Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003865.1

Orthogroup ID

OG0009307

Physical Location & Seq

Genomic Coordinates Reverse (-)

24080 .. 24709

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003865.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

acaacagcagctgcccgagcctcgacgccggattcagtagctggtgttaccgtggaggatgccaaggaagcactgcaatgcaagcatgtggcttcggacaaagcaggggaagagcactacaacctcatcagtgcgcttcacaagtctatgagaggaagtgatgccaatgctgctatttattggctggcaaggatgcttgagggagggcaggagcctctgtacattgcgcgccggctcgtaaggtttgccagcgaagatgtggggctggcggacccattggcacttaatcaagctgtggcttgttaccaagcttgtcactttattggaatgccagagtgcaatgtgattcttgcacagtgtgtggcttacttggctttggctccgaagtcgattgctgtttataaagcaatgaatagtgcagcagaagtggtgaggagttcggttggacagaatgagggggtgcctcttcatctcaggaatgcaccgactaagctgatgaaggattttgggtatgggaaaggatatatatacactcctgacaatccctctgcagaacagagatttctactgccatcacttgaaggttacaagtttctggattggccaatcagtaataacactgatggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

209

Amino Acids

22.59

Weight (kDa)

5.94

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24290
fragaria_vesca	FvH4_5g33930 FvH4_5g33930
malus_domestica	MD03G1299000.v1.1
pyrus_communis	pycom03g23710
rosa_chinensis	RchiOBHm_Chr7g0233321
rosa_laevigata	RLG00000001279
rosa_multiflora	Rmu_sc0000863.1_g000006 Rmu_sc0000863.1_g000007 Rmu_sc0000863.1_g000049 Rmu_sc0003865.1_g000005 Rmu_sc0010461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227410
rosa_rugosa	Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh7AG435800 Rh7BG408100 Rh7BG408500 Rh7CG455000 Rh7DG424500 Rh7DG424900
rosa_wichuraiana	Rw7G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	1 cut(s)	229
AciI	CCGC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	581
AluBI	AGCT	5 cut(s)	11, 41, 293, 311, 493
AluI	AGCT	5 cut(s)	11, 41, 293, 311, 493
Alw21I	GWGCWC	1 cut(s)	117
AlwNI	CAGNNNCTG	2 cut(s)	11, 41
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	4 cut(s)	8, 11, 170, 419
AspLEI	GCGC	3 cut(s)	136, 229, 231
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	460
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	20, 157, 431
BccI	CCATC	2 cut(s)	580, 617
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	4 cut(s)	9, 12, 171, 420
BlsI	GCNGC	4 cut(s)	10, 13, 172, 421
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	4 cut(s)	213, 273, 381, 462
BmsI	GCATC	3 cut(s)	49, 151, 183
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	51, 63
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bse118I	RCCGGY	1 cut(s)	231
Bse3DI	GCAATG	4 cut(s)	83, 222, 346, 414
BseDI	CCNNGG	2 cut(s)	51, 63
BseGI	GGATG	2 cut(s)	64, 198
BseMI	GCAATG	4 cut(s)	83, 222, 346, 414
BseMII	CTCAG	1 cut(s)	487
BsePI	GCGCGC	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	20, 157, 431
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	604
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	29, 232
BsmI	GAATGC	2 cut(s)	333, 484
BsnI	GGCC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	219
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	4 cut(s)	213, 273, 381, 462
BspMAI	CTGCAG	1 cut(s)	553
BspQI	GCTCTTC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	460
BsrDI	GCAATG	4 cut(s)	83, 222, 346, 414
BsrFI	RCCGGY	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	51, 63
BssHII	GCGCGC	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	52, 357
Bst6I	CTCTTC	2 cut(s)	105, 471
BstACI	GRCGYC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	6 cut(s)	83, 186, 229, 233, 250, 267
BstDEI	CTNAG	2 cut(s)	473, 489
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	64, 198
BstFNI	CGCG	1 cut(s)	229
BstHHI	GCGC	3 cut(s)	136, 229, 231
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 68, 82, 170, 371
BstNSI	RCATGY	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	3 cut(s)	20, 157, 431
BsuRI	GGCC	1 cut(s)	604
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	64, 198
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	4 cut(s)	71, 136, 362, 618
Cac8I	GCNNGC	6 cut(s)	83, 186, 229, 233, 250, 267
CaiI	CAGNNNCTG	2 cut(s)	11, 41
CfoI	GCGC	3 cut(s)	136, 229, 231
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	473, 489
DraIII	CACNNNGTG	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	602
Eam1104I	CTCTTC	2 cut(s)	105, 471
EarI	CTCTTC	2 cut(s)	105, 471
EciI	GGCGGA	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	89
FaiI	YATR	7 cut(s)	87, 149, 402, 513, 525, 527, 529
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	9, 12, 171, 420
FokI	GGATG	2 cut(s)	71, 205
Fsp4HI	GCNGC	4 cut(s)	9, 12, 171, 420
GlaI	GCGC	3 cut(s)	135, 228, 230
GluI	GCNGC	4 cut(s)	9, 12, 171, 420
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	2 cut(s)	29, 232
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	3 cut(s)	136, 229, 231
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	3 cut(s)	134, 227, 229
HinP1I	GCGC	3 cut(s)	134, 227, 229
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	2 cut(s)	32, 346
HpaII	CCGG	2 cut(s)	29, 232
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	97, 384
Hpy188III	TCNNGA	3 cut(s)	475, 536, 596
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	493, 575
HpyCH4III	ACNGT	2 cut(s)	52, 357
HpyCH4V	TGCA	7 cut(s)	76, 81, 339, 353, 419, 482, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 68, 82, 170, 371
HpyF3I	CTNAG	2 cut(s)	473, 489
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	3 cut(s)	134, 227, 229
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	211, 385
Lsp1109I	GCAGC	3 cut(s)	20, 157, 431
LweI	GCATC	3 cut(s)	49, 151, 183
MaeIII	GTNAC	4 cut(s)	46, 302, 314, 584
MboII	GAAGA	3 cut(s)	122, 266, 458
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	604
MluNI	TGGCCA	1 cut(s)	604
MmeI	TCCRAC	1 cut(s)	424
Mox20I	TGGCCA	1 cut(s)	604
MroNI	GCCGGC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	604
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	76
Msp20I	TGGCCA	1 cut(s)	604
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	29, 232
Mva1269I	GAATGC	2 cut(s)	333, 484
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	5 cut(s)	17, 68, 82, 170, 371
NaeI	GCCGGC	1 cut(s)	233
NgoMIV	GCCGGC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	4 cut(s)	213, 273, 381, 462
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	89
PauI	GCGCGC	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	105
PctI	GAATGC	2 cut(s)	333, 484
PdiI	GCCGGC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	32, 346
PkrI	GCNGC	4 cut(s)	10, 13, 172, 421
PsiI	TTATAA	1 cut(s)	402
PspN4I	GGNNCC	4 cut(s)	213, 273, 381, 462
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	553
PstNI	CAGNNNCTG	2 cut(s)	11, 41
PteI	GCGCGC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	9, 12, 171, 420
Sau96I	GGNCC	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	8 cut(s)	13, 43, 126, 245, 295, 313, 495, 586
SfaNI	GCATC	3 cut(s)	49, 151, 183
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	52, 357
TaqI	TCGA	2 cut(s)	23, 389
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	32, 346
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	4 cut(s)	78, 136, 362, 625
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	4 cut(s)	8, 11, 170, 419
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	425, 458, 512
TspRI	CASTG	4 cut(s)	78, 136, 362, 625
VpaK11BI	GGWCC	1 cut(s)	271
XceI	RCATGY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.