Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Reverse (-)

13338568 .. 13339583

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGAAAGAAGCAACCAGCAGGACCAGTTTATCCTGTTATTATGTGAGCGACGACAACCATGGTTGTGAAATTAACATCACTAGCAGAGGGGAAAAGAGCTTTGCTTTGCACAAGGATGATGAATCCTTCCCCAACAATCCCACCTTGAAACTCAAACCCCCACATAACAACTTTCGGAAGTACTTACTGATTGTGGGCTCGATGAATGGGATCGTCTGCATGGTCGACTGGAATAAGTGTGTTTTTTGGAACCCTTCTTTGAACAAAATAATGAAAACCTCCTTTGAAACAGGATTTTCATCATCCTTTCCTGTTAACCATCTTCTTGGTCTTGGCTGTGACCCCATTACCAATGACCTCAAGCTGGCCTTTGTGTCAGGTGCATTCCACTCGGTTGCGCATACTCCACCAGGACAGGGTTCTTTGTGCAATGTGATCGTGGCATTCGATATGGCTAATGAGGTTTTCAATGAAATTGCACTTCCCAGCTGTATAGCTTCAAAGCCTCACTTGAATATGACAGTGGTTTTGTTGAACGGTTCACTTTCTCTGGTCCCAGATAATATGTTCCATGCCGGCTCAAATTATTCGGGCTCCATGTGGATCATGAAAGAGTATGGCGTTGCAGAATCTTGGACTAAACTATTCGATATCGATACTGGGGAACAAGGAGTGGGGAGGGTGATCACTTTCAGAAACAATGGGGAACTTCTATTGATTAGCCATTTGGGTGGACTGTTATCGTATGAATCCCATACCCAAGAGACTAGATATCTTCATTTTGGCAGGACTGTACCCTATTCTGATAAACCTGCTTATAACATTGGCTCATATTTTGTAGACACTTGCATGGAGAGTTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

291

Amino Acids

32.18

Weight (kDa)

5.86

Isoelectric Point (pI)

25.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
Acc16I	TGCGCA	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	823
AccI	GTMKAC	2 cut(s)	228, 843
AclWI	GGATC	2 cut(s)	221, 614
AfaI	GTAC	2 cut(s)	185, 798
AfiI	CCNNNNNNNGG	2 cut(s)	367, 419
AgsI	TTSAA	8 cut(s)	151, 265, 290, 472, 504, 517, 538, 869
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	4 cut(s)	102, 367, 492, 500
AluI	AGCT	4 cut(s)	102, 367, 492, 500
Alw26I	GTCTC	1 cut(s)	761
AlwI	GGATC	2 cut(s)	221, 614
AoxI	GGCC	1 cut(s)	369
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	24, 556
AsuHPI	GGTGA	2 cut(s)	16, 697
AvaII	GGWCC	2 cut(s)	24, 556
BanII	GRGCYC	2 cut(s)	203, 599
BccI	CCATC	1 cut(s)	330
BcgI	CGANNNNNNTGC	4 cut(s)	375, 409, 421, 455
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	2 cut(s)	84, 771
BfuAI	ACCTGC	1 cut(s)	823
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	2 cut(s)	24, 556
BmgT120I	GGNCC	2 cut(s)	24, 556
BmiI	GGNNCC	3 cut(s)	254, 558, 598
BmrFI	CCNGG	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	672
BmuI	ACTGGG	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 419
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	3 cut(s)	27, 236, 667
Bse3DI	GCAATG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	414
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	124, 305
BseJI	GATNNNNATC	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	367, 419
BseMI	GCAATG	1 cut(s)	439
BseNI	ACTGG	3 cut(s)	27, 236, 667
BseYI	CCCAGC	1 cut(s)	488
BshFI	GGCC	1 cut(s)	371
BshVI	ATCGAT	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	2 cut(s)	367, 419
BsmAI	GTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	542
BsmI	GAATGC	2 cut(s)	386, 446
BsnI	GGCC	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	203, 599
Bsp143I	GATC	4 cut(s)	213, 438, 606, 687
Bsp19I	CCATGG	1 cut(s)	61
BspANI	GGCC	1 cut(s)	371
BspDI	ATCGAT	1 cut(s)	657
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	3 cut(s)	254, 558, 598
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	2 cut(s)	221, 614
BsrDI	GCAATG	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	3 cut(s)	27, 236, 667
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	4 cut(s)	213, 438, 606, 687
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	4 cut(s)	526, 542, 741, 796
BstC8I	GCNNGC	2 cut(s)	369, 580
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	124, 305
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	4 cut(s)	216, 441, 609, 690
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	4 cut(s)	213, 438, 606, 687
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstXI	CCANNNNNNTGG	2 cut(s)	329, 734
Bsu15I	ATCGAT	1 cut(s)	657
BsuRI	GGCC	1 cut(s)	371
BsuTUI	ATCGAT	1 cut(s)	657
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	124, 305
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	369, 580
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	2 cut(s)	24, 556
ClaI	ATCGAT	1 cut(s)	657
Csp6I	GTAC	2 cut(s)	184, 797
CviAII	CATG	6 cut(s)	62, 223, 575, 601, 610, 853
CviQI	GTAC	2 cut(s)	184, 797
DpnI	GATC	4 cut(s)	215, 440, 608, 689
DpnII	GATC	4 cut(s)	213, 438, 606, 687
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	203, 599
Eco32I	GATATC	2 cut(s)	655, 776
Eco47I	GGWCC	2 cut(s)	24, 556
EcoRII	CCWGG	1 cut(s)	412
EcoRV	GATATC	2 cut(s)	655, 776
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	2 cut(s)	203, 599
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	6 cut(s)	65, 226, 578, 604, 613, 856
FalI	AAGNNNNNCTT	4 cut(s)	356, 388, 497, 529
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	6 cut(s)	61, 222, 574, 600, 609, 852
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	2 cut(s)	228, 843
FokI	GGATG	2 cut(s)	131, 292
FriOI	GRGCYC	2 cut(s)	203, 599
FspBI	CTAG	2 cut(s)	84, 771
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	579
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	6 cut(s)	65, 226, 578, 604, 613, 856
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	2 cut(s)	229, 319
HindII	GTYRAC	2 cut(s)	229, 319
HinfI	GANTC	3 cut(s)	125, 632, 752
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	2 cut(s)	16, 697
Hpy166II	GTNNAC	5 cut(s)	229, 319, 545, 737, 844
Hpy188I	TCNGA	3 cut(s)	180, 698, 808
Hpy188III	TCNNGA	1 cut(s)	610
Hpy8I	GTNNAC	5 cut(s)	229, 319, 545, 737, 844
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	139, 267
HpyCH4III	ACNGT	4 cut(s)	526, 542, 741, 796
HpyCH4V	TGCA	7 cut(s)	112, 222, 386, 432, 482, 629, 852
Hsp92II	CATG	6 cut(s)	65, 226, 578, 604, 613, 856
HspAI	GCGC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	578
KroNI	GCCGGC	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	687
KspAI	GTTAAC	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	213, 438, 606, 687
LmnI	GCTCC	1 cut(s)	602
MaeI	CTAG	2 cut(s)	84, 771
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	4 cut(s)	215, 440, 608, 689
MboI	GATC	4 cut(s)	213, 438, 606, 687
MboII	GAAGA	2 cut(s)	317, 770
MhlI	GDGCHC	2 cut(s)	203, 599
MluCI	AATT	3 cut(s)	72, 477, 586
MnlI	CCTC	6 cut(s)	83, 292, 371, 457, 519, 675
MroNI	GCCGGC	1 cut(s)	578
MseI	TTAA	2 cut(s)	75, 318
MslI	CAYNNNNRTG	4 cut(s)	66, 117, 732, 851
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	2 cut(s)	386, 446
MvaI	CCWGG	1 cut(s)	414
NaeI	GCCGGC	1 cut(s)	580
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	213, 438, 606, 687
NgoMIV	GCCGGC	1 cut(s)	578
NlaIII	CATG	6 cut(s)	65, 226, 578, 604, 613, 856
NlaIV	GGNNCC	3 cut(s)	254, 558, 598
NmuCI	GTSAC	1 cut(s)	341
NsbI	TGCGCA	1 cut(s)	402
PagI	TCATGA	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PctI	GAATGC	2 cut(s)	386, 446
PdiI	GCCGGC	1 cut(s)	580
PfeI	GAWTC	3 cut(s)	125, 632, 752
PsiI	TTATAA	1 cut(s)	822
Psp6I	CCWGG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	254, 558, 598
PspPI	GGNCC	2 cut(s)	24, 556
PvuII	CAGCTG	1 cut(s)	492
RsaI	GTAC	2 cut(s)	185, 798
RsaNI	GTAC	2 cut(s)	184, 797
RseI	CAYNNNNRTG	4 cut(s)	66, 117, 732, 851
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	75, 318
Sau3AI	GATC	4 cut(s)	213, 438, 606, 687
Sau96I	GGNCC	2 cut(s)	24, 556
ScaI	AGTACT	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	203, 599
SinI	GGWCC	2 cut(s)	24, 556
SmiMI	CAYNNNNRTG	4 cut(s)	66, 117, 732, 851
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	72, 477, 586
SspMI	CTAG	2 cut(s)	84, 771
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	4 cut(s)	526, 542, 741, 796
TaqI	TCGA	5 cut(s)	203, 228, 450, 651, 657
TasI	AATT	3 cut(s)	72, 477, 586
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	125, 632, 752
Tru1I	TTAA	2 cut(s)	75, 318
Tru9I	TTAA	2 cut(s)	75, 318
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	8 cut(s)	138, 221, 290, 291, 489, 626, 765, 770
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	2 cut(s)	24, 556
XmiI	GTMKAC	2 cut(s)	228, 843
XspI	CTAG	2 cut(s)	84, 771
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.