Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006179

Physical Location & Seq

Genomic Coordinates Reverse (-)

43094513 .. 43097574

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCATCGTCTTGGATTTGGCTATGACCGAACTACAGATGACTATAAGTTTGTGTATCTTGCAAGGGGTTACTATTCAGAGCTTGCACCTGAGTCTGAGATCTACACGCTTAACAATAGCTCAAAGCGAAAATCTGCTCTCCCTTGTCCACTGAACATCGCCGAACATAATTCAACTCCATCAGAGGCCTTTGTGTCTGGTGCACTTCACTGGGTTTTGTGTAGTTATCCACCGAATATGAGTAACTTTCACTATATGATCCTGGCATTTGATATGAATACTGAGCTGGCCGACCAAAATCGCTGTATTCTGTGGAACCCTTCGGTGAACAGAGTCATGGAGCTCCTGTTTGCATTTCAATATCCAGATCGTTCTGTCATGCATCGTCTTGGATTTGGCTGTGACCGAATTACTAATGACTACAAGCTGGTAAGACTAGTCTATTTTGGAAGAAAAGACCATTATGTGGTTCCACCTGTGGTTGAGATTTTCACTCTTAGCACAAATTCCTGGCGACAGCTTGCAGCTCCTGGTCCTATGTATATCACTGTACAACATTCATCGTCATCACAGGCCTTTGCATCTGGTGCATTCCATTCCACTGGATTGCAAATGCTCCACCAGAAGAGGGCACTTTCTGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

215

Amino Acids

24.58

Weight (kDa)

8.32

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	3 - 95	8.6e-06	F-box associated beta propeller domain
FBA_1	PF07734	98 - 183	1.7e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59675
fragaria_vesca	FvH4_5g33960 FvH4_6g26740
malus_domestica	MD12G1183100.v1.1
pyrus_communis	pycom17g24140
rosa_chinensis	RchiOBHm_Chr7g0233331
rosa_laevigata	RLG00000001277 RLG00000001278
rosa_multiflora	Rmu_sc0003865.1_g000004 Rmu_sc0014193.1_g000002 Rmu_sc0027205.1_g000001 Rmu_sc0030609.1_g000001 Rmu_sc0042688.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115710 Rroxscaffold_2G00116160 Rroxscaffold_3G00227390
rosa_rugosa	Rorug02G0277800 Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh2AG328700 Rh2AG328800 Rh2CG315700 Rh7AG435900 Rh7BG408600 Rh7DG425000
rosa_wichuraiana	Rw2G026650 Rw7G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	466
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	505
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	466, 628
AgsI	TTSAA	2 cut(s)	174, 359
AhlI	ACTAGT	1 cut(s)	436
AjnI	CCWGG	3 cut(s)	261, 509, 529
AluBI	AGCT	7 cut(s)	82, 120, 286, 343, 427, 520, 527
AluI	AGCT	7 cut(s)	82, 120, 286, 343, 427, 520, 527
Alw21I	GWGCWC	2 cut(s)	205, 345
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	3 cut(s)	186, 288, 573
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	505
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	2 cut(s)	205, 634
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	205, 345
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	3 cut(s)	263, 511, 531
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	3 cut(s)	263, 511, 531
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	2 cut(s)	317, 471
BmrFI	CCNGG	3 cut(s)	263, 511, 531
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	13, 391, 590
BmuI	ACTGGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 628
Bse1I	ACTGG	2 cut(s)	215, 607
BseBI	CCWGG	3 cut(s)	263, 511, 531
BseLI	CCNNNNNNNGG	2 cut(s)	466, 628
BseMII	CTCAG	3 cut(s)	81, 87, 273
BseNI	ACTGG	2 cut(s)	215, 607
BseSI	GKGCMC	2 cut(s)	205, 634
BseXI	GCAGC	1 cut(s)	536
BshFI	GGCC	3 cut(s)	188, 290, 575
BsiHKAI	GWGCWC	2 cut(s)	205, 345
BslI	CCNNNNNNNGG	2 cut(s)	466, 628
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	3 cut(s)	188, 290, 575
Bsp1286I	GDGCHC	3 cut(s)	205, 345, 634
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	99, 258, 367
BspANI	GGCC	3 cut(s)	188, 290, 575
BspCNI	CTCAG	3 cut(s)	82, 88, 274
BspLI	GGNNCC	2 cut(s)	317, 471
BspPI	GGATC	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	215, 607
BssMI	GATC	3 cut(s)	99, 258, 367
Bst2UI	CCWGG	3 cut(s)	263, 511, 531
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	1 cut(s)	620
BstAPI	GCANNNNNTGC	2 cut(s)	587, 638
BstAUI	TGTACA	1 cut(s)	550
BstC8I	GCNNGC	3 cut(s)	84, 288, 522
BstDEI	CTNAG	4 cut(s)	90, 96, 282, 497
BstKTI	GATC	3 cut(s)	102, 261, 370
BstMBI	GATC	3 cut(s)	99, 258, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	587, 638
BstNI	CCWGG	3 cut(s)	263, 511, 531
BstSCI	CCNGG	3 cut(s)	261, 509, 529
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	2 cut(s)	205, 634
BstV1I	GCAGC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	188, 290, 575
BtgZI	GCGATG	1 cut(s)	142
BtsIMutI	CAGTG	4 cut(s)	149, 208, 546, 600
Cac8I	GCNNGC	3 cut(s)	84, 288, 522
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	2 cut(s)	337, 379
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	4 cut(s)	90, 96, 282, 497
DpnI	GATC	3 cut(s)	101, 260, 369
DpnII	GATC	3 cut(s)	99, 258, 367
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
Ecl136II	GAGCTC	1 cut(s)	343
Eco147I	AGGCCT	2 cut(s)	188, 575
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	533
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	3 cut(s)	261, 509, 529
EcoT22I	ATGCAT	2 cut(s)	6, 384
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	2 cut(s)	340, 382
FatI	CATG	2 cut(s)	336, 378
Fnu4HI	GCNGC	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	188, 290, 575
Hin1II	CATG	2 cut(s)	340, 382
HinfI	GANTC	2 cut(s)	92, 333
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	3 cut(s)	149, 203, 328
Hpy188I	TCNGA	4 cut(s)	79, 97, 184, 647
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	3 cut(s)	149, 203, 328
HpyAV	CCTTC	1 cut(s)	330
HpyCH4III	ACNGT	1 cut(s)	550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	587, 638
HpyF3I	CTNAG	4 cut(s)	90, 96, 282, 497
Hsp92II	CATG	2 cut(s)	340, 382
Kzo9I	GATC	3 cut(s)	99, 258, 367
LmnI	GCTCC	4 cut(s)	340, 348, 532, 621
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	3 cut(s)	13, 391, 590
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	3 cut(s)	68, 242, 401
MalI	GATC	3 cut(s)	101, 260, 369
MboI	GATC	3 cut(s)	99, 258, 367
MboII	GAAGA	2 cut(s)	462, 637
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	3 cut(s)	205, 345, 634
MluCI	AATT	3 cut(s)	169, 408, 505
MlyI	GAGTC	2 cut(s)	101, 342
MnlI	CCTC	2 cut(s)	178, 621
Mph1103I	ATGCAT	2 cut(s)	6, 384
MseI	TTAA	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	263, 511, 531
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	3 cut(s)	263, 511, 531
MwoI	GCNNNNNNNGC	2 cut(s)	587, 638
NdeII	GATC	3 cut(s)	99, 258, 367
NlaIII	CATG	2 cut(s)	340, 382
NlaIV	GGNNCC	2 cut(s)	317, 471
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	2 cut(s)	6, 384
PceI	AGGCCT	2 cut(s)	188, 575
PctI	GAATGC	1 cut(s)	590
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	2 cut(s)	100, 341
PpsI	GAGTC	2 cut(s)	100, 341
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	261, 509, 529
PspGI	CCWGG	3 cut(s)	261, 509, 529
PspN4I	GGNNCC	2 cut(s)	317, 471
PspPI	GGNCC	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	3 cut(s)	99, 258, 367
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	2 cut(s)	101, 342
ScrFI	CCNGG	3 cut(s)	263, 511, 531
SduI	GDGCHC	3 cut(s)	205, 345, 634
SetI	ASST	9 cut(s)	84, 91, 122, 288, 345, 429, 478, 522, 529
SfaNI	GCATC	3 cut(s)	13, 391, 590
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	533
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	3 cut(s)	169, 408, 505
SseBI	AGGCCT	2 cut(s)	188, 575
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	2 cut(s)	188, 575
StyD4I	CCNGG	3 cut(s)	261, 509, 529
TaaI	ACNGT	1 cut(s)	550
TaqII	GACCGA	2 cut(s)	42, 420
TasI	AATT	3 cut(s)	169, 408, 505
TatI	WGTACW	1 cut(s)	550
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	4 cut(s)	156, 215, 553, 607
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	290, 549
TspRI	CASTG	4 cut(s)	156, 215, 553, 607
Van91I	CCANNNNNTGG	1 cut(s)	466
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	1 cut(s)	505
XspI	CTAG	1 cut(s)	437
Zsp2I	ATGCAT	2 cut(s)	6, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.