Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Forward (+)

24638522 .. 24639745

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTCTGATTATCTCCCGAATGAATGTTTGACAGAGATACTGGTCAGAGTACCGGTGAAGTCACTGTTGAGATTCAGGTGTGTTTCGAAAACATGGCATTCTCTCATTTCTAGCCCTGCATTCATCACTAACCACCTCAATCATGCTCATCATAAAGCTAGCCAGGGTGAAAGGAGCAACCTGCTGGACCAGTTTATTTTGTTTCGACATTACTCCTCTTACGAGTATTGTGATGAAGACGACCATGGTTTTCGAACTTATGTCACTACCAATGATGAAGAGTGCTTTGCTTTGCACAAAGATGATGAATCCTTCCCCCACAATCCCACCTTGAAACTCAAGCCGGCACACAAATTCTCGTCGGAGTACTTCCGGATTGTGGGCTCCATGAATGGGATAGTCTGCATGGTCGCAAGGTCGGAGTGTTTTTTCTGGAACCCTTCTTTGAACAAAACAGTGAAGACCTCCTTTCAAACAGGCTTTCCATCGTGGTTTCCTGTTAAACAGATTCTTGGTTTTGGCTGTGACCACATTACCAAGGACCTCAAGCTGGTAAGACTTTTCTATTCCAAGGAAGAAAACCATTATGTTGTTCCACCTCTAGTCGAGATTTTCACCCTCAGTACTAACTCATGGAGAGAAGTTGCCGCCCCCAGTCCTATGTATATTCTGGTGCAAAGTAAGTCTTCACCACAGGCCTTTATGTCAGGTGCATTCCACTGGGTTGCACATACTCCACCAGGACAGGGTTCTTCGTGCAATGTGATCATGGCCTTCGATATGGTCAATGAGGTCTTTTATGAAATTGCACTTCCTAGCTGTTTAGCTTCGAAGCCTCACTTGAATATGACAGTGGTTTTGATGAATGGTTCACTATCTCTGGTCCCGGATAATGAGGTCTGTTTAGATTCATACTACTCAGGCTCCGTGTGGATCATGAAAGAGTATGGCGTGGTAGAATCATGGACTAAGCTATTCGATATTGATGTTGGCAAACAAGGAGTGAGTAGGGTGATCACTTTCAGAAACAACGGAGAACTTCTATTGATCAAACGTTGGGATGAACTGTTCTCATATGAACCCTATACCCAAGAGAGTAGAGATCTTCATTTCGGTGGGTATGTAAGAGATTCTGATAAATCTACTTATAAAAACGACTCATATTTTGTAGATACTCACATGGAGAGCCTTGTTTTGTTGAATGAATGCACTGATGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

408

Amino Acids

46.75

Weight (kDa)

5.7

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 40	1.6e-07	F-box-like
F-box	PF00646	5 - 41	2.4e-11	F-box domain
FBA_1	PF07734	100 - 350	1.4e-18	F-box associated beta propeller domain
FBA_3	PF08268	115 - 377	1.7e-15	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1149
Acc36I	ACCTGC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	372
AciI	CCGC	1 cut(s)	648
AclI	AACGTT	1 cut(s)	1054
AclWI	GGATC	1 cut(s)	941
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	3 cut(s)	51, 368, 625
AfiI	CCNNNNNNNGG	4 cut(s)	379, 393, 550, 746
AgeI	ACCGGT	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	334, 448, 473, 844, 1201
AjnI	CCWGG	2 cut(s)	162, 739
AloI	GAACNNNNNNTCC	2 cut(s)	1052, 1084
AluBI	AGCT	5 cut(s)	158, 550, 819, 827, 973
AluI	AGCT	5 cut(s)	158, 550, 819, 827, 973
AlwI	GGATC	1 cut(s)	941
Aor13HI	TCCGGA	1 cut(s)	372
AoxI	GGCC	2 cut(s)	696, 771
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	4 cut(s)	841, 873, 1148, 1180
AsiGI	ACCGGT	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	187, 541, 883
AsuC2I	CCSGG	1 cut(s)	887
AsuHPI	GGTGA	5 cut(s)	67, 179, 607, 681, 1024
AsuII	TTCGAA	3 cut(s)	86, 253, 830
AsuNHI	GCTAGC	1 cut(s)	158
AvaII	GGWCC	3 cut(s)	187, 541, 883
BanII	GRGCYC	1 cut(s)	386
BbsI	GAAGAC	3 cut(s)	243, 467, 678
BccI	CCATC	1 cut(s)	493
BciT130I	CCWGG	2 cut(s)	164, 741
BclI	TGATCA	3 cut(s)	765, 1014, 1047
BcnI	CCSGG	1 cut(s)	887
BfaI	CTAG	4 cut(s)	111, 159, 602, 816
BfuAI	ACCTGC	1 cut(s)	189
BglII	AGATCT	1 cut(s)	1102
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
BmcAI	AGTACT	2 cut(s)	368, 625
Bme1390I	CCNGG	3 cut(s)	164, 741, 887
Bme18I	GGWCC	3 cut(s)	187, 541, 883
BmgT120I	GGNCC	3 cut(s)	187, 541, 883
BmiI	GGNNCC	4 cut(s)	385, 437, 885, 925
BmrFI	CCNGG	3 cut(s)	164, 741, 887
BmrI	ACTGGG	2 cut(s)	648, 730
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	2 cut(s)	648, 730
BpiI	GAAGAC	3 cut(s)	243, 467, 678
Bpu14I	TTCGAA	3 cut(s)	86, 253, 830
BpuEI	CTTGAG	2 cut(s)	323, 530
BpuMI	CCSGG	1 cut(s)	887
BsaJI	CCNNGG	4 cut(s)	163, 244, 537, 570
BsaWI	WCCGGW	2 cut(s)	52, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	908, 938
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 393, 550, 746
Bse118I	RCCGGY	2 cut(s)	52, 343
Bse1I	ACTGG	4 cut(s)	45, 190, 654, 725
Bse3DI	GCAATG	1 cut(s)	766
BseAI	TCCGGA	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	164, 741
BseDI	CCNNGG	4 cut(s)	163, 244, 537, 570
BseGI	GGATG	1 cut(s)	1066
BseLI	CCNNNNNNNGG	4 cut(s)	379, 393, 550, 746
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	2 cut(s)	634, 933
BseNI	ACTGG	4 cut(s)	45, 190, 654, 725
BseRI	GAGGAG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	698, 773
BshTI	ACCGGT	1 cut(s)	52
BsiSI	CCGG	4 cut(s)	53, 344, 373, 887
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	4 cut(s)	379, 393, 550, 746
BsmFI	GGGAC	1 cut(s)	869
BsmI	GAATGC	4 cut(s)	97, 119, 713, 1211
BsnI	GGCC	2 cut(s)	698, 773
Bsp119I	TTCGAA	3 cut(s)	86, 253, 830
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp13I	TCCGGA	1 cut(s)	372
Bsp143I	GATC	5 cut(s)	765, 933, 1014, 1047, 1102
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	648
BspANI	GGCC	2 cut(s)	698, 773
BspCNI	CTCAG	2 cut(s)	633, 932
BspEI	TCCGGA	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	4 cut(s)	385, 437, 885, 925
BspMI	ACCTGC	1 cut(s)	189
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	941
BspT104I	TTCGAA	3 cut(s)	86, 253, 830
BsrDI	GCAATG	1 cut(s)	766
BsrFI	RCCGGY	2 cut(s)	52, 343
BsrI	ACTGG	4 cut(s)	45, 190, 654, 725
BssAI	RCCGGY	2 cut(s)	52, 343
BssECI	CCNNGG	4 cut(s)	163, 244, 537, 570
BssMI	GATC	5 cut(s)	765, 933, 1014, 1047, 1102
BssT1I	CCWWGG	3 cut(s)	244, 537, 570
Bst2UI	CCWGG	2 cut(s)	164, 741
Bst4CI	ACNGT	4 cut(s)	66, 457, 853, 1068
Bst6I	CTCTTC	1 cut(s)	273
BstBI	TTCGAA	3 cut(s)	86, 253, 830
BstC8I	GCNNGC	2 cut(s)	160, 345
BstDEI	CTNAG	3 cut(s)	620, 919, 969
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	1066
BstKTI	GATC	5 cut(s)	768, 936, 1017, 1050, 1105
BstMBI	GATC	5 cut(s)	765, 933, 1014, 1047, 1102
BstNI	CCWGG	2 cut(s)	164, 741
BstSCI	CCNGG	3 cut(s)	162, 739, 885
BstV2I	GAAGAC	3 cut(s)	243, 467, 678
BstX2I	RGATCY	1 cut(s)	1102
BstYI	RGATCY	1 cut(s)	1102
BsuRI	GGCC	2 cut(s)	698, 773
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	1066
BtsIMutI	CAGTG	5 cut(s)	62, 462, 718, 858, 1209
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	160, 345
CciI	TCATGA	1 cut(s)	936
Cfr10I	RCCGGY	2 cut(s)	52, 343
Cfr13I	GGNCC	3 cut(s)	187, 541, 883
Csp6I	GTAC	3 cut(s)	50, 367, 624
CspAI	ACCGGT	1 cut(s)	52
CviQI	GTAC	3 cut(s)	50, 367, 624
DdeI	CTNAG	3 cut(s)	620, 919, 969
DpnI	GATC	5 cut(s)	767, 935, 1016, 1049, 1104
DpnII	GATC	5 cut(s)	765, 933, 1014, 1047, 1102
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	244, 537, 570
Eco147I	AGGCCT	1 cut(s)	698
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	3 cut(s)	187, 541, 883
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	162, 739
EcoT14I	CCWWGG	3 cut(s)	244, 537, 570
EcoT38I	GRGCYC	1 cut(s)	386
ErhI	CCWWGG	3 cut(s)	244, 537, 570
FalI	AAGNNNNNCTT	6 cut(s)	452, 484, 670, 702, 824, 856
FaqI	GGGAC	1 cut(s)	869
FauNDI	CATATG	1 cut(s)	1075
FbaI	TGATCA	3 cut(s)	765, 1014, 1047
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	1 cut(s)	1073
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	4 cut(s)	111, 159, 602, 816
GluI	GCNGC	1 cut(s)	648
HaeIII	GGCC	2 cut(s)	698, 773
HapII	CCGG	4 cut(s)	53, 344, 373, 887
HinfI	GANTC	7 cut(s)	72, 308, 508, 908, 959, 1130, 1157
HpaII	CCGG	4 cut(s)	53, 344, 373, 887
HphI	GGTGA	5 cut(s)	67, 179, 607, 681, 1024
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188I	TCNGA	6 cut(s)	7, 47, 364, 421, 1025, 1135
Hpy188III	TCNNGA	5 cut(s)	16, 373, 433, 607, 937
Hpy8I	GTNNAC	1 cut(s)	872
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	3 cut(s)	322, 450, 784
HpyCH4III	ACNGT	4 cut(s)	66, 457, 853, 1068
HpyCH4IV	ACGT	1 cut(s)	1054
HpyCH4V	TGCA	9 cut(s)	119, 295, 405, 676, 713, 728, 759, 809, 1209
HpyF3I	CTNAG	3 cut(s)	620, 919, 969
HpySE526I	ACGT	1 cut(s)	1054
Kpn2I	TCCGGA	1 cut(s)	372
KroI	GCCGGC	1 cut(s)	343
KroNI	GCCGGC	1 cut(s)	345
Ksp22I	TGATCA	3 cut(s)	765, 1014, 1047
Kzo9I	GATC	5 cut(s)	765, 933, 1014, 1047, 1102
LmnI	GCTCC	3 cut(s)	174, 389, 929
MaeI	CTAG	4 cut(s)	111, 159, 602, 816
MaeII	ACGT	1 cut(s)	1054
MaeIII	GTNAC	3 cut(s)	60, 262, 524
MalI	GATC	5 cut(s)	767, 935, 1016, 1049, 1104
MboI	GATC	5 cut(s)	765, 933, 1014, 1047, 1102
MboII	GAAGA	7 cut(s)	248, 290, 472, 587, 678, 744, 1097
MflI	RGATCY	1 cut(s)	1102
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	2 cut(s)	353, 804
MlyI	GAGTC	1 cut(s)	1151
MmeI	TCCRAC	2 cut(s)	342, 399
MnlI	CCTC	9 cut(s)	146, 226, 475, 554, 609, 629, 784, 846, 889
MroI	TCCGGA	1 cut(s)	372
MroNI	GCCGGC	1 cut(s)	343
MseI	TTAA	2 cut(s)	501, 1222
MslI	CAYNNNNRTG	2 cut(s)	300, 1113
MspI	CCGG	4 cut(s)	53, 344, 373, 887
MspR9I	CCNGG	3 cut(s)	164, 741, 887
Mva1269I	GAATGC	4 cut(s)	97, 119, 713, 1211
MvaI	CCWGG	2 cut(s)	164, 741
NaeI	GCCGGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	887
NcoI	CCATGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	1075
NdeII	GATC	5 cut(s)	765, 933, 1014, 1047, 1102
NgoMIV	GCCGGC	1 cut(s)	343
NheI	GCTAGC	1 cut(s)	158
NlaIV	GGNNCC	4 cut(s)	385, 437, 885, 925
NmuCI	GTSAC	3 cut(s)	60, 262, 524
NspV	TTCGAA	3 cut(s)	86, 253, 830
PagI	TCATGA	1 cut(s)	936
PceI	AGGCCT	1 cut(s)	698
PctI	GAATGC	4 cut(s)	97, 119, 713, 1211
PdiI	GCCGGC	1 cut(s)	345
PfeI	GAWTC	6 cut(s)	72, 308, 508, 908, 959, 1130
PfoI	TCCNGGA	1 cut(s)	885
PinAI	ACCGGT	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	1151
PpsI	GAGTC	1 cut(s)	1151
PpuMI	RGGWCCY	1 cut(s)	541
PsiI	TTATAA	1 cut(s)	1149
Psp1406I	AACGTT	1 cut(s)	1054
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	162, 739
PspGI	CCWGG	2 cut(s)	162, 739
PspN4I	GGNNCC	4 cut(s)	385, 437, 885, 925
PspPI	GGNCC	3 cut(s)	187, 541, 883
PspPPI	RGGWCCY	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	1102
RsaI	GTAC	3 cut(s)	51, 368, 625
RsaNI	GTAC	3 cut(s)	50, 367, 624
RseI	CAYNNNNRTG	2 cut(s)	300, 1113
SaqAI	TTAA	2 cut(s)	501, 1222
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	5 cut(s)	765, 933, 1014, 1047, 1102
Sau96I	GGNCC	3 cut(s)	187, 541, 883
ScaI	AGTACT	2 cut(s)	368, 625
SchI	GAGTC	1 cut(s)	1151
ScrFI	CCNGG	3 cut(s)	164, 741, 887
SduI	GDGCHC	1 cut(s)	386
SfuI	TTCGAA	3 cut(s)	86, 253, 830
SinI	GGWCC	3 cut(s)	187, 541, 883
SmiMI	CAYNNNNRTG	2 cut(s)	300, 1113
SmlI	CTYRAG	2 cut(s)	338, 545
SmoI	CTYRAG	2 cut(s)	338, 545
Sse9I	AATT	2 cut(s)	353, 804
SseBI	AGGCCT	1 cut(s)	698
SsiI	CCGC	1 cut(s)	648
SspMI	CTAG	4 cut(s)	111, 159, 602, 816
StuI	AGGCCT	1 cut(s)	698
StyD4I	CCNGG	3 cut(s)	162, 739, 885
StyI	CCWWGG	3 cut(s)	244, 537, 570
TaaI	ACNGT	4 cut(s)	66, 457, 853, 1068
TaiI	ACGT	1 cut(s)	1057
TaqI	TCGA	7 cut(s)	86, 205, 253, 606, 777, 830, 978
TasI	AATT	2 cut(s)	353, 804
TatI	WGTACW	2 cut(s)	366, 623
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	6 cut(s)	72, 308, 508, 908, 959, 1130
Tru1I	TTAA	2 cut(s)	501, 1222
Tru9I	TTAA	2 cut(s)	501, 1222
TscAI	CASTG	5 cut(s)	69, 462, 725, 858, 1216
TseFI	GTSAC	3 cut(s)	60, 262, 524
Tsp45I	GTSAC	3 cut(s)	60, 262, 524
TspGWI	ACGGA	2 cut(s)	916, 1047
TspRI	CASTG	5 cut(s)	69, 462, 725, 858, 1216
VpaK11BI	GGWCC	3 cut(s)	187, 541, 883
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	4 cut(s)	111, 159, 602, 816
ZrmI	AGTACT	2 cut(s)	368, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.