Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042688.1

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Forward (+)

3806 .. 4240

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042688.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgtatgtcactgtacagcattcatcatcatcacagtgctttacatctggtgcattccactgggttgcgaatgctccaccagaagaaggcgttttctgtaatctgattctagcatttgatatggctaatgaggttttccatgaacttcctctgcccagctgtttagcagcaaaatcaaacttgaatatgactcttgcggtgttgaacggtttactttctctggtccctcagaataatggtccagtcgatgacgagtcttactcagactcagtgtggatcatgaaagaatacagcatggcagaatcttggactaagctattcagtattgatattcagggaggagcagtaaggagggtgctatcgttcacaaagaatggtgaagttatattacttaacaattcagacgaactggtctcatatgaatccaatacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

144

Amino Acids

15.86

Weight (kDa)

4.42

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	284
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	184, 205
AluBI	AGCT	2 cut(s)	159, 316
AluI	AGCT	2 cut(s)	159, 316
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	223, 239
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	223, 239
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbvI	GCAGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	223, 239
BmgT120I	GGNCC	2 cut(s)	223, 239
BmiI	GGNNCC	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BsaI	GGTCTC	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	65, 242, 414
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	3 cut(s)	242, 276, 282
BseNI	ACTGG	3 cut(s)	65, 242, 414
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	3 cut(s)	19, 53, 76
Bso31I	GGTCTC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	1 cut(s)	197
BspCNI	CTCAG	3 cut(s)	241, 275, 281
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	65, 242, 414
BssMI	GATC	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	13, 36, 209
BstAUI	TGTACA	1 cut(s)	13
BstDEI	CTNAG	4 cut(s)	228, 262, 268, 312
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	179
BtsIMutI	CAGTG	4 cut(s)	9, 41, 58, 276
CciI	TCATGA	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	223, 239
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	3 cut(s)	140, 280, 295
CviJI	RGCY	3 cut(s)	125, 159, 316
CviKI_1	RGCY	3 cut(s)	125, 159, 316
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	4 cut(s)	228, 262, 268, 312
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	223, 239
FaeI	CATG	3 cut(s)	143, 283, 298
FaiI	YATR	9 cut(s)	6, 122, 141, 188, 281, 296, 386, 418, 420
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	139, 279, 294
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	143, 283, 298
HinfI	GANTC	6 cut(s)	106, 190, 254, 266, 302, 422
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	212, 366
Hpy188I	TCNGA	4 cut(s)	105, 231, 265, 403
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	2 cut(s)	212, 366
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	13, 36, 209
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	4 cut(s)	228, 262, 268, 312
Hsp92II	CATG	3 cut(s)	143, 283, 298
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	79, 341
LpnPI	CCDG	8 cut(s)	33, 46, 93, 169, 206, 255, 320, 395
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	95
MluCI	AATT	1 cut(s)	397
MlyI	GAGTC	3 cut(s)	184, 260, 263
MnlI	CCTC	5 cut(s)	124, 159, 237, 332, 345
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	159
Mva1269I	GAATGC	3 cut(s)	19, 53, 76
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	143, 283, 298
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	7
PagI	TCATGA	1 cut(s)	279
PctI	GAATGC	3 cut(s)	19, 53, 76
PfeI	GAWTC	3 cut(s)	106, 302, 422
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	3 cut(s)	184, 260, 262
PpsI	GAGTC	3 cut(s)	184, 260, 262
PspFI	CCCAGC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	223, 239
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	223, 239
SchI	GAGTC	3 cut(s)	184, 260, 263
SetI	ASST	4 cut(s)	135, 161, 318, 434
SinI	GGWCC	2 cut(s)	223, 239
SmiMI	CAYNNNNRTG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	3 cut(s)	13, 36, 209
TaqI	TCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	397
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	106, 302, 422
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	4 cut(s)	16, 41, 65, 276
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	12, 156, 296, 435
TspRI	CASTG	4 cut(s)	16, 41, 65, 276
VpaK11BI	GGWCC	2 cut(s)	223, 239
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.