Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009307

Physical Location & Seq

Genomic Coordinates Forward (+)

45822676 .. 45824811

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG408100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGGAAATGGAGCAGCTGTTAAGCATGGGCTTCCCCACCGACCTCGCCGCCGAAGCCCTCGCTGCCACCGGCGGCAACTCCGCTCTCAAAGCCACCGATTGGATACTCAACCGCAATTCCTCCACCACATCCACCACTCCCACCGCCACCTCTCAACCCAAACTCGATCGCTTCTTCCTCTCCCAATCCACCCCTTCTTCAAATTCACAATCCCAAGACAAACAAGAACCAGAAGAACAACAGTCCACCCCAACCTCCCAACTCCCCAAGCGCCGCAAACTTCTCGTCCCAGAAACCCCGCCGCCCACCACCTCCGATAAACCCGCAACCGCCGCGGCCCACCACCAGCCCTTGTCGGAGCGCATGCGGCCCAGGACCCTAAACGACGTCGTCGGCCAGGACCACCTCCTCTCCCCAAACTCCCTCCTCCGCTCCGCTATCAAATGCGAGCGTCTCCCTTCCCTCGTCTTCTGGGGCCCACCCGGCACCGGCAAGACCTCCATCGCCAAAGCCATCATCAACTCCGCCTCCTCCTCCGCCGCCCGGCCCTACCGGTTCGTCTCGCTCTCCGCCGTCACCGCCGGCGTCAAAGACGTCAGGGACGCCATCGACGAGGCCCGGAAGAGGAAGAAGCTGAACGGCCAGAGGACCGTTCTCTTCATCGACGAGGTTCACAGGTTCAACAAGTCGCAGCAGGACTCTTTCTTGCCGGTGATCGAAGACGGCAGCATAGTCTTCATGGGCGCCACCACTGAGAACCCGTCGTTCCATTTGATCACGCCGCTCTTGTCTCGGTCTCGAGTTCTTGATCTTCGACCCTTGAGCCCGCAATATATAGAGGTTCTTCTCCGGCGAGCGGCGGAAAACTCCGAAATCGGATTGGCTCGGAGCGTGGGGATGCAAGTAGATGTGGAGGAGGAAGTCATTCGTTTTATCTCCGCCAATTGCGACGGAGATGCTAGAGTGGCACTCAATGCATTGGAAATCTCAGCTACAACAGCAGCTGCCCGAGCCTCGACGCCGGATTCAGTAGCTGGTGTTACCTTGGAGGATGCCAAGGAAGCATTGCAATGCAAGCATGTGGCTTCGGACAAAGCAGGGGATGAGCACTACAACCTCATCAGTGCGCTTCACAAGTCTATGAGAGGAAGTGATGCCAATGCTGCTATTTATTGGCTGGCAAGGATGGTTGAGGGAGGGCAGGAGCCTCTGTACATTGCGCGCCGGCTCGTGAGGTTTGCCAGCGAAGATGTGGGGCTGGCGGACCCGTTGGCACTTAATCAAGCTGTGGCTTGTTACCAAGCTTGTCACTTTATTGGAATGCCAGAGTGCAATGTGATTCTTGCACAGTGTGTGGCTTACTTGGCTTTGGCTCCGAAGTCGGTTGCTGTTTATAAAGCAATGAATAGTGCAGCAGAAGTGGTGAGGAGTTCGGTTGGACAGAATGAGGGGGTGCCTCTTCATCTCAGGAATGCACCGACTAAGCTGATGAAGGATTTTGGGTATGGGAAAGGATATATATACACTCCTGACGATCCCTCTGCAGAACAGAGATTTCTACCGCCATCACTTGAAGGTTACAAGTTTCTGGATTGGTCAATCAGTAATGACACTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

540

Amino Acids

58.65

Weight (kDa)

6.25

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	3 - 38	3.1e-08	UBA-like domain
RuvB_N	PF05496	122 - 245	6.3e-10	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	156 - 267	3.6e-17	ATPase family associated with various cellular activities (AAA)
AAA_assoc_2	PF16193	301 - 382	8e-25	AAA C-terminal domain
MgsA_C	PF12002	383 - 529	3.6e-56	MgsA AAA+ ATPase C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24290
fragaria_vesca	FvH4_5g33930 FvH4_5g33930
malus_domestica	MD03G1299000.v1.1
pyrus_communis	pycom03g23710
rosa_chinensis	RchiOBHm_Chr7g0233321
rosa_laevigata	RLG00000001279
rosa_multiflora	Rmu_sc0000863.1_g000006 Rmu_sc0000863.1_g000007 Rmu_sc0000863.1_g000049 Rmu_sc0003865.1_g000005 Rmu_sc0010461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227410
rosa_rugosa	Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh7AG435800 Rh7BG408100 Rh7BG408500 Rh7CG455000 Rh7DG424500 Rh7DG424900
rosa_wichuraiana	Rw7G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1395
AatII	GACGTC	2 cut(s)	390, 597
AccB1I	GGYRCC	3 cut(s)	485, 743, 1453
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccBSI	CCGCTC	4 cut(s)	83, 432, 784, 857
AccII	CGCG	2 cut(s)	335, 1222
AclWI	GGATC	1 cut(s)	1529
AcoI	YGGCCR	2 cut(s)	394, 640
AcsI	RAATTY	1 cut(s)	202
AcyI	GRCGYC	6 cut(s)	387, 585, 594, 603, 744, 1019
AdeI	CACNNNGTG	1 cut(s)	1352
AfaI	GTAC	1 cut(s)	1214
AfiI	CCNNNNNNNGG	5 cut(s)	99, 488, 543, 624, 856
AgeI	ACCGGT	1 cut(s)	552
AgsI	TTSAA	3 cut(s)	201, 682, 1574
AjnI	CCWGG	2 cut(s)	371, 396
AluBI	AGCT	8 cut(s)	16, 634, 992, 1004, 1034, 1286, 1304, 1486
AluI	AGCT	8 cut(s)	16, 634, 992, 1004, 1034, 1286, 1304, 1486
Alw21I	GWGCWC	1 cut(s)	1110
Alw26I	GTCTC	4 cut(s)	458, 565, 795, 801
AlwI	GGATC	1 cut(s)	1529
AlwNI	CAGNNNCTG	2 cut(s)	1004, 1034
Ama87I	CYCGRG	2 cut(s)	798, 1008
AoxI	GGCC	7 cut(s)	336, 368, 394, 475, 545, 615, 640
ApaI	GGGCCC	1 cut(s)	479
ApeKI	GCWGC	8 cut(s)	13, 62, 691, 726, 1001, 1004, 1163, 1412
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AsiGI	ACCGGT	1 cut(s)	552
Asp700I	GAANNNNTTC	1 cut(s)	924
AspLEI	GCGC	6 cut(s)	273, 363, 746, 1129, 1222, 1224
AsuC2I	CCSGG	3 cut(s)	483, 544, 619
AsuHPI	GGTGA	3 cut(s)	568, 724, 1435
AvaI	CYCGRG	2 cut(s)	798, 1008
AvaII	GGWCC	4 cut(s)	375, 400, 648, 1264
BaeGI	GKGCMC	1 cut(s)	479
BanI	GGYRCC	3 cut(s)	485, 743, 1453
BanII	GRGCYC	2 cut(s)	479, 827
BauI	CACGAG	1 cut(s)	1229
BbsI	GAAGAC	3 cut(s)	460, 726, 727
Bbv12I	GWGCWC	1 cut(s)	1110
BbvI	GCAGC	8 cut(s)	25, 49, 703, 738, 991, 1013, 1150, 1424
BccI	CCATC	6 cut(s)	509, 521, 614, 1180, 1573, 1610
BceAI	ACGGC	3 cut(s)	557, 655, 739
BcgI	CGANNNNNNTGC	6 cut(s)	265, 299, 938, 972, 1523, 1557
BciT130I	CCWGG	2 cut(s)	373, 398
BciVI	GTATCC	1 cut(s)	96
BclI	TGATCA	1 cut(s)	774
BcnI	CCSGG	3 cut(s)	483, 544, 619
BcoDI	GTCTC	4 cut(s)	458, 565, 795, 801
BfaI	CTAG	1 cut(s)	960
BfmI	CTRYAG	1 cut(s)	1542
BfoI	RGCGCY	2 cut(s)	274, 747
BfuI	GTATCC	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	483
Bme1390I	CCNGG	5 cut(s)	373, 398, 483, 544, 619
Bme18I	GGWCC	4 cut(s)	375, 400, 648, 1264
BmeT110I	CYCGRG	2 cut(s)	798, 1008
BmiI	GGNNCC	9 cut(s)	377, 476, 477, 487, 745, 1206, 1266, 1374, 1455
BmrFI	CCNGG	5 cut(s)	373, 398, 483, 544, 619
BmsI	GCATC	4 cut(s)	888, 946, 1042, 1144
BpiI	GAAGAC	3 cut(s)	460, 726, 727
BplI	GAGNNNNNCTC	2 cut(s)	954, 986
BpuEI	CTTGAG	1 cut(s)	841
BpuMI	CCSGG	3 cut(s)	483, 544, 619
BsaHI	GRCGYC	6 cut(s)	387, 585, 594, 603, 744, 1019
BsaI	GGTCTC	1 cut(s)	801
BsaJI	CCNNGG	4 cut(s)	333, 371, 1044, 1056
BsaWI	WCCGGW	1 cut(s)	552
BsaXI	ACNNNNNCTCC	7 cut(s)	32, 395, 425, 512, 542, 1196, 1226
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 488, 543, 624, 856
Bse118I	RCCGGY	6 cut(s)	68, 488, 552, 581, 709, 1224
Bse3DI	GCAATG	5 cut(s)	1064, 1076, 1215, 1339, 1407
BseBI	CCWGG	2 cut(s)	373, 398
BseDI	CCNNGG	4 cut(s)	333, 371, 1044, 1056
BseGI	GGATG	5 cut(s)	128, 903, 1057, 1108, 1191
BseLI	CCNNNNNNNGG	5 cut(s)	99, 488, 543, 624, 856
BseMI	GCAATG	5 cut(s)	1064, 1076, 1215, 1339, 1407
BseMII	CTCAG	3 cut(s)	744, 1002, 1480
BsePI	GCGCGC	1 cut(s)	1220
BseRI	GAGGAG	6 cut(s)	398, 416, 520, 523, 929, 1441
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	8 cut(s)	25, 49, 703, 738, 991, 1013, 1150, 1424
BsgI	GTGCAG	1 cut(s)	1431
Bsh1236I	CGCG	2 cut(s)	335, 1222
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	7 cut(s)	338, 370, 396, 477, 547, 617, 642
BshNI	GGYRCC	3 cut(s)	485, 743, 1453
BshTI	ACCGGT	1 cut(s)	552
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	1110
BsiHKCI	CYCGRG	2 cut(s)	798, 1008
BslFI	GGGAC	2 cut(s)	272, 614
BslI	CCNNNNNNNGG	5 cut(s)	99, 488, 543, 624, 856
BsmAI	GTCTC	4 cut(s)	458, 565, 795, 801
BsmBI	CGTCTC	2 cut(s)	458, 565
BsmFI	GGGAC	2 cut(s)	272, 614
BsmI	GAATGC	2 cut(s)	1326, 1477
BsnI	GGCC	7 cut(s)	338, 370, 396, 477, 547, 617, 642
Bso31I	GGTCTC	1 cut(s)	801
BsoBI	CYCGRG	2 cut(s)	798, 1008
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	3 cut(s)	479, 827, 1110
Bsp1407I	TGTACA	1 cut(s)	1212
Bsp143I	GATC	5 cut(s)	166, 714, 774, 808, 1534
BspANI	GGCC	7 cut(s)	338, 370, 396, 477, 547, 617, 642
BspCNI	CTCAG	3 cut(s)	745, 1001, 1479
BspFNI	CGCG	2 cut(s)	335, 1222
BspLI	GGNNCC	9 cut(s)	377, 476, 477, 487, 745, 1206, 1266, 1374, 1455
BspMAI	CTGCAG	1 cut(s)	1546
BspPI	GGATC	1 cut(s)	1529
BspT107I	GGYRCC	3 cut(s)	485, 743, 1453
BspTNI	GGTCTC	1 cut(s)	801
BsrBI	CCGCTC	4 cut(s)	83, 432, 784, 857
BsrDI	GCAATG	5 cut(s)	1064, 1076, 1215, 1339, 1407
BsrFI	RCCGGY	6 cut(s)	68, 488, 552, 581, 709, 1224
BsrGI	TGTACA	1 cut(s)	1212
BssAI	RCCGGY	6 cut(s)	68, 488, 552, 581, 709, 1224
BssECI	CCNNGG	4 cut(s)	333, 371, 1044, 1056
BssHII	GCGCGC	1 cut(s)	1220
BssMI	GATC	5 cut(s)	166, 714, 774, 808, 1534
BssNI	GRCGYC	6 cut(s)	387, 585, 594, 603, 744, 1019
BssSI	CACGAG	1 cut(s)	1229
BssT1I	CCWWGG	2 cut(s)	1044, 1056
Bst2BI	CACGAG	1 cut(s)	1229
Bst2UI	CCWGG	2 cut(s)	373, 398
Bst4CI	ACNGT	3 cut(s)	243, 652, 1350
Bst6I	CTCTTC	3 cut(s)	617, 662, 1464
BstACI	GRCGYC	6 cut(s)	387, 585, 594, 603, 744, 1019
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstAUI	TGTACA	1 cut(s)	1212
BstDEI	CTNAG	4 cut(s)	753, 988, 1466, 1482
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	5 cut(s)	128, 903, 1057, 1108, 1191
BstFNI	CGCG	2 cut(s)	335, 1222
BstH2I	RGCGCY	2 cut(s)	274, 747
BstHHI	GCGC	6 cut(s)	273, 363, 746, 1129, 1222, 1224
BstKTI	GATC	5 cut(s)	169, 717, 777, 811, 1537
BstMAI	GTCTC	4 cut(s)	458, 565, 795, 801
BstMBI	GATC	5 cut(s)	166, 714, 774, 808, 1534
BstMCI	CGRYCG	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	373, 398
BstNSI	RCATGY	2 cut(s)	367, 1082
BstSCI	CCNGG	5 cut(s)	371, 396, 481, 542, 617
BstSFI	CTRYAG	1 cut(s)	1542
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	2 cut(s)	335, 1222
BstV1I	GCAGC	8 cut(s)	25, 49, 703, 738, 991, 1013, 1150, 1424
BstV2I	GAAGAC	3 cut(s)	460, 726, 727
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	7 cut(s)	338, 370, 396, 477, 547, 617, 642
BtgI	CCRYGG	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	5 cut(s)	128, 903, 1057, 1108, 1191
BtsIMutI	CAGTG	4 cut(s)	750, 1129, 1355, 1611
CaiI	CAGNNNCTG	2 cut(s)	1004, 1034
CfoI	GCGC	6 cut(s)	273, 363, 746, 1129, 1222, 1224
Cfr10I	RCCGGY	6 cut(s)	68, 488, 552, 581, 709, 1224
Cfr42I	CCGCGG	1 cut(s)	336
CseI	GACGC	4 cut(s)	440, 574, 611, 1027
Csp6I	GTAC	1 cut(s)	1213
CspAI	ACCGGT	1 cut(s)	552
CviAII	CATG	4 cut(s)	25, 364, 739, 1079
CviQI	GTAC	1 cut(s)	1213
DdeI	CTNAG	4 cut(s)	753, 988, 1466, 1482
DinI	GGCGCC	1 cut(s)	745
DpnI	GATC	5 cut(s)	168, 716, 776, 810, 1536
DpnII	GATC	5 cut(s)	166, 714, 774, 808, 1534
DraIII	CACNNNGTG	1 cut(s)	1352
EaeI	YGGCCR	2 cut(s)	394, 640
Eam1104I	CTCTTC	3 cut(s)	617, 662, 1464
EarI	CTCTTC	3 cut(s)	617, 662, 1464
EciI	GGCGGA	6 cut(s)	514, 526, 559, 875, 928, 1277
Eco130I	CCWWGG	2 cut(s)	1044, 1056
Eco24I	GRGCYC	2 cut(s)	479, 827
Eco31I	GGTCTC	1 cut(s)	801
Eco47I	GGWCC	4 cut(s)	375, 400, 648, 1264
Eco88I	CYCGRG	2 cut(s)	798, 1008
EcoO109I	RGGNCCY	2 cut(s)	375, 475
EcoRII	CCWGG	2 cut(s)	371, 396
EcoT14I	CCWWGG	2 cut(s)	1044, 1056
EcoT22I	ATGCAT	1 cut(s)	979
EcoT38I	GRGCYC	2 cut(s)	479, 827
EgeI	GGCGCC	1 cut(s)	745
EheI	GGCGCC	1 cut(s)	745
ErhI	CCWWGG	2 cut(s)	1044, 1056
Esp3I	CGTCTC	2 cut(s)	458, 565
FaeI	CATG	4 cut(s)	28, 367, 742, 1082
FaqI	GGGAC	2 cut(s)	272, 614
FatI	CATG	4 cut(s)	24, 363, 738, 1078
FauI	CCCGC	3 cut(s)	306, 331, 834
FbaI	TGATCA	1 cut(s)	774
FokI	GGATG	5 cut(s)	115, 910, 1064, 1115, 1198
FriOI	GRGCYC	2 cut(s)	479, 827
FspBI	CTAG	1 cut(s)	960
GlaI	GCGC	6 cut(s)	272, 362, 745, 1128, 1221, 1223
HaeII	RGCGCY	2 cut(s)	274, 747
HaeIII	GGCC	7 cut(s)	338, 370, 396, 477, 547, 617, 642
HgaI	GACGC	4 cut(s)	440, 574, 611, 1027
HhaI	GCGC	6 cut(s)	273, 363, 746, 1129, 1222, 1224
Hin1I	GRCGYC	6 cut(s)	387, 585, 594, 603, 744, 1019
Hin1II	CATG	4 cut(s)	28, 367, 742, 1082
Hin6I	GCGC	6 cut(s)	271, 361, 744, 1127, 1220, 1222
HinP1I	GCGC	6 cut(s)	271, 361, 744, 1127, 1220, 1222
HindIII	AAGCTT	1 cut(s)	1302
HinfI	GANTC	3 cut(s)	698, 1025, 1339
HphI	GGTGA	3 cut(s)	568, 724, 1435
Hpy166II	GTNNAC	2 cut(s)	246, 673
Hpy188I	TCNGA	7 cut(s)	316, 358, 871, 878, 888, 1090, 1377
Hpy188III	TCNNGA	6 cut(s)	798, 806, 1231, 1468, 1529, 1589
Hpy8I	GTNNAC	2 cut(s)	246, 673
Hpy99I	CGWCG	8 cut(s)	389, 392, 395, 614, 668, 766, 953, 1021
HpyAV	CCTTC	4 cut(s)	204, 468, 1486, 1568
HpyCH4III	ACNGT	3 cut(s)	243, 652, 1350
HpyCH4IV	ACGT	2 cut(s)	387, 594
HpyCH4V	TGCA	9 cut(s)	901, 977, 1069, 1074, 1332, 1346, 1412, 1475, 1544
HpyF3I	CTNAG	4 cut(s)	753, 988, 1466, 1482
HpySE526I	ACGT	2 cut(s)	387, 594
Hsp92I	GRCGYC	6 cut(s)	387, 585, 594, 603, 744, 1019
Hsp92II	CATG	4 cut(s)	28, 367, 742, 1082
HspAI	GCGC	6 cut(s)	271, 361, 744, 1127, 1220, 1222
KasI	GGCGCC	1 cut(s)	743
KroI	GCCGGC	2 cut(s)	581, 1224
KroNI	GCCGGC	2 cut(s)	583, 1226
Ksp22I	TGATCA	1 cut(s)	774
KspI	CCGCGG	1 cut(s)	336
Kzo9I	GATC	5 cut(s)	166, 714, 774, 808, 1534
LmnI	GCTCC	6 cut(s)	10, 358, 437, 888, 1204, 1378
Lsp1109I	GCAGC	8 cut(s)	25, 49, 703, 738, 991, 1013, 1150, 1424
LweI	GCATC	4 cut(s)	888, 946, 1042, 1144
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	2 cut(s)	387, 594
MaeIII	GTNAC	5 cut(s)	574, 1039, 1295, 1307, 1577
MalI	GATC	5 cut(s)	168, 716, 776, 810, 1536
MbiI	CCGCTC	4 cut(s)	83, 432, 784, 857
MboI	GATC	5 cut(s)	166, 714, 774, 808, 1534
MfeI	CAATTG	1 cut(s)	943
MhlI	GDGCHC	3 cut(s)	479, 827, 1110
MluCI	AATT	3 cut(s)	115, 202, 943
Mly113I	GGCGCC	1 cut(s)	744
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	2 cut(s)	336, 1417
Mph1103I	ATGCAT	1 cut(s)	979
MreI	CGCCGGCG	1 cut(s)	581
MroNI	GCCGGC	2 cut(s)	581, 1224
MroXI	GAANNNNTTC	1 cut(s)	924
MseI	TTAA	2 cut(s)	20, 1278
MslI	CAYNNNNRTG	1 cut(s)	1069
MspA1I	CMGCKG	3 cut(s)	16, 335, 1004
MspR9I	CCNGG	5 cut(s)	373, 398, 483, 544, 619
MunI	CAATTG	1 cut(s)	943
Mva1269I	GAATGC	2 cut(s)	1326, 1477
MvaI	CCWGG	2 cut(s)	373, 398
MvnI	CGCG	2 cut(s)	335, 1222
NaeI	GCCGGC	2 cut(s)	583, 1226
NarI	GGCGCC	1 cut(s)	744
NciI	CCSGG	3 cut(s)	483, 544, 619
NdeII	GATC	5 cut(s)	166, 714, 774, 808, 1534
NgoMIV	GCCGGC	2 cut(s)	581, 1224
NlaIII	CATG	4 cut(s)	28, 367, 742, 1082
NlaIV	GGNNCC	9 cut(s)	377, 476, 477, 487, 745, 1206, 1266, 1374, 1455
NmuCI	GTSAC	2 cut(s)	574, 1307
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	2 cut(s)	367, 1082
PaeI	GCATGC	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	798
PauI	GCGCGC	1 cut(s)	1220
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PctI	GAATGC	2 cut(s)	1326, 1477
PdiI	GCCGGC	2 cut(s)	583, 1226
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	2 cut(s)	1025, 1339
PflFI	GACNNNGTC	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	99
PinAI	ACCGGT	1 cut(s)	552
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	1 cut(s)	692
PluTI	GGCGCC	1 cut(s)	747
PpsI	GAGTC	1 cut(s)	692
PpuMI	RGGWCCY	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	1395
Psp5II	RGGWCCY	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	371, 396
PspGI	CCWGG	2 cut(s)	371, 396
PspN4I	GGNNCC	9 cut(s)	377, 476, 477, 487, 745, 1206, 1266, 1374, 1455
PspOMI	GGGCCC	1 cut(s)	475
PspPPI	RGGWCCY	1 cut(s)	375
PstI	CTGCAG	1 cut(s)	1546
PstNI	CAGNNNCTG	2 cut(s)	1004, 1034
PsyI	GACNNNGTC	1 cut(s)	389
PteI	GCGCGC	1 cut(s)	1220
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	2 cut(s)	16, 1004
RsaI	GTAC	1 cut(s)	1214
RsaNI	GTAC	1 cut(s)	1213
RseI	CAYNNNNRTG	1 cut(s)	1069
SacII	CCGCGG	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	20, 1278
Sau3AI	GATC	5 cut(s)	166, 714, 774, 808, 1534
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	5 cut(s)	373, 398, 483, 544, 619
SduI	GDGCHC	3 cut(s)	479, 827, 1110
SfaNI	GCATC	4 cut(s)	888, 946, 1042, 1144
SfcI	CTRYAG	1 cut(s)	1542
SfoI	GGCGCC	1 cut(s)	745
Sfr274I	CTCGAG	1 cut(s)	798
Sfr303I	CCGCGG	1 cut(s)	336
SgrAI	CRCCGGYG	2 cut(s)	68, 581
SgrBI	CCGCGG	1 cut(s)	336
SinI	GGWCC	4 cut(s)	375, 400, 648, 1264
SlaI	CTCGAG	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	1069
SmlI	CTYRAG	2 cut(s)	798, 820
SmoI	CTYRAG	2 cut(s)	798, 820
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	3 cut(s)	115, 202, 943
SspDI	GGCGCC	1 cut(s)	743
SspMI	CTAG	1 cut(s)	960
StyD4I	CCNGG	5 cut(s)	371, 396, 481, 542, 617
StyI	CCWWGG	2 cut(s)	1044, 1056
TaaI	ACNGT	3 cut(s)	243, 652, 1350
TaiI	ACGT	2 cut(s)	390, 597
TaqI	TCGA	7 cut(s)	165, 609, 663, 717, 799, 814, 1016
TaqII	GACCGA	1 cut(s)	783
TasI	AATT	3 cut(s)	115, 202, 943
TatI	WGTACW	1 cut(s)	1212
TfiI	GAWTC	2 cut(s)	1025, 1339
Tru1I	TTAA	2 cut(s)	20, 1278
Tru9I	TTAA	2 cut(s)	20, 1278
TscAI	CASTG	4 cut(s)	757, 1129, 1355, 1618
TseFI	GTSAC	2 cut(s)	574, 1307
TseI	GCWGC	8 cut(s)	13, 62, 691, 726, 1001, 1004, 1163, 1412
Tsp45I	GTSAC	2 cut(s)	574, 1307
TspDTI	ATGAA	5 cut(s)	649, 727, 1418, 1451, 1505
TspGWI	ACGGA	1 cut(s)	966
TspRI	CASTG	4 cut(s)	757, 1129, 1355, 1618
Tth111I	GACNNNGTC	1 cut(s)	389
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	4 cut(s)	375, 400, 648, 1264
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	2 cut(s)	367, 1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1249
XhoI	CTCGAG	1 cut(s)	798
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	1 cut(s)	960
ZraI	GACGTC	2 cut(s)	388, 595
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.