Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027205.1

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Forward (+)

166 .. 600

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027205.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgtatgtcactgtacagcattcatcatcatcacagtgctttgcatctggtgcattccactgggttgcgaatgctccaccagaagagggcgctttctgcaatctgattctagcatttgatatggctaatgaggttttccatgaacttcctctgcccagctgtttagcagcaaaatcaaacttgaatatgactcttgcggtgttgaacggtttactttctctggtccctcggaataatggtccagtcgatgacgagtcttactcagactcagtgtggatcatgaaagaatacagcatggcagaatcttggactaagctattcagtattgatattcagggaggagcagtaaggagggtgctatcgttcacaaagaatggtgaagttatattacttaacaattcagacgaactggtctcatatgaatccaatacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

144

Amino Acids

15.83

Weight (kDa)

4.53

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	284
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	184, 205
AluBI	AGCT	2 cut(s)	159, 316
AluI	AGCT	2 cut(s)	159, 316
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	223, 239
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	223, 239
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbvI	GCAGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	223, 239
BmgT120I	GGNCC	2 cut(s)	223, 239
BmiI	GGNNCC	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	65, 242, 414
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	276, 282
BseNI	ACTGG	3 cut(s)	65, 242, 414
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	3 cut(s)	19, 53, 76
Bso31I	GGTCTC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	275, 281
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	65, 242, 414
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	13, 36, 209
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	262, 268, 312
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 96
BstV1I	GCAGC	1 cut(s)	179
BtsIMutI	CAGTG	4 cut(s)	9, 41, 58, 276
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	223, 239
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	3 cut(s)	140, 280, 295
CviJI	RGCY	3 cut(s)	125, 159, 316
CviKI_1	RGCY	3 cut(s)	125, 159, 316
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	3 cut(s)	262, 268, 312
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	223, 239
FaeI	CATG	3 cut(s)	143, 283, 298
FaiI	YATR	9 cut(s)	6, 122, 141, 188, 281, 296, 386, 418, 420
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	139, 279, 294
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	93
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	143, 283, 298
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	6 cut(s)	106, 190, 254, 266, 302, 422
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	212, 366
Hpy188I	TCNGA	4 cut(s)	105, 231, 265, 403
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	2 cut(s)	212, 366
HpyCH4III	ACNGT	3 cut(s)	13, 36, 209
HpyCH4V	TGCA	3 cut(s)	44, 53, 99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 96
HpyF3I	CTNAG	3 cut(s)	262, 268, 312
Hsp92II	CATG	3 cut(s)	143, 283, 298
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	79, 341
LpnPI	CCDG	8 cut(s)	33, 46, 93, 169, 206, 255, 320, 395
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	95
MluCI	AATT	1 cut(s)	397
MlyI	GAGTC	3 cut(s)	184, 260, 263
MnlI	CCTC	6 cut(s)	79, 124, 159, 237, 332, 345
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	159
Mva1269I	GAATGC	3 cut(s)	19, 53, 76
MwoI	GCNNNNNNNGC	2 cut(s)	50, 96
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	143, 283, 298
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	7
PagI	TCATGA	1 cut(s)	279
PctI	GAATGC	3 cut(s)	19, 53, 76
PfeI	GAWTC	3 cut(s)	106, 302, 422
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	3 cut(s)	184, 260, 262
PpsI	GAGTC	3 cut(s)	184, 260, 262
PspFI	CCCAGC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	223, 239
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	223, 239
SchI	GAGTC	3 cut(s)	184, 260, 263
SetI	ASST	4 cut(s)	135, 161, 318, 434
SfaNI	GCATC	1 cut(s)	53
SinI	GGWCC	2 cut(s)	223, 239
SmiMI	CAYNNNNRTG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	3 cut(s)	13, 36, 209
TaqI	TCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	397
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	106, 302, 422
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	4 cut(s)	16, 41, 65, 276
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	12, 156, 296, 435
TspRI	CASTG	4 cut(s)	16, 41, 65, 276
VpaK11BI	GGWCC	2 cut(s)	223, 239
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.