MD12G1183100.v1.1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0006179
Physical Location & Seq
Reverse (-)
26337264 .. 26338802
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1183100.v1.1.491

Sequence Viewer

Length: 339 bp
ATGCCGAAAGCAGTTTTGAGGAGGCCGACGAGCTGTACACCGGGACCTCAAACGTTAAAACAAATTTGCCATGTTTCAAGTTACAAGGAGTCCCTTGCTTTTTTCGAGAAGCACGAGAGTATGGGACCAGATATTTTTGTTCGTTATGACATGTGGGTGATGAAAGAGTACGGTGTTGCTGAATCGTGGGCAAAAATATTAACTATATCTCGGGAATCAGAACTTGTGCACAGGCCGCTTGTTTTCAGGAGGAGGGGTGAAGTAGTGTTGGAATCGTCGTCTGTTTTTTATGGAAGTTTGAGATATCACTCGATGGACCCTGATACGAAACAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

113

Amino Acids

12.99

Weight (kDa)

8.97

Isoelectric Point (pI)

69.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclI AACGTT 1 cut(s) 53
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 2 cut(s) 37, 170
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 78
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 231
Alw44I GTGCAC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 2 cut(s) 23, 233
ApaLI GTGCAC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 3 cut(s) 44, 125, 316
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 169, 269
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 3 cut(s) 44, 125, 316
BaeGI GKGCMC 1 cut(s) 231
BauI CACGAG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 42
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 3 cut(s) 44, 125, 316
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 44, 125, 316
BmiI GGNNCC 3 cut(s) 45, 126, 318
BmrFI CCNGG 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
BseRI GAGGAG 2 cut(s) 34, 265
BseSI GKGCMC 1 cut(s) 231
BshFI GGCC 2 cut(s) 25, 235
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 3 cut(s) 57, 76, 138
BsmFI GGGAC 3 cut(s) 57, 76, 138
BsnI GGCC 2 cut(s) 25, 235
BsoBI CYCGRG 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 35
BspACI CCGC 1 cut(s) 236
BspANI GGCC 2 cut(s) 25, 235
BspLI GGNNCC 3 cut(s) 45, 126, 318
BsrGI TGTACA 1 cut(s) 35
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 173, 333
BstAUI TGTACA 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 25, 235
Cfr13I GGNCC 3 cut(s) 44, 125, 316
Csp6I GTAC 2 cut(s) 36, 169
CviAII CATG 2 cut(s) 71, 151
CviJI RGCY 3 cut(s) 25, 33, 235
CviKI_1 RGCY 3 cut(s) 25, 33, 235
CviQI GTAC 2 cut(s) 36, 169
Eco32I GATATC 1 cut(s) 305
Eco47I GGWCC 3 cut(s) 44, 125, 316
Eco88I CYCGRG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 44
EcoRV GATATC 1 cut(s) 305
FaeI CATG 2 cut(s) 74, 154
FaiI YATR 6 cut(s) 72, 122, 147, 152, 206, 291
FaqI GGGAC 3 cut(s) 57, 76, 138
FatI CATG 2 cut(s) 70, 150
Fnu4HI GCNGC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 2 cut(s) 25, 235
HapII CCGG 1 cut(s) 41
Hin1II CATG 2 cut(s) 74, 154
HinfI GANTC 4 cut(s) 89, 182, 215, 272
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 169, 269
Hpy166II GTNNAC 2 cut(s) 38, 229
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 106, 212, 247
Hpy8I GTNNAC 2 cut(s) 38, 229
Hpy99I CGWCG 2 cut(s) 31, 280
HpyCH4III ACNGT 2 cut(s) 173, 333
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 2 cut(s) 74, 154
LpnPI CCDG 5 cut(s) 54, 141, 217, 232, 333
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 63
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 5 cut(s) 12, 15, 57, 243, 246
MseI TTAA 3 cut(s) 56, 200, 337
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 42
NlaIII CATG 2 cut(s) 74, 154
NlaIV GGNNCC 3 cut(s) 45, 126, 318
NspI RCATGY 1 cut(s) 154
PciI ACATGT 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 3 cut(s) 182, 215, 272
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 44
PscI ACATGT 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 44
PspN4I GGNNCC 3 cut(s) 45, 126, 318
PspPI GGNCC 3 cut(s) 44, 125, 316
PspPPI RGGWCCY 1 cut(s) 44
RsaI GTAC 2 cut(s) 37, 170
RsaNI GTAC 2 cut(s) 36, 169
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 56, 200, 337
SatI GCNGC 1 cut(s) 236
Sau96I GGNCC 3 cut(s) 44, 125, 316
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 231
SetI ASST 3 cut(s) 35, 49, 56
SinI GGWCC 3 cut(s) 44, 125, 316
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 236
SspI AATATT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 173, 333
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 105, 311
TasI AATT 1 cut(s) 63
TatI WGTACW 1 cut(s) 35
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 3 cut(s) 182, 215, 272
Tru1I TTAA 3 cut(s) 56, 200, 337
Tru9I TTAA 3 cut(s) 56, 200, 337
TspDTI ATGAA 1 cut(s) 176
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 3 cut(s) 44, 125, 316
XapI RAATTY 1 cut(s) 63
XceI RCATGY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.