Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Reverse (-)

13335683 .. 13336882

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001277

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTCTGATTATCTCCCAAAGGAATGTCTGACAGAGATACTGGTTAGAGTACCAGTGAAGTCACTGCTGAGATTTAGGTGCGTTTCGAAAACATGGGATTCTCTCATTTCTAGCCCTGTATTCATCACCACCCACCTCAATCATGCTCATCATAAAGCTAGCCATGGTGAAAGAAGCAACCAGCAGGACCAGTTTATTCTGTTTCGACACTACTCTTCCTGTGATTCTATTAGTGAAGACGACCATGGTTATCGAACTTATATCACTAGCAAAGAGGAAGAGTGCTTTGCTTTGCACAAGGATGATGAATCGTTCCCCCACAATCCCACCATGAAACTCAAACCCCCACATAACAGCTTTGGGAAGTACTTCCCGATTGTGGGCTCGATGAATGGGATAGTCTGCATGATCGACTGGAATGAGTGTGTTTTTTGGAACCCTTCTTTGAACAAAACAATGAAGACCTCCTTTGAAACAGGATTTCCATCATTCTTACCTGTTAAGCATCTTCTTGGTCTTGGCTGTGACCTCATAACCAATGACCTCAAACTGGTAAGACTTTTCTATTATAAGGAACATGTCGTTCCACCTCTTGTTGAGATTTTCACCTTCAGTACTAAATCATGGAGAGAAGTTGCCGCCCCCGGTCCTATGTATATTGTGGTGCAAAGTAAATCTTCACCACAGGCCTTTGTGTCAGGTGCATTCCACTGGGTTGCTAACACTCCACCAGAACAGGGTTCTATATGCAATGTGATCGTGGCATTCGATATGGCTAATGAGGTTTTTTATGAAATTGCACTTCCTAGCTGTTTAGCTTCAAAGCGTCACTTGAATATGACAGTGGTTTTGTTGAACGGTTCACTTTCTCTGGTCCCAGATAATGAGGTCTATGGAGACTCATATTACTCGAGCTCTGCGTGGATCATGAAAGAGTATGGCGTGGCAGAATCTTGGACCAAGCTATTCGATATCGATATTGGTGAACAAGAAGTGAGAAGGGCGATCACTTTCAGAAACAATGGGGAACTTCTATTGATTAGCAATCGGGGTGAACTGTTATCATATGAACCCTATTCTCAAGAGACTACAGATCTTCACTTCGGCAGGTATATAAGGTATTCTGATGCACCAACTTATAAGACCGGCTCATATTTTGTAGATACTCAAATGGAGAGCCTTGTTTTGTTGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

400

Amino Acids

45.59

Weight (kDa)

5.76

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 39	5.3e-06	F-box-like
F-box	PF00646	5 - 41	1.7e-08	F-box domain
FBA_3	PF08268	100 - 336	1.6e-12	F-box associated beta propeller domain
FBA_1	PF07734	128 - 350	1.1e-17	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	570, 1140
Acc36I	ACCTGC	1 cut(s)	1098
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	1 cut(s)	932
AcuI	CTGAAG	1 cut(s)	595
AfaI	GTAC	3 cut(s)	51, 368, 616
AfiI	CCNNNNNNNGG	4 cut(s)	379, 380, 550, 737
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	6 cut(s)	448, 473, 822, 835, 856, 1192
AluBI	AGCT	6 cut(s)	158, 357, 810, 818, 915, 964
AluI	AGCT	6 cut(s)	158, 357, 810, 818, 915, 964
Alw21I	GWGCWC	1 cut(s)	917
Alw26I	GTCTC	2 cut(s)	891, 1079
AlwI	GGATC	1 cut(s)	932
Ama87I	CYCGRG	1 cut(s)	910
AoxI	GGCC	1 cut(s)	687
ArsI	GACNNNNNNTTYG	2 cut(s)	832, 864
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	4 cut(s)	187, 647, 874, 957
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	6 cut(s)	118, 179, 598, 672, 995, 1064
AsuII	TTCGAA	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	910
AvaII	GGWCC	4 cut(s)	187, 647, 874, 957
BanII	GRGCYC	2 cut(s)	386, 917
BbsI	GAAGAC	2 cut(s)	243, 467
Bbv12I	GWGCWC	1 cut(s)	917
BccI	CCATC	1 cut(s)	493
BcgI	CGANNNNNNTGC	2 cut(s)	739, 773
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	891, 1079
BfaI	CTAG	4 cut(s)	111, 159, 267, 807
BfmI	CTRYAG	1 cut(s)	1089
BfuAI	ACCTGC	1 cut(s)	1098
BglII	AGATCT	1 cut(s)	1093
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
BmcAI	AGTACT	2 cut(s)	368, 616
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	4 cut(s)	187, 647, 874, 957
BmeT110I	CYCGRG	1 cut(s)	910
BmgT120I	GGNCC	4 cut(s)	187, 647, 874, 957
BmiI	GGNNCC	2 cut(s)	437, 876
BmrFI	CCNGG	1 cut(s)	645
BmrI	ACTGGG	1 cut(s)	721
BmsI	GCATC	2 cut(s)	514, 1117
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	721
BpiI	GAAGAC	2 cut(s)	243, 467
Bpu14I	TTCGAA	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	1065
BpuMI	CCSGG	1 cut(s)	645
Bsa29I	ATCGAT	1 cut(s)	975
BsaBI	GATNNNNATC	1 cut(s)	484
BsaJI	CCNNGG	3 cut(s)	163, 244, 643
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 380, 550, 737
Bse118I	RCCGGY	1 cut(s)	1145
Bse1I	ACTGG	6 cut(s)	45, 53, 190, 419, 555, 716
Bse3DI	GCAATG	1 cut(s)	757
Bse8I	GATNNNNATC	1 cut(s)	484
BseCI	ATCGAT	1 cut(s)	975
BseDI	CCNNGG	3 cut(s)	163, 244, 643
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	484
BseLI	CCNNNNNNNGG	4 cut(s)	379, 380, 550, 737
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	6 cut(s)	45, 53, 190, 419, 555, 716
BshFI	GGCC	1 cut(s)	689
BshVI	ATCGAT	1 cut(s)	975
BsiHKAI	GWGCWC	1 cut(s)	917
BsiHKCI	CYCGRG	1 cut(s)	910
BsiSI	CCGG	2 cut(s)	645, 1146
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	4 cut(s)	379, 380, 550, 737
BsmAI	GTCTC	2 cut(s)	891, 1079
BsmFI	GGGAC	1 cut(s)	860
BsmI	GAATGC	2 cut(s)	704, 764
BsnI	GGCC	1 cut(s)	689
BsoBI	CYCGRG	1 cut(s)	910
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	386, 917
Bsp143I	GATC	5 cut(s)	408, 756, 924, 1005, 1093
Bsp19I	CCATGG	2 cut(s)	163, 244
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	1 cut(s)	60
BspDI	ATCGAT	1 cut(s)	975
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	2 cut(s)	437, 876
BspMI	ACCTGC	1 cut(s)	1098
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	932
BspT104I	TTCGAA	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	757
BsrFI	RCCGGY	1 cut(s)	1145
BsrI	ACTGG	6 cut(s)	45, 53, 190, 419, 555, 716
BssAI	RCCGGY	1 cut(s)	1145
BssECI	CCNNGG	3 cut(s)	163, 244, 643
BssMI	GATC	5 cut(s)	408, 756, 924, 1005, 1093
BssT1I	CCWWGG	2 cut(s)	163, 244
Bst4CI	ACNGT	3 cut(s)	844, 860, 1059
Bst6I	CTCTTC	2 cut(s)	220, 273
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	2 cut(s)	163, 244
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	5 cut(s)	411, 759, 927, 1008, 1096
BstMAI	GTCTC	2 cut(s)	891, 1079
BstMBI	GATC	5 cut(s)	408, 756, 924, 1005, 1093
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	643
BstSFI	CTRYAG	1 cut(s)	1089
BstV2I	GAAGAC	2 cut(s)	243, 467
BstX2I	RGATCY	1 cut(s)	1093
BstYI	RGATCY	1 cut(s)	1093
Bsu15I	ATCGAT	1 cut(s)	975
BsuRI	GGCC	1 cut(s)	689
BsuTUI	ATCGAT	1 cut(s)	975
BtgI	CCRYGG	2 cut(s)	163, 244
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	4 cut(s)	60, 62, 709, 849
BveI	ACCTGC	1 cut(s)	1098
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	927
Cfr10I	RCCGGY	1 cut(s)	1145
Cfr13I	GGNCC	4 cut(s)	187, 647, 874, 957
ClaI	ATCGAT	1 cut(s)	975
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	3 cut(s)	50, 367, 615
CviAII	CATG	9 cut(s)	93, 143, 164, 245, 331, 406, 578, 624, 928
CviQI	GTAC	3 cut(s)	50, 367, 615
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	5 cut(s)	410, 758, 926, 1007, 1095
DpnII	GATC	5 cut(s)	408, 756, 924, 1005, 1093
Eam1104I	CTCTTC	2 cut(s)	220, 273
EarI	CTCTTC	2 cut(s)	220, 273
Ecl136II	GAGCTC	1 cut(s)	915
Eco130I	CCWWGG	2 cut(s)	163, 244
Eco147I	AGGCCT	1 cut(s)	689
Eco24I	GRGCYC	2 cut(s)	386, 917
Eco32I	GATATC	1 cut(s)	973
Eco47I	GGWCC	4 cut(s)	187, 647, 874, 957
Eco53kI	GAGCTC	1 cut(s)	915
Eco57I	CTGAAG	1 cut(s)	595
Eco88I	CYCGRG	1 cut(s)	910
EcoICRI	GAGCTC	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	2 cut(s)	163, 244
EcoT38I	GRGCYC	2 cut(s)	386, 917
ErhI	CCWWGG	2 cut(s)	163, 244
FaeI	CATG	9 cut(s)	96, 146, 167, 248, 334, 409, 581, 627, 931
FalI	AAGNNNNNCTT	6 cut(s)	452, 484, 661, 693, 815, 847
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	9 cut(s)	92, 142, 163, 244, 330, 405, 577, 623, 927
FauNDI	CATATG	1 cut(s)	1066
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	386, 917
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	4 cut(s)	111, 159, 267, 807
GluI	GCNGC	1 cut(s)	639
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	2 cut(s)	645, 1146
HgaI	GACGC	1 cut(s)	815
Hin1II	CATG	9 cut(s)	96, 146, 167, 248, 334, 409, 581, 627, 931
HinfI	GANTC	5 cut(s)	98, 224, 308, 899, 950
HpaII	CCGG	2 cut(s)	645, 1146
HphI	GGTGA	6 cut(s)	118, 179, 598, 672, 995, 1064
Hpy166II	GTNNAC	3 cut(s)	863, 986, 1055
Hpy188I	TCNGA	4 cut(s)	7, 30, 1016, 1126
Hpy188III	TCNNGA	3 cut(s)	373, 928, 1082
Hpy8I	GTNNAC	3 cut(s)	863, 986, 1055
HpyAV	CCTTC	3 cut(s)	450, 619, 993
HpyCH4III	ACNGT	3 cut(s)	844, 860, 1059
HpyCH4V	TGCA	7 cut(s)	295, 405, 667, 704, 750, 800, 1130
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	9 cut(s)	96, 146, 167, 248, 334, 409, 581, 627, 931
Kzo9I	GATC	5 cut(s)	408, 756, 924, 1005, 1093
LweI	GCATC	2 cut(s)	514, 1117
MaeI	CTAG	4 cut(s)	111, 159, 267, 807
MaeIII	GTNAC	3 cut(s)	60, 524, 827
MalI	GATC	5 cut(s)	410, 758, 926, 1007, 1095
MboI	GATC	5 cut(s)	408, 756, 924, 1005, 1093
MboII	GAAGA	7 cut(s)	207, 248, 290, 472, 500, 669, 1088
MflI	RGATCY	1 cut(s)	1093
MhlI	GDGCHC	2 cut(s)	386, 917
MluCI	AATT	1 cut(s)	795
MlyI	GAGTC	1 cut(s)	893
MnlI	CCTC	8 cut(s)	146, 268, 475, 539, 554, 600, 775, 880
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	2 cut(s)	645, 1146
MspR9I	CCNGG	1 cut(s)	645
Mva1269I	GAATGC	2 cut(s)	704, 764
NciI	CCSGG	1 cut(s)	645
NcoI	CCATGG	2 cut(s)	163, 244
NdeI	CATATG	1 cut(s)	1066
NdeII	GATC	5 cut(s)	408, 756, 924, 1005, 1093
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	9 cut(s)	96, 146, 167, 248, 334, 409, 581, 627, 931
NlaIV	GGNNCC	2 cut(s)	437, 876
NmuCI	GTSAC	3 cut(s)	60, 524, 827
NspI	RCATGY	1 cut(s)	581
NspV	TTCGAA	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	910
PagI	TCATGA	1 cut(s)	927
PceI	AGGCCT	1 cut(s)	689
PciI	ACATGT	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	2 cut(s)	765, 917
PctI	GAATGC	2 cut(s)	704, 764
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	4 cut(s)	98, 224, 308, 950
PkrI	GCNGC	1 cut(s)	640
PleI	GAGTC	1 cut(s)	893
PpsI	GAGTC	1 cut(s)	893
PscI	ACATGT	1 cut(s)	577
PsiI	TTATAA	2 cut(s)	570, 1140
Psp124BI	GAGCTC	1 cut(s)	917
PspN4I	GGNNCC	2 cut(s)	437, 876
PspPI	GGNCC	4 cut(s)	187, 647, 874, 957
PspXI	VCTCGAGB	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	1093
RsaI	GTAC	3 cut(s)	51, 368, 616
RsaNI	GTAC	3 cut(s)	50, 367, 615
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	917
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	5 cut(s)	408, 756, 924, 1005, 1093
Sau96I	GGNCC	4 cut(s)	187, 647, 874, 957
ScaI	AGTACT	2 cut(s)	368, 616
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	2 cut(s)	386, 917
SfaNI	GCATC	2 cut(s)	514, 1117
SfcI	CTRYAG	1 cut(s)	1089
Sfr274I	CTCGAG	1 cut(s)	910
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	4 cut(s)	187, 647, 874, 957
SlaI	CTCGAG	1 cut(s)	910
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	910, 1080
SmoI	CTYRAG	2 cut(s)	910, 1080
Sse9I	AATT	1 cut(s)	795
SseBI	AGGCCT	1 cut(s)	689
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	4 cut(s)	111, 159, 267, 807
SstI	GAGCTC	1 cut(s)	917
StuI	AGGCCT	1 cut(s)	689
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	2 cut(s)	163, 244
TaaI	ACNGT	3 cut(s)	844, 860, 1059
TaqI	TCGA	9 cut(s)	86, 205, 253, 386, 411, 768, 911, 969, 975
TasI	AATT	1 cut(s)	795
TatI	WGTACW	2 cut(s)	366, 614
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	4 cut(s)	98, 224, 308, 950
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	4 cut(s)	60, 69, 716, 849
TseFI	GTSAC	3 cut(s)	60, 524, 827
Tsp45I	GTSAC	3 cut(s)	60, 524, 827
TspDTI	ATGAA	8 cut(s)	112, 321, 347, 404, 473, 807, 944, 1083
TspRI	CASTG	4 cut(s)	60, 69, 716, 849
VpaK11BI	GGWCC	4 cut(s)	187, 647, 874, 957
XceI	RCATGY	1 cut(s)	581
XhoI	CTCGAG	1 cut(s)	910
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	4 cut(s)	111, 159, 267, 807
ZrmI	AGTACT	2 cut(s)	368, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.