1114
BstMAI GTCTC 2 cut(s) 61, 1084
BstMBI GATC 3 cut(s) 496, 942, 1111
BstMCI CGRYCG 1 cut(s) 912
BstMWI GCNNNNNNNGC 2 cut(s) 716, 762
BstNI CCWGG 3 cut(s) 188, 416, 660
BstSCI CCNGG 3 cut(s) 186, 414, 658
BstV1I GCAGC 2 cut(s) 665, 845
BstX2I RGATCY 1 cut(s) 1111
BstYI RGATCY 1 cut(s) 1111
BsuI GTATCC 1 cut(s) 1156
BsuRI GGCC 2 cut(s) 392, 419
BtgI CCRYGG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 6 cut(s) 83, 402, 675, 724, 942, 1129
CaiI CAGNNNCTG 2 cut(s) 193, 659
CciI TCATGA 1 cut(s) 945
CfoI GCGC 1 cut(s) 758
Cfr13I GGNCC 3 cut(s) 662, 889, 905
Csp6I GTAC 3 cut(s) 59, 328, 680
CviAII CATG 9 cut(s) 245, 256, 466, 508, 639, 806, 946, 961, 1171
CviQI GTAC 3 cut(s) 59, 328, 680
DdeI CTNAG 6 cut(s) 89, 394, 626, 928, 934, 978
DpnI GATC 3 cut(s) 498, 944, 1113
DpnII GATC 3 cut(s) 496, 942, 1111
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 174, 744
EarI CTCTTC 2 cut(s) 174, 744
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 1084
Eco47I GGWCC 3 cut(s) 662, 889, 905
Eco53kI GAGCTC 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 3 cut(s) 186, 414, 658
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 9 cut(s) 248, 259, 469, 511, 642, 809, 949, 964, 1174
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 1 cut(s) 875
FatI CATG 9 cut(s) 244, 255, 465, 507, 638, 805, 945, 960, 1170
FauNDI CATATG 1 cut(s) 1084
Fnu4HI GCNGC 2 cut(s) 654, 834
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 2 cut(s) 654, 834
FspBI CTAG 4 cut(s) 132, 566, 776, 1107
GlaI GCGC 1 cut(s) 757
GluI GCNGC 2 cut(s) 654, 834
GsaI CCCAGC 1 cut(s) 825
HaeII RGCGCY 1 cut(s) 759
HaeIII GGCC 2 cut(s) 392, 419
HapII CCGG 1 cut(s) 908
HhaI GCGC 1 cut(s) 758
Hin1II CATG 9 cut(s) 248, 259, 469, 511, 642, 809, 949, 964, 1174
Hin6I GCGC 1 cut(s) 756
HinP1I GCGC 1 cut(s) 756
HpaII CCGG 1 cut(s) 908
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 3 cut(s) 457, 878, 1032
Hpy188I TCNGA 5 cut(s) 28, 771, 897, 931, 1069
Hpy188III TCNNGA 5 cut(s) 494, 541, 946, 1115, 1160
Hpy8I GTNNAC 3 cut(s) 457, 878, 1032
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 5 cut(s) 262, 679, 702, 875, 1124
HpyCH4V TGCA 9 cut(s) 140, 253, 295, 482, 511, 653, 710, 719, 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 716, 762
HpyF3I CTNAG 6 cut(s) 89, 394, 626, 928, 934, 978
Hsp92II CATG 9 cut(s) 248, 259, 469, 511, 642, 809, 949, 964, 1174
HspAI GCGC 1 cut(s) 756
Kzo9I GATC 3 cut(s) 496, 942, 1111
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 5 cut(s) 469, 477, 661, 745, 1007
Lsp1109I GCAGC 2 cut(s) 665, 845
LweI GCATC 3 cut(s) 520, 719, 1192
MaeI CTAG 4 cut(s) 132, 566, 776, 1107
MaeIII GTNAC 3 cut(s) 81, 530, 673
MalI GATC 3 cut(s) 498, 944, 1113
MboI GATC 3 cut(s) 496, 942, 1111
MboII GAAGA 8 cut(s) 26, 121, 161, 164, 248, 290, 591, 761
MflI RGATCY 1 cut(s) 1111
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 3 cut(s) 308, 634, 1063
MlyI GAGTC 4 cut(s) 471, 850, 926, 929
MnlI CCTC 7 cut(s) 403, 745, 790, 825, 903, 998, 1011
Mph1103I ATGCAT 1 cut(s) 513
MroXI GAANNNNTTC 2 cut(s) 195, 312
MseI TTAA 1 cut(s) 1059
MslI CAYNNNNRTG 2 cut(s) 300, 352
MspA1I CMGCKG 1 cut(s) 825
MspI CCGG 1 cut(s) 908
MspR9I CCNGG 3 cut(s) 188, 416, 660
Mva1269I GAATGC 5 cut(s) 140, 255, 685, 719, 742
MvaI CCWGG 3 cut(s) 188, 416, 660
MwoI GCNNNNNNNGC 2 cut(s) 716, 762
NcoI CCATGG 1 cut(s) 244
NdeI CATATG 1 cut(s) 1084
NdeII GATC 3 cut(s) 496, 942, 1111
NlaIII CATG 9 cut(s) 248, 259, 469, 511, 642, 809, 949, 964, 1174
NlaIV GGNNCC 3 cut(s) 446, 600, 891
NmuCI GTSAC 3 cut(s) 81, 530, 673
NsiI ATGCAT 1 cut(s) 513
NspV TTCGAA 1 cut(s) 107
PagI TCATGA 1 cut(s) 945
PciSI GCTCTTC 1 cut(s) 174
PctI GAATGC 5 cut(s) 140, 255, 685, 719, 742
PdmI GAANNNNTTC 2 cut(s) 195, 312
PfeI GAWTC 6 cut(s) 93, 537, 772, 968, 1088, 1137
PflFI GACNNNGTC 1 cut(s) 22
PflMI CCANNNNNTGG 2 cut(s) 388, 595
PkrI GCNGC 2 cut(s) 655, 835
PleI GAGTC 4 cut(s) 470, 850, 926, 928
PpsI GAGTC 4 cut(s) 470, 850, 926, 928
PsiI TTATAA 1 cut(s) 1210
Psp124BI GAGCTC 1 cut(s) 474
Psp6I CCWGG 3 cut(s) 186, 414, 658
PspFI CCCAGC 1 cut(s) 821
PspGI CCWGG 3 cut(s) 186, 414, 658
PspN4I GGNNCC 3 cut(s) 446, 600, 891
PspPI GGNCC 3 cut(s) 662, 889, 905
PstNI CAGNNNCTG 2 cut(s) 193, 659
PsuI RGATCY 1 cut(s) 1111
PsyI GACNNNGTC 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 825
RsaI GTAC 3 cut(s) 60, 329, 681
RsaNI GTAC 3 cut(s) 59, 328, 680
RseI CAYNNNNRTG 2 cut(s) 300, 352
SacI GAGCTC 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 1059
SatI GCNGC 2 cut(s) 654, 834
Sau3AI GATC 3 cut(s) 496, 942, 1111
Sau96I GGNCC 3 cut(s) 662, 889, 905
SchI GAGTC 4 cut(s) 471, 850, 926, 929
ScrFI CCNGG 3 cut(s) 188, 416, 660
SduI GDGCHC 1 cut(s) 474
SfaNI GCATC 3 cut(s) 520, 719, 1192
SfuI TTCGAA 1 cut(s) 107
SinI GGWCC 3 cut(s) 662, 889, 905
SmiMI CAYNNNNRTG 2 cut(s) 300, 352
SpeI ACTAGT 1 cut(s) 565
Sse9I AATT 3 cut(s) 308, 634, 1063
SsiI CCGC 1 cut(s) 863
SspMI CTAG 4 cut(s) 132, 566, 776, 1107
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 3 cut(s) 186, 414, 658
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 5 cut(s) 262, 679, 702, 875, 1124
TaqI TCGA 3 cut(s) 107, 205, 912
TaqII GACCGA 1 cut(s) 549
TasI AATT 3 cut(s) 308, 634, 1063
TatI WGTACW 2 cut(s) 58, 679
TfiI GAWTC 6 cut(s) 93, 537, 772, 968, 1088, 1137
Tru1I TTAA 1 cut(s) 1059
Tru9I TTAA 1 cut(s) 1059
TscAI CASTG 6 cut(s) 90, 402, 682, 731, 942, 1129
TseFI GTSAC 3 cut(s) 81, 530, 673
TseI GCWGC 2 cut(s) 653, 833
Tsp45I GTSAC 3 cut(s) 81, 530, 673
TspDTI ATGAA 9 cut(s) 57, 133, 321, 627, 678, 822, 962, 1086, 1101
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 6 cut(s) 90, 402, 682, 731, 942, 1129
Tth111I GACNNNGTC 1 cut(s) 22
Van91I CCANNNNNTGG 2 cut(s) 388, 595
VpaK11BI GGWCC 3 cut(s) 662, 889, 905
XapI RAATTY 2 cut(s) 308, 634
XmnI GAANNNNTTC 2 cut(s) 195, 312
XspI CTAG 4 cut(s) 132, 566, 776, 1107
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.