Rroxscaffold_2G00115710

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006179
Physical Location & Seq
Reverse (-)
42120371 .. 42123814
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115710.1

Sequence Viewer

Length: 948 bp
ATGCATCGTCTTGGATTTGGCTATGACCGAACTACAGATGACTATAAGTTTGTGTACCTTGCAAGGGGTTACTATTCAGAGCTTGCACCTGAGTCTGAGATCTACACGCTTAACAATAGCTCAAAGCGAAAATCTGCTCTCCCTTGTCCACTGAACATCGCCGAACATAATTCAACTCCATCAGAGGCCTTTGTGTCTGGTGCACTTCACTGGGTTTTGTGTAGTTATCCACCGAATATGAGTAACTTTCACTATATGATCCTGGCATTTGATATGAATACTGAGCTGGCCGACCAAAATCGCTGTATTCTGTGGAACCCTTCGGTGAACAGAGTCATGGAGCTCCTGTTTGCATTTCAATATCCAGATCGTTCTGTCATGCATCGTCTTGGATTTGGCTGTGACCGAATTACTAATGACTACAAGCTGGTAAGACTAGTCTATTTTGGAAGAAAAGACCATTATGTGGTTCCACCTGTGGTTGAGATTTTCACTCTTAGCACAAATTCCTGGCGACAGCTTGCAGCTCCTGGTCCTATGTATATCACTGTACAACATTCATCGTCATCACAGGCCTTTGCATCTGGTGCATTCCTCTGGATTGCAAATGCTCCACCAGAAGAGGGCACTTTCTGCAATCTGATTCTAGCATTTGATATAGCTAATGAGTGTTGTAACGGATTACTTTCTCTGGTCCCTCGGAATAATGGTCCAGTCAATGACAAGTCTTACTCAGACTCGGTGTGGATCATGAAAGAAAACGGGATGGCAGAATCTTGGACTAAGCTATTCAGTATTGATATTCAGGGAGGAGCAATAAGGAGGGTGCTATCGTTCACAAAGAATGGTGAAGTTATAGTACTTGACGATTCAGGCGAACTGGTCTCATATGAATCCAATACCCAACAAACTAGGGATCTTGAATACAGTGTAGGCAAGAGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

315

Amino Acids

35.71

Weight (kDa)

5.67

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 98 - 232 9.4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AclWI GGATC 3 cut(s) 253, 755, 924
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 505
AfaI GTAC 3 cut(s) 56, 552, 861
AfiI CCNNNNNNNGG 3 cut(s) 64, 466, 623
AgsI TTSAA 3 cut(s) 174, 359, 923
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 3 cut(s) 261, 509, 529
AluBI AGCT 9 cut(s) 82, 120, 286, 343, 427, 520, 527, 662, 787
AluI AGCT 9 cut(s) 82, 120, 286, 343, 427, 520, 527, 662, 787
Alw21I GWGCWC 2 cut(s) 205, 345
Alw26I GTCTC 1 cut(s) 889
Alw44I GTGCAC 1 cut(s) 201
AlwI GGATC 3 cut(s) 253, 755, 924
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 3 cut(s) 186, 288, 573
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 505
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspS9I GGNCC 3 cut(s) 533, 694, 710
AsuHPI GGTGA 2 cut(s) 337, 860
AvaII GGWCC 3 cut(s) 533, 694, 710
BaeGI GKGCMC 2 cut(s) 205, 629
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 843, 875
Bbv12I GWGCWC 2 cut(s) 205, 345
BbvI GCAGC 1 cut(s) 536
BccI CCATC 2 cut(s) 187, 760
BciT130I CCWGG 3 cut(s) 263, 511, 531
BcoDI GTCTC 1 cut(s) 889
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 3 cut(s) 437, 647, 912
BfmI CTRYAG 1 cut(s) 33
BglII AGATCT 1 cut(s) 99
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
BmcAI AGTACT 1 cut(s) 861
Bme1390I CCNGG 3 cut(s) 263, 511, 531
Bme18I GGWCC 3 cut(s) 533, 694, 710
BmgT120I GGNCC 3 cut(s) 533, 694, 710
BmiI GGNNCC 3 cut(s) 317, 471, 696
BmrFI CCNGG 3 cut(s) 263, 511, 531
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 3 cut(s) 13, 391, 590
BmuI ACTGGG 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 889
BsaJI CCNNGG 1 cut(s) 698
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 466, 623
Bse1I ACTGG 3 cut(s) 215, 713, 885
BseBI CCWGG 3 cut(s) 263, 511, 531
BseDI CCNNGG 1 cut(s) 698
BseGI GGATG 1 cut(s) 771
BseLI CCNNNNNNNGG 3 cut(s) 64, 466, 623
BseMII CTCAG 4 cut(s) 81, 87, 273, 747
BseNI ACTGG 3 cut(s) 215, 713, 885
BseRI GAGGAG 1 cut(s) 825
BseSI GKGCMC 2 cut(s) 205, 629
BseXI GCAGC 1 cut(s) 536
BshFI GGCC 3 cut(s) 188, 290, 575
BsiHKAI GWGCWC 2 cut(s) 205, 345
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 3 cut(s) 64, 466, 623
BsmAI GTCTC 1 cut(s) 889
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 3 cut(s) 188, 290, 575
Bso31I GGTCTC 1 cut(s) 889
Bsp1286I GDGCHC 3 cut(s) 205, 345, 629
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 5 cut(s) 99, 258, 367, 747, 916
BspANI GGCC 3 cut(s) 188, 290, 575
BspCNI CTCAG 4 cut(s) 82, 88, 274, 746
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 3 cut(s) 317, 471, 696
BspPI GGATC 3 cut(s) 253, 755, 924
BspTNI GGTCTC 1 cut(s) 889
BsrGI TGTACA 1 cut(s) 550
BsrI ACTGG 3 cut(s) 215, 713, 885
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 5 cut(s) 99, 258, 367, 747, 916
Bst2UI CCWGG 3 cut(s) 263, 511, 531
Bst4CI ACNGT 2 cut(s) 550, 929
Bst6I CTCTTC 1 cut(s) 615
BstAPI GCANNNNNTGC 2 cut(s) 587, 633
BstAUI TGTACA 1 cut(s) 550
BstC8I GCNNGC 3 cut(s) 84, 288, 522
BstDEI CTNAG 6 cut(s) 90, 96, 282, 497, 733, 783
BstF5I GGATG 1 cut(s) 771
BstKTI GATC 5 cut(s) 102, 261, 370, 750, 919
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 5 cut(s) 99, 258, 367, 747, 916
BstMWI GCNNNNNNNGC 2 cut(s) 587, 633
BstNI CCWGG 3 cut(s) 263, 511, 531
BstSCI CCNGG 3 cut(s) 261, 509, 529
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 2 cut(s) 205, 629
BstV1I GCAGC 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 99, 916
BstYI RGATCY 2 cut(s) 99, 916
BsuRI GGCC 3 cut(s) 188, 290, 575
BtgZI GCGATG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 771
BtsIMutI CAGTG 4 cut(s) 149, 208, 546, 934
Cac8I GCNNGC 3 cut(s) 84, 288, 522
CaiI CAGNNNCTG 1 cut(s) 530
CciI TCATGA 1 cut(s) 750
Cfr13I GGNCC 3 cut(s) 533, 694, 710
Csp6I GTAC 3 cut(s) 55, 551, 860
CviAII CATG 3 cut(s) 337, 379, 751
CviQI GTAC 3 cut(s) 55, 551, 860
DdeI CTNAG 6 cut(s) 90, 96, 282, 497, 733, 783
DpnI GATC 5 cut(s) 101, 260, 369, 749, 918
DpnII GATC 5 cut(s) 99, 258, 367, 747, 916
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Ecl136II GAGCTC 1 cut(s) 343
Eco147I AGGCCT 2 cut(s) 188, 575
Eco24I GRGCYC 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 889
Eco47I GGWCC 3 cut(s) 533, 694, 710
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoRII CCWGG 3 cut(s) 261, 509, 529
EcoT22I ATGCAT 2 cut(s) 6, 384
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 3 cut(s) 340, 382, 754
FaqI GGGAC 1 cut(s) 680
FatI CATG 3 cut(s) 336, 378, 750
FauNDI CATATG 1 cut(s) 889
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 1 cut(s) 778
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 3 cut(s) 437, 647, 912
GluI GCNGC 1 cut(s) 525
HaeIII GGCC 3 cut(s) 188, 290, 575
Hin1II CATG 3 cut(s) 340, 382, 754
HinfI GANTC 8 cut(s) 92, 333, 643, 737, 773, 869, 893, 942
HphI GGTGA 2 cut(s) 337, 860
Hpy166II GTNNAC 5 cut(s) 55, 149, 203, 328, 837
Hpy188I TCNGA 6 cut(s) 79, 97, 184, 642, 702, 736
Hpy188III TCNNGA 4 cut(s) 365, 598, 751, 920
Hpy8I GTNNAC 5 cut(s) 55, 149, 203, 328, 837
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 2 cut(s) 550, 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 633
HpyF3I CTNAG 6 cut(s) 90, 96, 282, 497, 733, 783
Hsp92II CATG 3 cut(s) 340, 382, 754
Kzo9I GATC 5 cut(s) 99, 258, 367, 747, 916
LmnI GCTCC 5 cut(s) 340, 348, 532, 616, 812
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 3 cut(s) 13, 391, 590
MaeI CTAG 3 cut(s) 437, 647, 912
MaeIII GTNAC 4 cut(s) 68, 242, 401, 674
MalI GATC 5 cut(s) 101, 260, 369, 749, 918
MboI GATC 5 cut(s) 99, 258, 367, 747, 916
MboII GAAGA 2 cut(s) 462, 632
MflI RGATCY 2 cut(s) 99, 916
MhlI GDGCHC 3 cut(s) 205, 345, 629
MluCI AATT 3 cut(s) 169, 408, 505
MlyI GAGTC 3 cut(s) 101, 342, 731
MnlI CCTC 6 cut(s) 178, 605, 616, 708, 803, 816
Mph1103I ATGCAT 2 cut(s) 6, 384
MseI TTAA 1 cut(s) 111
MspR9I CCNGG 3 cut(s) 263, 511, 531
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 3 cut(s) 263, 511, 531
MwoI GCNNNNNNNGC 2 cut(s) 587, 633
NdeI CATATG 1 cut(s) 889
NdeII GATC 5 cut(s) 99, 258, 367, 747, 916
NlaIII CATG 3 cut(s) 340, 382, 754
NlaIV GGNNCC 3 cut(s) 317, 471, 696
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 2 cut(s) 6, 384
PagI TCATGA 1 cut(s) 750
PceI AGGCCT 2 cut(s) 188, 575
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 5 cut(s) 643, 773, 869, 893, 942
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 3 cut(s) 100, 341, 731
PpsI GAGTC 3 cut(s) 100, 341, 731
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 261, 509, 529
PspGI CCWGG 3 cut(s) 261, 509, 529
PspN4I GGNNCC 3 cut(s) 317, 471, 696
PspPI GGNCC 3 cut(s) 533, 694, 710
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 2 cut(s) 99, 916
RsaI GTAC 3 cut(s) 56, 552, 861
RsaNI GTAC 3 cut(s) 55, 551, 860
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 5 cut(s) 99, 258, 367, 747, 916
Sau96I GGNCC 3 cut(s) 533, 694, 710
ScaI AGTACT 1 cut(s) 861
SchI GAGTC 3 cut(s) 101, 342, 731
ScrFI CCNGG 3 cut(s) 263, 511, 531
SduI GDGCHC 3 cut(s) 205, 345, 629
SfaNI GCATC 3 cut(s) 13, 391, 590
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 3 cut(s) 533, 694, 710
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 3 cut(s) 169, 408, 505
SseBI AGGCCT 2 cut(s) 188, 575
SspMI CTAG 3 cut(s) 437, 647, 912
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 2 cut(s) 188, 575
StyD4I CCNGG 3 cut(s) 261, 509, 529
TaaI ACNGT 2 cut(s) 550, 929
TaqII GACCGA 2 cut(s) 42, 420
TasI AATT 3 cut(s) 169, 408, 505
TatI WGTACW 2 cut(s) 550, 859
TfiI GAWTC 5 cut(s) 643, 773, 869, 893, 942
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 4 cut(s) 156, 215, 553, 934
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 4 cut(s) 290, 549, 767, 906
TspGWI ACGGA 1 cut(s) 693
TspRI CASTG 4 cut(s) 156, 215, 553, 934
Van91I CCANNNNNTGG 1 cut(s) 466
VneI GTGCAC 1 cut(s) 201
VpaK11BI GGWCC 3 cut(s) 533, 694, 710
XapI RAATTY 1 cut(s) 505
XspI CTAG 3 cut(s) 437, 647, 912
ZrmI AGTACT 1 cut(s) 861
Zsp2I ATGCAT 2 cut(s) 6, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.