Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009307

Physical Location & Seq

Genomic Coordinates Forward (+)

59906707 .. 59907372

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG424500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCGGCCCAGGACCCTAAACGACGTCGTCGGCCAGGACCACCTCCTGGCCCCAAACTCCCTCCTCCGCTCCGCTATCAAATGCGAGCGTCTCCCTTCTCTCGTCTTCTGGGGCCCACCCGGCACCGGCAAGACCTCCATCGCCAAAGCCATCATCAACTCCGCCTCCTCCTCCGCCGCCCGGCCCTACCGGTTCGTCTCGCTCTCCGCCGTCACCGCCGGCGTCAAAGACGTCAGGGAAGCCATCGACGAGGCCCGGAAGAGGAAGAAGCTGAACGGCCAGAGAACCGTGCTGTTCGTCGACGAGGTTCACAGGTTCAACAAATCGCAGCAGGGCTCTTTCTTGCCGGTGATCGAAGACGGCAGCATAGTCTTTATGGGCGCCACCACTGAGAACCCTTCGTTCCATTTGATCACACCGCTCTTGTCTAGGTCTCGAGTTCTTGATCTTCGACCCTTGAGCCCACAATATATAGAGATTCTTCTCCGGCGAGCGGCGGAAAACTCTGAAATCGGATTGGCTTGGAGTGTGGGGATGCAAGTAGGTGAAGATGAGGAAGGCATTCGTTTTATCTCTGCCAATTGCGACGGCACTCAATGCATTGGAAATCTCAGCTACAACAGCAGCTGTCCCGTCACTCCCGGGCCTCGACGCCGGATTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

221

Amino Acids

24.26

Weight (kDa)

9.54

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuvB_N	PF05496	1 - 124	4.9e-10	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	35 - 146	4.9e-17	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24290
fragaria_vesca	FvH4_5g33930 FvH4_5g33930
malus_domestica	MD03G1299000.v1.1
pyrus_communis	pycom03g23710
rosa_chinensis	RchiOBHm_Chr7g0233321
rosa_laevigata	RLG00000001279
rosa_multiflora	Rmu_sc0000863.1_g000006 Rmu_sc0000863.1_g000007 Rmu_sc0000863.1_g000049 Rmu_sc0003865.1_g000005 Rmu_sc0010461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227410
rosa_rugosa	Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh7AG435800 Rh7BG408100 Rh7BG408500 Rh7CG455000 Rh7DG424500 Rh7DG424900
rosa_wichuraiana	Rw7G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	27, 234
AccB1I	GGYRCC	2 cut(s)	122, 380
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccBSI	CCGCTC	3 cut(s)	69, 421, 494
AccI	GTMKAC	1 cut(s)	300
AcoI	YGGCCR	2 cut(s)	31, 277
AcyI	GRCGYC	5 cut(s)	24, 222, 231, 381, 652
AfiI	CCNNNNNNNGG	5 cut(s)	46, 125, 180, 261, 493
AgeI	ACCGGT	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	3 cut(s)	8, 33, 45
AluBI	AGCT	3 cut(s)	271, 615, 627
AluI	AGCT	3 cut(s)	271, 615, 627
Alw26I	GTCTC	3 cut(s)	95, 202, 438
AlwNI	CAGNNNCTG	1 cut(s)	627
Ama87I	CYCGRG	2 cut(s)	435, 641
AoxI	GGCC	8 cut(s)	5, 31, 48, 112, 182, 252, 277, 644
ApaI	GGGCCC	1 cut(s)	116
ApeKI	GCWGC	3 cut(s)	328, 363, 624
AsiGI	ACCGGT	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	9 cut(s)	6, 12, 37, 49, 112, 113, 183, 253, 644
AsuC2I	CCSGG	5 cut(s)	120, 181, 256, 642, 643
AsuHPI	GGTGA	3 cut(s)	205, 361, 557
AvaI	CYCGRG	2 cut(s)	435, 641
AvaII	GGWCC	2 cut(s)	12, 37
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	2 cut(s)	122, 380
BanII	GRGCYC	3 cut(s)	116, 338, 464
BbsI	GAAGAC	2 cut(s)	97, 363
BbvI	GCAGC	3 cut(s)	340, 375, 636
BccI	CCATC	3 cut(s)	146, 158, 251
BceAI	ACGGC	4 cut(s)	194, 292, 376, 604
BciT130I	CCWGG	3 cut(s)	10, 35, 47
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	5 cut(s)	120, 181, 256, 642, 643
BcoDI	GTCTC	3 cut(s)	95, 202, 438
BfaI	CTAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	384
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	6 cut(s)	5, 177, 329, 364, 495, 625
BlsI	GCNGC	6 cut(s)	6, 178, 330, 365, 496, 626
Bme1390I	CCNGG	8 cut(s)	10, 35, 47, 120, 181, 256, 642, 643
Bme18I	GGWCC	2 cut(s)	12, 37
BmeT110I	CYCGRG	2 cut(s)	435, 641
BmgT120I	GGNCC	9 cut(s)	6, 12, 37, 49, 112, 113, 183, 253, 644
BmiI	GGNNCC	6 cut(s)	14, 51, 113, 114, 124, 382
BmrFI	CCNGG	8 cut(s)	10, 35, 47, 120, 181, 256, 642, 643
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	2 cut(s)	97, 363
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	5 cut(s)	120, 181, 256, 642, 643
BsaHI	GRCGYC	5 cut(s)	24, 222, 231, 381, 652
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	8, 641
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 125, 180, 261, 493
Bse118I	RCCGGY	4 cut(s)	125, 189, 218, 346
BseBI	CCWGG	3 cut(s)	10, 35, 47
BseDI	CCNNGG	2 cut(s)	8, 641
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	5 cut(s)	46, 125, 180, 261, 493
BseMII	CTCAG	2 cut(s)	381, 625
BseRI	GAGGAG	3 cut(s)	53, 157, 160
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	340, 375, 636
BshFI	GGCC	8 cut(s)	7, 33, 50, 114, 184, 254, 279, 646
BshNI	GGYRCC	2 cut(s)	122, 380
BshTI	ACCGGT	1 cut(s)	189
BsiHKCI	CYCGRG	2 cut(s)	435, 641
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	5 cut(s)	46, 125, 180, 261, 493
BsmAI	GTCTC	3 cut(s)	95, 202, 438
BsmBI	CGTCTC	2 cut(s)	95, 202
BsmFI	GGGAC	1 cut(s)	615
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	8 cut(s)	7, 33, 50, 114, 184, 254, 279, 646
Bso31I	GGTCTC	1 cut(s)	438
BsoBI	CYCGRG	2 cut(s)	435, 641
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	116, 338, 464
Bsp143I	GATC	3 cut(s)	351, 411, 445
BspANI	GGCC	8 cut(s)	7, 33, 50, 114, 184, 254, 279, 646
BspCNI	CTCAG	2 cut(s)	382, 624
BspLI	GGNNCC	6 cut(s)	14, 51, 113, 114, 124, 382
BspT107I	GGYRCC	2 cut(s)	122, 380
BspTNI	GGTCTC	1 cut(s)	438
BsrBI	CCGCTC	3 cut(s)	69, 421, 494
BsrFI	RCCGGY	4 cut(s)	125, 189, 218, 346
BssAI	RCCGGY	4 cut(s)	125, 189, 218, 346
BssECI	CCNNGG	2 cut(s)	8, 641
BssMI	GATC	3 cut(s)	351, 411, 445
BssNI	GRCGYC	5 cut(s)	24, 222, 231, 381, 652
Bst2UI	CCWGG	3 cut(s)	10, 35, 47
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	5 cut(s)	24, 222, 231, 381, 652
BstAPI	GCANNNNNTGC	1 cut(s)	597
BstC8I	GCNNGC	3 cut(s)	86, 220, 492
BstDEI	CTNAG	2 cut(s)	390, 611
BstF5I	GGATG	1 cut(s)	540
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	3 cut(s)	354, 414, 448
BstMAI	GTCTC	3 cut(s)	95, 202, 438
BstMBI	GATC	3 cut(s)	351, 411, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 215, 597, 621
BstNI	CCWGG	3 cut(s)	10, 35, 47
BstSCI	CCNGG	8 cut(s)	8, 33, 45, 118, 179, 254, 640, 641
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	340, 375, 636
BstV2I	GAAGAC	2 cut(s)	97, 363
BsuRI	GGCC	8 cut(s)	7, 33, 50, 114, 184, 254, 279, 646
BtgZI	GCGATG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	3 cut(s)	86, 220, 492
CaiI	CAGNNNCTG	1 cut(s)	627
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	4 cut(s)	125, 189, 218, 346
Cfr13I	GGNCC	9 cut(s)	6, 12, 37, 49, 112, 113, 183, 253, 644
Cfr9I	CCCGGG	1 cut(s)	641
CseI	GACGC	3 cut(s)	77, 211, 660
CspAI	ACCGGT	1 cut(s)	189
DdeI	CTNAG	2 cut(s)	390, 611
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	3 cut(s)	353, 413, 447
DpnII	GATC	3 cut(s)	351, 411, 445
EaeI	YGGCCR	2 cut(s)	31, 277
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	4 cut(s)	151, 163, 196, 512
Eco24I	GRGCYC	3 cut(s)	116, 338, 464
Eco31I	GGTCTC	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	12, 37
Eco88I	CYCGRG	2 cut(s)	435, 641
EcoO109I	RGGNCCY	2 cut(s)	12, 112
EcoRII	CCWGG	3 cut(s)	8, 33, 45
EcoT22I	ATGCAT	1 cut(s)	602
EcoT38I	GRGCYC	3 cut(s)	116, 338, 464
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
Esp3I	CGTCTC	2 cut(s)	95, 202
FaiI	YATR	4 cut(s)	368, 377, 471, 473
FaqI	GGGAC	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	6 cut(s)	5, 177, 329, 364, 495, 625
FokI	GGATG	1 cut(s)	547
FriOI	GRGCYC	3 cut(s)	116, 338, 464
Fsp4HI	GCNGC	6 cut(s)	5, 177, 329, 364, 495, 625
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	6 cut(s)	5, 177, 329, 364, 495, 625
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	8 cut(s)	7, 33, 50, 114, 184, 254, 279, 646
HgaI	GACGC	3 cut(s)	77, 211, 660
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	5 cut(s)	24, 222, 231, 381, 652
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	478, 658
HphI	GGTGA	3 cut(s)	205, 361, 557
Hpy166II	GTNNAC	2 cut(s)	301, 310
Hpy188I	TCNGA	2 cut(s)	508, 515
Hpy188III	TCNNGA	2 cut(s)	435, 443
Hpy8I	GTNNAC	2 cut(s)	301, 310
Hpy99I	CGWCG	8 cut(s)	26, 29, 32, 251, 302, 305, 590, 654
HpyAV	CCTTC	3 cut(s)	105, 408, 551
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	24, 231
HpyCH4V	TGCA	2 cut(s)	538, 600
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 215, 597, 621
HpyF3I	CTNAG	2 cut(s)	390, 611
HpySE526I	ACGT	2 cut(s)	24, 231
Hsp92I	GRCGYC	5 cut(s)	24, 222, 231, 381, 652
HspAI	GCGC	1 cut(s)	381
KasI	GGCGCC	1 cut(s)	380
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	351, 411, 445
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	340, 375, 636
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	24, 231
MaeIII	GTNAC	2 cut(s)	211, 634
MalI	GATC	3 cut(s)	353, 413, 447
MbiI	CCGCTC	3 cut(s)	69, 421, 494
MboI	GATC	3 cut(s)	351, 411, 445
MboII	GAAGA	7 cut(s)	97, 271, 277, 368, 440, 473, 560
MfeI	CAATTG	1 cut(s)	580
MhlI	GDGCHC	3 cut(s)	116, 338, 464
MluCI	AATT	1 cut(s)	580
Mly113I	GGCGCC	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	602
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	627
MspR9I	CCNGG	8 cut(s)	10, 35, 47, 120, 181, 256, 642, 643
MunI	CAATTG	1 cut(s)	580
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	3 cut(s)	10, 35, 47
MwoI	GCNNNNNNNGC	4 cut(s)	120, 215, 597, 621
NaeI	GCCGGC	1 cut(s)	220
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	5 cut(s)	120, 181, 256, 642, 643
NdeII	GATC	3 cut(s)	351, 411, 445
NgoMIV	GCCGGC	1 cut(s)	218
NlaIV	GGNNCC	6 cut(s)	14, 51, 113, 114, 124, 382
NmuCI	GTSAC	2 cut(s)	211, 634
NsiI	ATGCAT	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	435
PctI	GAATGC	1 cut(s)	561
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	478, 658
PflFI	GACNNNGTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	46
PinAI	ACCGGT	1 cut(s)	189
PkrI	GCNGC	6 cut(s)	6, 178, 330, 365, 496, 626
PluTI	GGCGCC	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	3 cut(s)	8, 33, 45
PspGI	CCWGG	3 cut(s)	8, 33, 45
PspN4I	GGNNCC	6 cut(s)	14, 51, 113, 114, 124, 382
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	9 cut(s)	6, 12, 37, 49, 112, 113, 183, 253, 644
PspPPI	RGGWCCY	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	627
PsyI	GACNNNGTC	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	627
SalI	GTCGAC	1 cut(s)	299
SatI	GCNGC	6 cut(s)	5, 177, 329, 364, 495, 625
Sau3AI	GATC	3 cut(s)	351, 411, 445
Sau96I	GGNCC	9 cut(s)	6, 12, 37, 49, 112, 113, 183, 253, 644
ScrFI	CCNGG	8 cut(s)	10, 35, 47, 120, 181, 256, 642, 643
SduI	GDGCHC	3 cut(s)	116, 338, 464
SfaNI	GCATC	1 cut(s)	525
SfoI	GGCGCC	1 cut(s)	382
Sfr274I	CTCGAG	1 cut(s)	435
SgrAI	CRCCGGYG	1 cut(s)	218
SgrDI	CGTCGACG	1 cut(s)	299
SinI	GGWCC	2 cut(s)	12, 37
SlaI	CTCGAG	1 cut(s)	435
SmaI	CCCGGG	1 cut(s)	643
SmlI	CTYRAG	2 cut(s)	435, 457
SmoI	CTYRAG	2 cut(s)	435, 457
Sse9I	AATT	1 cut(s)	580
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	8 cut(s)	8, 33, 45, 118, 179, 254, 640, 641
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	27, 234
TaqI	TCGA	6 cut(s)	246, 300, 354, 436, 451, 649
TasI	AATT	1 cut(s)	580
TauI	GCSGC	3 cut(s)	7, 179, 497
TfiI	GAWTC	2 cut(s)	478, 658
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	211, 634
TseI	GCWGC	3 cut(s)	328, 363, 624
Tsp45I	GTSAC	2 cut(s)	211, 634
TspMI	CCCGGG	1 cut(s)	641
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	12, 37
XhoI	CTCGAG	1 cut(s)	435
XmaI	CCCGGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	1 cut(s)	429
ZraI	GACGTC	2 cut(s)	25, 232
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.