Rh2AG328800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006179
Physical Location & Seq
Forward (+)
47291345 .. 47292091
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG328800.1

Sequence Viewer

Length: 747 bp
ATGGAGCTCCCGTCTGCATTTCAATATCCAGATCGTTCTGTCATGCATCATCTTGGATTTGGCTGTGACCGAATCACGAATGACTACAAGCTGGTAAGACTAGTCTATTTTGGAAGAAAAGACCATTATGTGGTTCCACCTGTGGTTGAGATTTTCACTCTTAGCACAAATTCATGGCGACAACTTGCAGCTCCTGGTCCTATGTATGTCACTGTACAGCATTCATCATCATCACAGTCCTTTGCATCTGGTGCATTCCACTGGGTTGCGAATGCTCCACCAGAAGAGGGCGCTTTCTGCAATCTGATTCTAGCATTTGATATGGTTAATGAGGTTTTCCATGAACTTCCTCTGCCCAGCTGTTTAGCGGCAAAATCAAACTTGAATATGACTCTTGCGGTGTTGAACGGATTACTTTCTCTGGTCCCTCGGAATAATGGTCCGGTCGATGACGAGTCATACTCAGACTCAGTGTGGATCATGAAAGAATACGGCGTGGCAGAATCTTGGACTAAGCTATTCAGTATTGATATTCAGGGAGGAGCAATAAGGAGGGTGCTATCGTTCACAAAGAATGGTGAAGTTATATTACTTGACAATTCAGATGAACTAGTCTCATTTGAATCCAATACCCAACAAACTAGGGATCTTGAATACAGTGTAGGCAAGAGATTCTCCAAAAAAGTGCATTCTCTGGATACTTACATGGAGAGCCTTGTTCTGTTGAATGTAGCTGATGCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

248

Amino Acids

27.73

Weight (kDa)

5.21

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 13 - 230 1.4e-17 F-box associated beta propeller domain
FBA_3 PF08268 14 - 201 3.1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 745
AccB7I CCANNNNNTGG 1 cut(s) 130
AciI CCGC 2 cut(s) 368, 398
AclWI GGATC 2 cut(s) 485, 654
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 130, 287
AgsI TTSAA 6 cut(s) 23, 385, 406, 623, 653, 727
AhlI ACTAGT 2 cut(s) 100, 610
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 6 cut(s) 7, 91, 191, 360, 517, 734
AluI AGCT 6 cut(s) 7, 91, 191, 360, 517, 734
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 2 cut(s) 485, 654
AlwNI CAGNNNCTG 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 169
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 3 cut(s) 197, 424, 440
AsuHPI GGTGA 1 cut(s) 590
AvaII GGWCC 3 cut(s) 197, 424, 440
BanII GRGCYC 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 573, 605
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 195
BciVI GTATCC 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 619
BcuI ACTAGT 2 cut(s) 100, 610
BfaI CTAG 4 cut(s) 101, 311, 611, 642
BfoI RGCGCY 1 cut(s) 294
BfuI GTATCC 1 cut(s) 691
BisI GCNGC 2 cut(s) 189, 369
BlsI GCNGC 2 cut(s) 190, 370
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 3 cut(s) 197, 424, 440
BmgT120I GGNCC 3 cut(s) 197, 424, 440
BmiI GGNNCC 2 cut(s) 135, 426
BmrFI CCNGG 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 3 cut(s) 55, 254, 727
BmuI ACTGGG 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BsaJI CCNNGG 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 287
Bse1I ACTGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 428
BseLI CCNNNNNNNGG 2 cut(s) 130, 287
BseMII CTCAG 2 cut(s) 477, 483
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 1 cut(s) 200
BseYI CCCAGC 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 130, 287
BsmAI GTCTC 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 4 cut(s) 220, 254, 277, 688
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 214
Bsp143I GATC 3 cut(s) 31, 477, 646
BspACI CCGC 2 cut(s) 368, 398
BspCNI CTCAG 2 cut(s) 476, 482
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 135, 426
BspPI GGATC 2 cut(s) 485, 654
BsrGI TGTACA 1 cut(s) 214
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 3 cut(s) 31, 477, 646
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 214, 237, 659
Bst6I CTCTTC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 251
BstAUI TGTACA 1 cut(s) 214
BstDEI CTNAG 4 cut(s) 161, 463, 469, 513
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 3 cut(s) 34, 480, 649
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 3 cut(s) 31, 477, 646
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 2 cut(s) 251, 297
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuI GTATCC 1 cut(s) 691
BtsIMutI CAGTG 4 cut(s) 210, 259, 477, 664
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 480
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 197, 424, 440
Csp6I GTAC 1 cut(s) 215
CviAII CATG 5 cut(s) 43, 174, 341, 481, 706
CviJI RGCY 8 cut(s) 7, 63, 91, 191, 360, 517, 714, 734
CviKI_1 RGCY 8 cut(s) 7, 63, 91, 191, 360, 517, 714, 734
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 4 cut(s) 161, 463, 469, 513
DpnI GATC 3 cut(s) 33, 479, 648
DpnII GATC 3 cut(s) 31, 477, 646
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 3 cut(s) 197, 424, 440
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 5 cut(s) 46, 177, 344, 484, 709
FaqI GGGAC 1 cut(s) 410
FatI CATG 5 cut(s) 42, 173, 340, 480, 705
Fnu4HI GCNGC 2 cut(s) 189, 369
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 189, 369
FspBI CTAG 4 cut(s) 101, 311, 611, 642
GlaI GCGC 1 cut(s) 292
GluI GCNGC 2 cut(s) 189, 369
GsaI CCCAGC 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 294
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 293
Hin1II CATG 5 cut(s) 46, 177, 344, 484, 709
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 8 cut(s) 72, 307, 391, 455, 467, 503, 623, 672
HpaII CCGG 1 cut(s) 443
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 4 cut(s) 306, 432, 466, 604
Hpy188III TCNNGA 5 cut(s) 29, 76, 481, 650, 695
Hpy8I GTNNAC 1 cut(s) 567
HpyCH4III ACNGT 3 cut(s) 214, 237, 659
HpyCH4V TGCA 7 cut(s) 17, 46, 188, 245, 254, 300, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 297
HpyF3I CTNAG 4 cut(s) 161, 463, 469, 513
Hsp92II CATG 5 cut(s) 46, 177, 344, 484, 709
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 3 cut(s) 31, 477, 646
LmnI GCTCC 5 cut(s) 4, 12, 196, 280, 542
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 3 cut(s) 55, 254, 727
MaeI CTAG 4 cut(s) 101, 311, 611, 642
MaeIII GTNAC 2 cut(s) 65, 208
MalI GATC 3 cut(s) 33, 479, 648
MboI GATC 3 cut(s) 31, 477, 646
MboII GAAGA 2 cut(s) 126, 296
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 2 cut(s) 169, 598
MlyI GAGTC 3 cut(s) 385, 461, 464
MnlI CCTC 6 cut(s) 280, 325, 360, 438, 533, 546
Mph1103I ATGCAT 1 cut(s) 48
MseI TTAA 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 4 cut(s) 220, 254, 277, 688
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 251, 297
NdeII GATC 3 cut(s) 31, 477, 646
NlaIII CATG 5 cut(s) 46, 177, 344, 484, 709
NlaIV GGNNCC 2 cut(s) 135, 426
NmuCI GTSAC 2 cut(s) 65, 208
NsiI ATGCAT 1 cut(s) 48
PagI TCATGA 1 cut(s) 480
PctI GAATGC 4 cut(s) 220, 254, 277, 688
PfeI GAWTC 5 cut(s) 72, 307, 503, 623, 672
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 190, 370
PleI GAGTC 3 cut(s) 385, 461, 463
PpsI GAGTC 3 cut(s) 385, 461, 463
PsiI TTATAA 1 cut(s) 745
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 135, 426
PspPI GGNCC 3 cut(s) 197, 424, 440
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 360
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 2 cut(s) 189, 369
Sau3AI GATC 3 cut(s) 31, 477, 646
Sau96I GGNCC 3 cut(s) 197, 424, 440
SchI GAGTC 3 cut(s) 385, 461, 464
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 9
SetI ASST 8 cut(s) 9, 93, 142, 193, 336, 362, 519, 736
SfaNI GCATC 3 cut(s) 55, 254, 727
SinI GGWCC 3 cut(s) 197, 424, 440
SpeI ACTAGT 2 cut(s) 100, 610
Sse9I AATT 2 cut(s) 169, 598
SsiI CCGC 2 cut(s) 368, 398
SspMI CTAG 4 cut(s) 101, 311, 611, 642
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 3 cut(s) 214, 237, 659
TaqI TCGA 1 cut(s) 447
TaqII GACCGA 1 cut(s) 84
TasI AATT 2 cut(s) 169, 598
TatI WGTACW 1 cut(s) 214
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 5 cut(s) 72, 307, 503, 623, 672
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 4 cut(s) 217, 266, 477, 664
TseFI GTSAC 2 cut(s) 65, 208
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 2 cut(s) 65, 208
TspDTI ATGAA 5 cut(s) 162, 213, 357, 497, 621
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 4 cut(s) 217, 266, 477, 664
Van91I CCANNNNNTGG 1 cut(s) 130
VpaK11BI GGWCC 3 cut(s) 197, 424, 440
XapI RAATTY 1 cut(s) 169
XspI CTAG 4 cut(s) 101, 311, 611, 642
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.