AT1G59675

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006179
Physical Location & Seq
Reverse (-)
21931833 .. 21932403
571 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59675.1

Sequence Viewer

Length: 495 bp
ATGTCCTCACGTGATAATGATACATCTCAATCAGACCATGTTCCTTTGGATTTAACCATTGAGATACTCTCAAGACTTCCTGCGAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTCTGGTCGGCCAACACCACCAGTCAAAATTTCATCAACTCCTTTGCGACTGGGTCCTTGGCATCGCGGCCTTCTGTACTGCTAACCGTCCGAAAAGGTGACATTCTGTTCGTTTTCTCGTATCCCGTAGACAAGAATAGTTCCGATGGTCAATTTACTTGTGTGGGAAGTTATCAATTGACAAACCCTAATTTTGGTAACCTCTCTCGTTACCACTTTCTGAAATGGACCCAATACAGAACAAAAAGCTACACTTCAAAGATGAGAAACAGTATTAGAGAAGTCGAAACTGTGGGTGATGAAGTTAGACTTTCTGACAAGTATATGTACACCATGAATGTTTACCCAAATCACATCGAAAGTCTTGTGTCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

164

Amino Acids

18.66

Weight (kDa)

9.41

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 49 8.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 184
AciI CCGC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 145
AcvI CACGTG 1 cut(s) 11
AfaI GTAC 2 cut(s) 195, 446
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 1 cut(s) 375
AluBI AGCT 2 cut(s) 118, 366
AluI AGCT 2 cut(s) 118, 366
Alw26I GTCTC 1 cut(s) 115
AoxI GGCC 2 cut(s) 126, 185
ApoI RAATTY 1 cut(s) 145
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspS9I GGNCC 2 cut(s) 171, 345
AsuHPI GGTGA 2 cut(s) 227, 425
AvaII GGWCC 2 cut(s) 171, 345
BbrPI CACGTG 1 cut(s) 11
BccI CCATC 1 cut(s) 257
BciVI GTATCC 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 115
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme18I GGWCC 2 cut(s) 171, 345
BmgT120I GGNCC 2 cut(s) 171, 345
BmiI GGNNCC 2 cut(s) 172, 347
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 188
BmuI ACTGGG 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpuEI CTTGAG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 2 cut(s) 138, 172
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 138, 172
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 128, 187
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 2 cut(s) 128, 187
Bsp1407I TGTACA 1 cut(s) 444
BspACI CCGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 128, 187
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 172, 347
BsrGI TGTACA 1 cut(s) 444
BsrI ACTGG 2 cut(s) 138, 172
BssECI CCNNGG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 205, 389, 409
BstAUI TGTACA 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 314
BstFNI CGCG 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 314
BstUI CGCG 1 cut(s) 184
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 128, 187
BtgZI GCGATG 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 171, 345
Csp6I GTAC 2 cut(s) 194, 445
CviAII CATG 2 cut(s) 38, 451
CviJI RGCY 4 cut(s) 118, 128, 187, 366
CviKI_1 RGCY 4 cut(s) 118, 128, 187, 366
CviQI GTAC 2 cut(s) 194, 445
DdeI CTNAG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 171, 345
Eco72I CACGTG 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 171
EcoO65I GGTNACC 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 2 cut(s) 41, 454
FaiI YATR 4 cut(s) 39, 441, 443, 452
FalI AAGNNNNNCTT 4 cut(s) 355, 387, 411, 443
FatI CATG 2 cut(s) 37, 450
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 128, 187
Hin1II CATG 2 cut(s) 41, 454
HphI GGTGA 2 cut(s) 227, 425
Hpy166II GTNNAC 3 cut(s) 247, 447, 460
Hpy188I TCNGA 5 cut(s) 34, 209, 262, 339, 433
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 3 cut(s) 247, 447, 460
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 3 cut(s) 205, 389, 409
HpyCH4IV ACGT 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 41, 454
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 4 cut(s) 93, 106, 151, 153
LweI GCATC 1 cut(s) 188
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 3 cut(s) 215, 314, 326
MfeI CAATTG 1 cut(s) 293
MluCI AATT 4 cut(s) 145, 269, 293, 307
MnlI CCTC 2 cut(s) 16, 329
MseI TTAA 1 cut(s) 53
MunI CAATTG 1 cut(s) 293
MvnI CGCG 1 cut(s) 184
NlaIII CATG 2 cut(s) 41, 454
NlaIV GGNNCC 2 cut(s) 172, 347
NmuCI GTSAC 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 186
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
Ppu21I YACGTR 1 cut(s) 11
PpuMI RGGWCCY 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 171
PspCI CACGTG 1 cut(s) 11
PspEI GGTNACC 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 172, 347
PspPI GGNCC 2 cut(s) 171, 345
PspPPI RGGWCCY 1 cut(s) 171
PsyI GACNNNGTC 1 cut(s) 169
RsaI GTAC 2 cut(s) 195, 446
RsaNI GTAC 2 cut(s) 194, 445
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 185
Sau96I GGNCC 2 cut(s) 171, 345
SetI ASST 5 cut(s) 13, 120, 217, 321, 368
SfaNI GCATC 1 cut(s) 188
SinI GGWCC 2 cut(s) 171, 345
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 4 cut(s) 145, 269, 293, 307
SsiI CCGC 1 cut(s) 184
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 205, 389, 409
TaiI ACGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 402, 474
TasI AATT 4 cut(s) 145, 269, 293, 307
TatI WGTACW 2 cut(s) 193, 444
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 3 cut(s) 139, 432, 467
TspGWI ACGGA 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 171, 345
XapI RAATTY 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.