Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Forward (+)

58704841 .. 58707073

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG435900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCTGATTATCTCCCAAAGGAATGTCTGACGGAGATACTGGTTAGAGTACCAGTGAAGTCACTGTTGAGATTTAGGTGCGTTTCAAAAACATGGGATTCTCTCATTTCTAGCCCTGCATTCATCACCACCCACCTCAATCATGCTCATCATAAAGCTAGCCATGGTGAAAGAAGCAACCACCAGTTTATTCTGTTTCGACACTACTGTTCCTGTGATTCTATTAGTGAAGACGACCATGGTTATCGAACTTATATCACTAGCAAAGAGGACGAGTGCTTTGCTTTGCACAAGGATGATGAATCCTTCCCCCACAATCCCACCTTGAAACTCAAACACCCACATAACAGCTCTGGGAAGTACTTCCCGATTGTGGGCTCGATGAATGGGATAGTCTGCATGATCGGCTGGAATGAGTGTGTTTTTTGGAACCCTTCCTTGAACAAAACAATGAAGACCTCCTTTGTAACAGGATTTCCATCATTCTTACCTGTTAAGCATCTTCTTGGTCTTGGCTGTGACCCCATTACCAATGACCTCAAACTGGTAAGACTTTTCTATTATAAGGAACATGTCGTTCCACCTCTTGTTGAGATTTTCACCCTCAGTACTAACTCATGGCGAGAAGTTTCCGTCCCCGGTCCTATGAATATTGTGGTGCAAAGTAAATCTTCACCACAGGCCTTCGTGTCAGGTGCATTCCACTGGGTTGCTTATACCCCACCAGAACAGGGTTCTATATGCAATGTGATCGTGGCATTCGATATGGCTAATGAGGTTTTTTATGAAATTGCACTTCCCAGCTGTTTAGCTTCAAAGCGTCACTTGAATATGACAGTGGTTTTGTTGAACGGTTCACTTTCTCTGGTCCCAGATAATGAGGTCTATGGAGACTCATATTACTCGAGCTCTGTGTGGATCATGAAAGAGTATGGCGTGGCAGAATCTTGGACTAAGCTATTCGATATCGATATTGGTGAACAAGAAGTGAGAAGGGTGATCACTTTCAGAAACAATGGGGAACTTCTATTGACTAGCAATCTGGGTGAACTGTTATCATATGAACCCTATACTCAAGAGACCACAGATCTTCACTTCGGCAGGTATATAAGCAATTCTGATGCACCAACTTATAAGACCGGCTCATATTTTATAGATACTCACATGGAGAGCCTTGTTTTGTTGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

397

Amino Acids

45.11

Weight (kDa)

5.89

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 40	4.3e-06	F-box-like
F-box	PF00646	5 - 41	1.4e-08	F-box domain
FBA_3	PF08268	98 - 343	1.2e-15	F-box associated beta propeller domain
FBA_1	PF07734	120 - 341	2.2e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	564, 1134
Acc36I	ACCTGC	1 cut(s)	1092
AclWI	GGATC	1 cut(s)	926
AfaI	GTAC	3 cut(s)	51, 362, 610
AfiI	CCNNNNNNNGG	4 cut(s)	373, 374, 544, 731
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	7 cut(s)	87, 328, 442, 816, 829, 850, 1186
AluBI	AGCT	6 cut(s)	158, 351, 804, 812, 909, 958
AluI	AGCT	6 cut(s)	158, 351, 804, 812, 909, 958
Alw21I	GWGCWC	1 cut(s)	911
Alw26I	GTCTC	2 cut(s)	885, 1073
AlwI	GGATC	1 cut(s)	926
Ama87I	CYCGRG	1 cut(s)	904
AoxI	GGCC	1 cut(s)	681
ArsI	GACNNNNNNTTYG	4 cut(s)	263, 295, 826, 858
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	641, 868
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	7 cut(s)	118, 179, 592, 666, 989, 1009, 1058
AsuNHI	GCTAGC	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	904
AvaII	GGWCC	2 cut(s)	641, 868
BanII	GRGCYC	2 cut(s)	380, 911
BbsI	GAAGAC	2 cut(s)	237, 461
Bbv12I	GWGCWC	1 cut(s)	911
BccI	CCATC	1 cut(s)	487
BcgI	CGANNNNNNTGC	4 cut(s)	263, 297, 733, 767
BclI	TGATCA	1 cut(s)	999
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	885, 1073
BfaI	CTAG	4 cut(s)	111, 159, 261, 1035
BfuAI	ACCTGC	1 cut(s)	1092
BglII	AGATCT	1 cut(s)	1087
BmcAI	AGTACT	2 cut(s)	362, 610
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	2 cut(s)	641, 868
BmeT110I	CYCGRG	1 cut(s)	904
BmgT120I	GGNCC	2 cut(s)	641, 868
BmiI	GGNNCC	2 cut(s)	431, 870
BmrFI	CCNGG	1 cut(s)	639
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	2 cut(s)	508, 1111
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	715
BpiI	GAAGAC	2 cut(s)	237, 461
BpuEI	CTTGAG	1 cut(s)	1059
BpuMI	CCSGG	1 cut(s)	639
Bsa29I	ATCGAT	1 cut(s)	969
BsaBI	GATNNNNATC	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	1073
BsaJI	CCNNGG	3 cut(s)	163, 238, 637
Bsc4I	CCNNNNNNNGG	4 cut(s)	373, 374, 544, 731
Bse118I	RCCGGY	1 cut(s)	1139
Bse1I	ACTGG	5 cut(s)	45, 53, 184, 549, 710
Bse3DI	GCAATG	1 cut(s)	751
Bse8I	GATNNNNATC	1 cut(s)	478
BseCI	ATCGAT	1 cut(s)	969
BseDI	CCNNGG	3 cut(s)	163, 238, 637
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	4 cut(s)	373, 374, 544, 731
BseMI	GCAATG	1 cut(s)	751
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	5 cut(s)	45, 53, 184, 549, 710
BseYI	CCCAGC	1 cut(s)	800
BshFI	GGCC	1 cut(s)	683
BshVI	ATCGAT	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	911
BsiHKCI	CYCGRG	1 cut(s)	904
BsiSI	CCGG	2 cut(s)	639, 1140
BslFI	GGGAC	2 cut(s)	620, 854
BslI	CCNNNNNNNGG	4 cut(s)	373, 374, 544, 731
BsmAI	GTCTC	2 cut(s)	885, 1073
BsmFI	GGGAC	2 cut(s)	620, 854
BsmI	GAATGC	3 cut(s)	119, 698, 758
BsnI	GGCC	1 cut(s)	683
Bso31I	GGTCTC	1 cut(s)	1073
BsoBI	CYCGRG	1 cut(s)	904
Bsp1286I	GDGCHC	2 cut(s)	380, 911
Bsp143I	GATC	5 cut(s)	402, 750, 918, 999, 1087
Bsp19I	CCATGG	2 cut(s)	163, 238
BspANI	GGCC	1 cut(s)	683
BspCNI	CTCAG	1 cut(s)	618
BspDI	ATCGAT	1 cut(s)	969
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	2 cut(s)	431, 870
BspMI	ACCTGC	1 cut(s)	1092
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	1073
BsrDI	GCAATG	1 cut(s)	751
BsrFI	RCCGGY	1 cut(s)	1139
BsrI	ACTGG	5 cut(s)	45, 53, 184, 549, 710
BssAI	RCCGGY	1 cut(s)	1139
BssECI	CCNNGG	3 cut(s)	163, 238, 637
BssMI	GATC	5 cut(s)	402, 750, 918, 999, 1087
BssT1I	CCWWGG	2 cut(s)	163, 238
Bst4CI	ACNGT	5 cut(s)	66, 209, 838, 854, 1053
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	605, 954
BstDSI	CCRYGG	2 cut(s)	163, 238
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	5 cut(s)	405, 753, 921, 1002, 1090
BstMAI	GTCTC	2 cut(s)	885, 1073
BstMBI	GATC	5 cut(s)	402, 750, 918, 999, 1087
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	637
BstV2I	GAAGAC	2 cut(s)	237, 461
BstX2I	RGATCY	1 cut(s)	1087
BstYI	RGATCY	1 cut(s)	1087
Bsu15I	ATCGAT	1 cut(s)	969
BsuRI	GGCC	1 cut(s)	683
BsuTUI	ATCGAT	1 cut(s)	969
BtgI	CCRYGG	2 cut(s)	163, 238
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	4 cut(s)	60, 62, 703, 843
BveI	ACCTGC	1 cut(s)	1092
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	921
Cfr10I	RCCGGY	1 cut(s)	1139
Cfr13I	GGNCC	2 cut(s)	641, 868
ClaI	ATCGAT	1 cut(s)	969
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	3 cut(s)	50, 361, 609
CviAII	CATG	9 cut(s)	93, 143, 164, 239, 400, 572, 618, 922, 1165
CviQI	GTAC	3 cut(s)	50, 361, 609
DdeI	CTNAG	2 cut(s)	605, 954
DpnI	GATC	5 cut(s)	404, 752, 920, 1001, 1089
DpnII	GATC	5 cut(s)	402, 750, 918, 999, 1087
Ecl136II	GAGCTC	1 cut(s)	909
Eco130I	CCWWGG	2 cut(s)	163, 238
Eco147I	AGGCCT	1 cut(s)	683
Eco24I	GRGCYC	2 cut(s)	380, 911
Eco31I	GGTCTC	1 cut(s)	1073
Eco32I	GATATC	1 cut(s)	967
Eco47I	GGWCC	2 cut(s)	641, 868
Eco53kI	GAGCTC	1 cut(s)	909
Eco88I	CYCGRG	1 cut(s)	904
EcoICRI	GAGCTC	1 cut(s)	909
EcoRV	GATATC	1 cut(s)	967
EcoT14I	CCWWGG	2 cut(s)	163, 238
EcoT38I	GRGCYC	2 cut(s)	380, 911
ErhI	CCWWGG	2 cut(s)	163, 238
FaeI	CATG	9 cut(s)	96, 146, 167, 242, 403, 575, 621, 925, 1168
FalI	AAGNNNNNCTT	6 cut(s)	446, 478, 655, 687, 809, 841
FaqI	GGGAC	2 cut(s)	620, 854
FatI	CATG	9 cut(s)	92, 142, 163, 238, 399, 571, 617, 921, 1164
FauNDI	CATATG	1 cut(s)	1060
FbaI	TGATCA	1 cut(s)	999
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	2 cut(s)	380, 911
FspBI	CTAG	4 cut(s)	111, 159, 261, 1035
GsaI	CCCAGC	1 cut(s)	804
HaeIII	GGCC	1 cut(s)	683
HapII	CCGG	2 cut(s)	639, 1140
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	9 cut(s)	96, 146, 167, 242, 403, 575, 621, 925, 1168
HinfI	GANTC	5 cut(s)	98, 218, 302, 893, 944
HpaII	CCGG	2 cut(s)	639, 1140
HphI	GGTGA	7 cut(s)	118, 179, 592, 666, 989, 1009, 1058
Hpy166II	GTNNAC	3 cut(s)	857, 980, 1049
Hpy188I	TCNGA	4 cut(s)	7, 30, 1010, 1120
Hpy188III	TCNNGA	3 cut(s)	367, 922, 1076
Hpy8I	GTNNAC	3 cut(s)	857, 980, 1049
HpyAV	CCTTC	4 cut(s)	316, 444, 694, 987
HpyCH4III	ACNGT	5 cut(s)	66, 209, 838, 854, 1053
HpyCH4V	TGCA	8 cut(s)	119, 289, 399, 661, 698, 744, 794, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	2 cut(s)	605, 954
Hsp92II	CATG	9 cut(s)	96, 146, 167, 242, 403, 575, 621, 925, 1168
Ksp22I	TGATCA	1 cut(s)	999
Kzo9I	GATC	5 cut(s)	402, 750, 918, 999, 1087
LweI	GCATC	2 cut(s)	508, 1111
MaeI	CTAG	4 cut(s)	111, 159, 261, 1035
MaeIII	GTNAC	4 cut(s)	60, 466, 518, 821
MalI	GATC	5 cut(s)	404, 752, 920, 1001, 1089
MboI	GATC	5 cut(s)	402, 750, 918, 999, 1087
MboII	GAAGA	5 cut(s)	242, 466, 494, 663, 1082
MflI	RGATCY	1 cut(s)	1087
MhlI	GDGCHC	2 cut(s)	380, 911
MluCI	AATT	2 cut(s)	789, 1114
MlyI	GAGTC	1 cut(s)	887
MnlI	CCTC	8 cut(s)	146, 262, 469, 548, 594, 614, 769, 874
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	804
MspI	CCGG	2 cut(s)	639, 1140
MspR9I	CCNGG	1 cut(s)	639
Mva1269I	GAATGC	3 cut(s)	119, 698, 758
MwoI	GCNNNNNNNGC	1 cut(s)	405
NciI	CCSGG	1 cut(s)	639
NcoI	CCATGG	2 cut(s)	163, 238
NdeI	CATATG	1 cut(s)	1060
NdeII	GATC	5 cut(s)	402, 750, 918, 999, 1087
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	9 cut(s)	96, 146, 167, 242, 403, 575, 621, 925, 1168
NlaIV	GGNNCC	2 cut(s)	431, 870
NmuCI	GTSAC	3 cut(s)	60, 518, 821
NspI	RCATGY	1 cut(s)	575
PaeR7I	CTCGAG	1 cut(s)	904
PagI	TCATGA	1 cut(s)	921
PceI	AGGCCT	1 cut(s)	683
PciI	ACATGT	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PctI	GAATGC	3 cut(s)	119, 698, 758
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	4 cut(s)	98, 218, 302, 944
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PscI	ACATGT	1 cut(s)	571
PsiI	TTATAA	2 cut(s)	564, 1134
Psp124BI	GAGCTC	1 cut(s)	911
PspFI	CCCAGC	1 cut(s)	800
PspN4I	GGNNCC	2 cut(s)	431, 870
PspPI	GGNCC	2 cut(s)	641, 868
PspXI	VCTCGAGB	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	1087
PvuII	CAGCTG	1 cut(s)	804
RsaI	GTAC	3 cut(s)	51, 362, 610
RsaNI	GTAC	3 cut(s)	50, 361, 609
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	911
SaqAI	TTAA	1 cut(s)	495
Sau3AI	GATC	5 cut(s)	402, 750, 918, 999, 1087
Sau96I	GGNCC	2 cut(s)	641, 868
ScaI	AGTACT	2 cut(s)	362, 610
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	2 cut(s)	380, 911
SfaNI	GCATC	2 cut(s)	508, 1111
Sfr274I	CTCGAG	1 cut(s)	904
SinI	GGWCC	2 cut(s)	641, 868
SlaI	CTCGAG	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	2 cut(s)	904, 1074
SmoI	CTYRAG	2 cut(s)	904, 1074
Sse9I	AATT	2 cut(s)	789, 1114
SseBI	AGGCCT	1 cut(s)	683
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	4 cut(s)	111, 159, 261, 1035
SstI	GAGCTC	1 cut(s)	911
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	2 cut(s)	163, 238
TaaI	ACNGT	5 cut(s)	66, 209, 838, 854, 1053
TaqI	TCGA	7 cut(s)	199, 247, 380, 762, 905, 963, 969
TasI	AATT	2 cut(s)	789, 1114
TatI	WGTACW	2 cut(s)	360, 608
TfiI	GAWTC	4 cut(s)	98, 218, 302, 944
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	4 cut(s)	60, 69, 710, 843
TseFI	GTSAC	3 cut(s)	60, 518, 821
Tsp45I	GTSAC	3 cut(s)	60, 518, 821
TspDTI	ATGAA	8 cut(s)	112, 315, 398, 467, 662, 801, 938, 1077
TspGWI	ACGGA	2 cut(s)	47, 622
TspRI	CASTG	4 cut(s)	60, 69, 710, 843
VpaK11BI	GGWCC	2 cut(s)	641, 868
XceI	RCATGY	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	4 cut(s)	111, 159, 261, 1035
ZrmI	AGTACT	2 cut(s)	362, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.