Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009307

Physical Location & Seq

Genomic Coordinates Reverse (-)

11511944 .. 11517523

Gene Structure 5580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGTCTCTTACTCTCTTTCGTTTTCAAGAACTCGACCAGAGAAATAGAGTTGGAAAACAGTGGGAGATGGAAATGGAGCAGCTGTTAAGCATGGGCTTCCCCACCGACCTCGCCGCCGAAGCCCTCGCTGCTACCGGCGGCAACTCCGTTCTCAAAGCCACCGATTGGATTCTCAACCGCAATTCCTCCACCACCGCCACCTCCACTCCCACCGCCACCTCTCAACCCAAACTCGATCGCTTCTTCCTCTCCCAATCCCCAAGTTCACAATCCCAAGACAAACAAGAACCAGAAGAACAACAGTCCACCCCAACCTCCCAACTCCCCAAGCGCCGCAAACTCCTCGTCCCGGAAACCCCGCCGCCCGCTACCTCCGATAAACCCGCAACCGCCGCGGCCCACCACCTGCCCTTGTCGGAGCGCATGCGGCCCAGGACCCTAAATGACGTCGTCGGCCAGGACCACCTCCTCGCCCCTAACTCCCTCCTCCGCTCCGCAATCAAATGCGAGCGTCTCCCTTCCCTCGTCTTCTGGGGCCCACCCGGCTCCGGCAAGACCTCCATCGCCAAAGCGATCATCAACTCCGCCTCCTCCTCCGCCGCCCGGCCCTACCGGTTCGTCTCGCTCTCCGCCGTCACCGCCGGCGTCAAAGACGTCAGGGACGCCATCGACGAGGCCCGGAAGAGGAAGAAGCTGAACGGCCAGAGAACCGTTCTCTTCATCGACGAGGTTCACAGGTTCAACAAGTCGCAGCAGGACTCTTTCTTGCCGGTGATCGAAGACGGCAGCATAGTCTTCATGGGCGCCACCACTGAGAACCCTTCGTTCCATTTGATCACGCCGCTCTTGTCTAGGTCTCGAGTTCTTGATCTTCGACCCTTGAGCCCGCAATCTATAGAGGTTCTTCTCCGGCGAGCGGCGGAAAACTCTGAAATCGGATTGGCTCGGAGTGTGGGGATGCAAGTGGATGTGGAGGAGGAAGTCATTCGTTTTATCTCTGCCAATTGCGACGGCGATGCTAGAGTGGCACTCAATGCATTGGAAATCTCAGCTACAACAGCAGCTGCCCGAGCCTCGACGCCGGATTCAGTAGCTGCTGTTTCCTTGGAGGATGCCAAGGAAGCATTGCAGTGCAAGCATGTGGCTTCGGACAAAGCAGGGGATGAGCACTACAACCTCATCAGTGCGCTTCACAAGTCTATGAGAGGAAGTGATGCCAATGCTGCTATTTATTGGTTGGCAAGGATGCTTGAGGGAGGGCAGGAGCCTCTGTACATTGCGCGCCGGCTCGTGAGGTTTGCCAGCGAAGATGTGGGGCTGGCGGACCCGTTGGCACTCAATCAAGCTGTGGCTTGTTTCCAAGCTTGTCACTTTATTGGAATGCCAGAGTGCAATGTGATTCTTGCACAGTGTGTGGCTTACTTGGCTTTGGCTCCGAAATCGGTTGCTGTTTATAAAGCAATGAATAGTGCAGCAGAAGTGGTGAGGAGTTCGGTTGGACAGAATGAGGGGGTGCCTCTTCATCTCAGGAATGCACCGACTAAGCTGATGAAGGATTTTGGGTATGGGAAAGGATATATATACACTCCTGACAATCCCTCTGCAGAACAGAGATTTCTACCGCCATCACTTGAAGGTTACAAGTTTCTGGATTGGCCAATCAGTAATGACACTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

560

Amino Acids

61.07

Weight (kDa)

6.58

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	25 - 60	8.7e-09	UBA-like domain
RuvB_N	PF05496	142 - 265	1.1e-09	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	176 - 287	2.3e-16	ATPase family associated with various cellular activities (AAA)
AAA_assoc_2	PF16193	321 - 402	1.1e-24	AAA C-terminal domain
MgsA_C	PF12002	403 - 549	2.5e-56	MgsA AAA+ ATPase C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24290
fragaria_vesca	FvH4_5g33930 FvH4_5g33930
malus_domestica	MD03G1299000.v1.1
pyrus_communis	pycom03g23710
rosa_chinensis	RchiOBHm_Chr7g0233321
rosa_laevigata	RLG00000001279
rosa_multiflora	Rmu_sc0000863.1_g000006 Rmu_sc0000863.1_g000007 Rmu_sc0000863.1_g000049 Rmu_sc0003865.1_g000005 Rmu_sc0010461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227410
rosa_rugosa	Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh7AG435800 Rh7BG408100 Rh7BG408500 Rh7CG455000 Rh7DG424500 Rh7DG424900
rosa_wichuraiana	Rw7G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1455
AarI	CACCTGC	1 cut(s)	414
AatII	GACGTC	2 cut(s)	450, 657
Acc36I	ACCTGC	1 cut(s)	414
AccB1I	GGYRCC	2 cut(s)	803, 1513
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccBSI	CCGCTC	3 cut(s)	492, 844, 917
AccII	CGCG	2 cut(s)	395, 1282
AcoI	YGGCCR	3 cut(s)	454, 700, 1655
AcyI	GRCGYC	6 cut(s)	447, 645, 654, 663, 804, 1079
AdeI	CACNNNGTG	1 cut(s)	1412
AfaI	GTAC	1 cut(s)	1274
AfiI	CCNNNNNNNGG	6 cut(s)	165, 349, 548, 603, 684, 916
AgeI	ACCGGT	1 cut(s)	612
AgsI	TTSAA	3 cut(s)	26, 742, 1634
AjnI	CCWGG	2 cut(s)	431, 456
AluBI	AGCT	8 cut(s)	82, 694, 1052, 1064, 1094, 1346, 1364, 1546
AluI	AGCT	8 cut(s)	82, 694, 1052, 1064, 1094, 1346, 1364, 1546
Alw21I	GWGCWC	1 cut(s)	1170
Alw26I	GTCTC	4 cut(s)	9, 518, 625, 861
AlwNI	CAGNNNCTG	2 cut(s)	1064, 1094
Ama87I	CYCGRG	2 cut(s)	858, 1068
AoxI	GGCC	8 cut(s)	396, 428, 454, 535, 605, 675, 700, 1655
ApaI	GGGCCC	1 cut(s)	539
ApeKI	GCWGC	9 cut(s)	79, 128, 751, 786, 1061, 1064, 1094, 1223, 1472
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
AsiGI	ACCGGT	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	984
AspLEI	GCGC	6 cut(s)	333, 423, 806, 1189, 1282, 1284
AspS9I	GGNCC	9 cut(s)	397, 429, 435, 460, 535, 536, 606, 676, 1324
AsuC2I	CCSGG	4 cut(s)	350, 543, 604, 679
AsuHPI	GGTGA	3 cut(s)	628, 784, 1495
AvaI	CYCGRG	2 cut(s)	858, 1068
AvaII	GGWCC	3 cut(s)	435, 460, 1324
BaeGI	GKGCMC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	1657
BanI	GGYRCC	2 cut(s)	803, 1513
BanII	GRGCYC	2 cut(s)	539, 887
BauI	CACGAG	1 cut(s)	1289
BbsI	GAAGAC	3 cut(s)	520, 786, 787
Bbv12I	GWGCWC	1 cut(s)	1170
BbvI	GCAGC	9 cut(s)	91, 115, 763, 798, 1051, 1073, 1081, 1210, 1484
BccI	CCATC	5 cut(s)	61, 569, 674, 1633, 1670
BceAI	ACGGC	4 cut(s)	617, 715, 799, 1027
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 998, 1032
BciT130I	CCWGG	2 cut(s)	433, 458
BclI	TGATCA	1 cut(s)	834
BcnI	CCSGG	4 cut(s)	350, 543, 604, 679
BcoDI	GTCTC	4 cut(s)	9, 518, 625, 861
BfaI	CTAG	2 cut(s)	852, 1020
BfmI	CTRYAG	2 cut(s)	894, 1602
BfoI	RGCGCY	2 cut(s)	334, 807
BfuAI	ACCTGC	1 cut(s)	414
BglI	GCCNNNNNGGC	1 cut(s)	543
Bme1390I	CCNGG	6 cut(s)	350, 433, 458, 543, 604, 679
Bme18I	GGWCC	3 cut(s)	435, 460, 1324
BmeT110I	CYCGRG	2 cut(s)	858, 1068
BmgT120I	GGNCC	9 cut(s)	397, 429, 435, 460, 535, 536, 606, 676, 1324
BmiI	GGNNCC	9 cut(s)	437, 536, 537, 547, 805, 1266, 1326, 1434, 1515
BmrFI	CCNGG	6 cut(s)	350, 433, 458, 543, 604, 679
BmsI	GCATC	5 cut(s)	948, 1006, 1102, 1204, 1236
BpiI	GAAGAC	3 cut(s)	520, 786, 787
BplI	GAGNNNNNCTC	2 cut(s)	1014, 1046
BpuEI	CTTGAG	2 cut(s)	901, 1271
BpuMI	CCSGG	4 cut(s)	350, 543, 604, 679
BsaHI	GRCGYC	6 cut(s)	447, 645, 654, 663, 804, 1079
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	4 cut(s)	393, 431, 1104, 1116
BsaWI	WCCGGW	1 cut(s)	612
BsaXI	ACNNNNNCTCC	8 cut(s)	68, 98, 190, 220, 572, 602, 1256, 1286
Bsc4I	CCNNNNNNNGG	6 cut(s)	165, 349, 548, 603, 684, 916
Bse118I	RCCGGY	5 cut(s)	134, 612, 641, 769, 1284
Bse3DI	GCAATG	4 cut(s)	1124, 1275, 1399, 1467
BseBI	CCWGG	2 cut(s)	433, 458
BseDI	CCNNGG	4 cut(s)	393, 431, 1104, 1116
BseGI	GGATG	5 cut(s)	963, 973, 1117, 1168, 1251
BseLI	CCNNNNNNNGG	6 cut(s)	165, 349, 548, 603, 684, 916
BseMI	GCAATG	4 cut(s)	1124, 1275, 1399, 1467
BseMII	CTCAG	3 cut(s)	804, 1062, 1540
BsePI	GCGCGC	1 cut(s)	1280
BseRI	GAGGAG	7 cut(s)	332, 458, 476, 580, 583, 989, 1501
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	9 cut(s)	91, 115, 763, 798, 1051, 1073, 1081, 1210, 1484
BsgI	GTGCAG	1 cut(s)	1491
Bsh1236I	CGCG	2 cut(s)	395, 1282
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	8 cut(s)	398, 430, 456, 537, 607, 677, 702, 1657
BshNI	GGYRCC	2 cut(s)	803, 1513
BshTI	ACCGGT	1 cut(s)	612
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	1170
BsiHKCI	CYCGRG	2 cut(s)	858, 1068
BslFI	GGGAC	2 cut(s)	332, 674
BslI	CCNNNNNNNGG	6 cut(s)	165, 349, 548, 603, 684, 916
BsmAI	GTCTC	4 cut(s)	9, 518, 625, 861
BsmBI	CGTCTC	2 cut(s)	518, 625
BsmFI	GGGAC	2 cut(s)	332, 674
BsmI	GAATGC	2 cut(s)	1386, 1537
BsnI	GGCC	8 cut(s)	398, 430, 456, 537, 607, 677, 702, 1657
Bso31I	GGTCTC	1 cut(s)	861
BsoBI	CYCGRG	2 cut(s)	858, 1068
Bsp120I	GGGCCC	1 cut(s)	535
Bsp1286I	GDGCHC	3 cut(s)	539, 887, 1170
Bsp1407I	TGTACA	1 cut(s)	1272
Bsp143I	GATC	5 cut(s)	235, 573, 774, 834, 868
BspANI	GGCC	8 cut(s)	398, 430, 456, 537, 607, 677, 702, 1657
BspCNI	CTCAG	3 cut(s)	805, 1061, 1539
BspFNI	CGCG	2 cut(s)	395, 1282
BspLI	GGNNCC	9 cut(s)	437, 536, 537, 547, 805, 1266, 1326, 1434, 1515
BspMAI	CTGCAG	1 cut(s)	1606
BspMI	ACCTGC	1 cut(s)	414
BspT107I	GGYRCC	2 cut(s)	803, 1513
BspTNI	GGTCTC	1 cut(s)	861
BsrBI	CCGCTC	3 cut(s)	492, 844, 917
BsrDI	GCAATG	4 cut(s)	1124, 1275, 1399, 1467
BsrFI	RCCGGY	5 cut(s)	134, 612, 641, 769, 1284
BsrGI	TGTACA	1 cut(s)	1272
BssAI	RCCGGY	5 cut(s)	134, 612, 641, 769, 1284
BssECI	CCNNGG	4 cut(s)	393, 431, 1104, 1116
BssHII	GCGCGC	1 cut(s)	1280
BssMI	GATC	5 cut(s)	235, 573, 774, 834, 868
BssNI	GRCGYC	6 cut(s)	447, 645, 654, 663, 804, 1079
BssSI	CACGAG	1 cut(s)	1289
BssT1I	CCWWGG	2 cut(s)	1104, 1116
Bst2BI	CACGAG	1 cut(s)	1289
Bst2UI	CCWGG	2 cut(s)	433, 458
Bst4CI	ACNGT	4 cut(s)	60, 303, 712, 1410
Bst6I	CTCTTC	3 cut(s)	677, 722, 1524
BstACI	GRCGYC	6 cut(s)	447, 645, 654, 663, 804, 1079
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstAUI	TGTACA	1 cut(s)	1272
BstDEI	CTNAG	4 cut(s)	813, 1048, 1526, 1542
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	5 cut(s)	963, 973, 1117, 1168, 1251
BstFNI	CGCG	2 cut(s)	395, 1282
BstH2I	RGCGCY	2 cut(s)	334, 807
BstHHI	GCGC	6 cut(s)	333, 423, 806, 1189, 1282, 1284
BstKTI	GATC	5 cut(s)	238, 576, 777, 837, 871
BstMAI	GTCTC	4 cut(s)	9, 518, 625, 861
BstMBI	GATC	5 cut(s)	235, 573, 774, 834, 868
BstMCI	CGRYCG	1 cut(s)	238
BstNI	CCWGG	2 cut(s)	433, 458
BstNSI	RCATGY	2 cut(s)	427, 1142
BstSCI	CCNGG	6 cut(s)	348, 431, 456, 541, 602, 677
BstSFI	CTRYAG	2 cut(s)	894, 1602
BstSLI	GKGCMC	1 cut(s)	539
BstUI	CGCG	2 cut(s)	395, 1282
BstV1I	GCAGC	9 cut(s)	91, 115, 763, 798, 1051, 1073, 1081, 1210, 1484
BstV2I	GAAGAC	3 cut(s)	520, 786, 787
BsuRI	GGCC	8 cut(s)	398, 430, 456, 537, 607, 677, 702, 1657
BtgI	CCRYGG	1 cut(s)	393
BtgZI	GCGATG	2 cut(s)	547, 1029
BtsCI	GGATG	5 cut(s)	963, 973, 1117, 1168, 1251
BtsI	GCAGTG	1 cut(s)	1136
BtsIMutI	CAGTG	6 cut(s)	65, 810, 1136, 1189, 1415, 1671
BveI	ACCTGC	1 cut(s)	414
CaiI	CAGNNNCTG	2 cut(s)	1064, 1094
CfoI	GCGC	6 cut(s)	333, 423, 806, 1189, 1282, 1284
Cfr10I	RCCGGY	5 cut(s)	134, 612, 641, 769, 1284
Cfr13I	GGNCC	9 cut(s)	397, 429, 435, 460, 535, 536, 606, 676, 1324
Cfr42I	CCGCGG	1 cut(s)	396
CseI	GACGC	4 cut(s)	500, 634, 671, 1087
Csp6I	GTAC	1 cut(s)	1273
CspAI	ACCGGT	1 cut(s)	612
CviAII	CATG	4 cut(s)	91, 424, 799, 1139
CviQI	GTAC	1 cut(s)	1273
DdeI	CTNAG	4 cut(s)	813, 1048, 1526, 1542
DinI	GGCGCC	1 cut(s)	805
DpnI	GATC	5 cut(s)	237, 575, 776, 836, 870
DpnII	GATC	5 cut(s)	235, 573, 774, 834, 868
DraIII	CACNNNGTG	1 cut(s)	1412
EaeI	YGGCCR	3 cut(s)	454, 700, 1655
Eam1104I	CTCTTC	3 cut(s)	677, 722, 1524
EarI	CTCTTC	3 cut(s)	677, 722, 1524
EciI	GGCGGA	5 cut(s)	574, 586, 619, 935, 1337
Eco130I	CCWWGG	2 cut(s)	1104, 1116
Eco24I	GRGCYC	2 cut(s)	539, 887
Eco31I	GGTCTC	1 cut(s)	861
Eco47I	GGWCC	3 cut(s)	435, 460, 1324
Eco88I	CYCGRG	2 cut(s)	858, 1068
EcoO109I	RGGNCCY	2 cut(s)	435, 535
EcoRII	CCWGG	2 cut(s)	431, 456
EcoT14I	CCWWGG	2 cut(s)	1104, 1116
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	2 cut(s)	539, 887
EgeI	GGCGCC	1 cut(s)	805
EheI	GGCGCC	1 cut(s)	805
ErhI	CCWWGG	2 cut(s)	1104, 1116
Esp3I	CGTCTC	2 cut(s)	518, 625
FaeI	CATG	4 cut(s)	94, 427, 802, 1142
FaqI	GGGAC	2 cut(s)	332, 674
FatI	CATG	4 cut(s)	90, 423, 798, 1138
FauI	CCCGC	4 cut(s)	366, 373, 391, 894
FbaI	TGATCA	1 cut(s)	834
FokI	GGATG	5 cut(s)	970, 980, 1124, 1175, 1258
FriOI	GRGCYC	2 cut(s)	539, 887
FspBI	CTAG	2 cut(s)	852, 1020
GlaI	GCGC	6 cut(s)	332, 422, 805, 1188, 1281, 1283
HaeII	RGCGCY	2 cut(s)	334, 807
HaeIII	GGCC	8 cut(s)	398, 430, 456, 537, 607, 677, 702, 1657
HgaI	GACGC	4 cut(s)	500, 634, 671, 1087
HhaI	GCGC	6 cut(s)	333, 423, 806, 1189, 1282, 1284
Hin1I	GRCGYC	6 cut(s)	447, 645, 654, 663, 804, 1079
Hin1II	CATG	4 cut(s)	94, 427, 802, 1142
Hin6I	GCGC	6 cut(s)	331, 421, 804, 1187, 1280, 1282
HinP1I	GCGC	6 cut(s)	331, 421, 804, 1187, 1280, 1282
HindIII	AAGCTT	1 cut(s)	1362
HinfI	GANTC	4 cut(s)	169, 758, 1085, 1399
HphI	GGTGA	3 cut(s)	628, 784, 1495
Hpy166II	GTNNAC	3 cut(s)	266, 306, 733
Hpy188I	TCNGA	7 cut(s)	376, 418, 931, 938, 948, 1150, 1437
Hpy188III	TCNNGA	7 cut(s)	26, 858, 866, 1291, 1528, 1589, 1649
Hpy8I	GTNNAC	3 cut(s)	266, 306, 733
Hpy99I	CGWCG	6 cut(s)	452, 455, 674, 728, 1013, 1081
HpyAV	CCTTC	4 cut(s)	528, 831, 1546, 1628
HpyCH4III	ACNGT	4 cut(s)	60, 303, 712, 1410
HpyCH4IV	ACGT	2 cut(s)	447, 654
HpyCH4V	TGCA	9 cut(s)	961, 1037, 1129, 1134, 1392, 1406, 1472, 1535, 1604
HpyF3I	CTNAG	4 cut(s)	813, 1048, 1526, 1542
HpySE526I	ACGT	2 cut(s)	447, 654
Hsp92I	GRCGYC	6 cut(s)	447, 645, 654, 663, 804, 1079
Hsp92II	CATG	4 cut(s)	94, 427, 802, 1142
HspAI	GCGC	6 cut(s)	331, 421, 804, 1187, 1280, 1282
KasI	GGCGCC	1 cut(s)	803
KroI	GCCGGC	2 cut(s)	641, 1284
KroNI	GCCGGC	2 cut(s)	643, 1286
Ksp22I	TGATCA	1 cut(s)	834
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	235, 573, 774, 834, 868
LmnI	GCTCC	6 cut(s)	76, 418, 497, 551, 1264, 1438
Lsp1109I	GCAGC	9 cut(s)	91, 115, 763, 798, 1051, 1073, 1081, 1210, 1484
LweI	GCATC	5 cut(s)	948, 1006, 1102, 1204, 1236
MaeI	CTAG	2 cut(s)	852, 1020
MaeII	ACGT	2 cut(s)	447, 654
MaeIII	GTNAC	3 cut(s)	634, 1367, 1637
MalI	GATC	5 cut(s)	237, 575, 776, 836, 870
MbiI	CCGCTC	3 cut(s)	492, 844, 917
MboI	GATC	5 cut(s)	235, 573, 774, 834, 868
MfeI	CAATTG	1 cut(s)	1003
MhlI	GDGCHC	3 cut(s)	539, 887, 1170
MlsI	TGGCCA	1 cut(s)	1657
MluCI	AATT	2 cut(s)	181, 1003
MluNI	TGGCCA	1 cut(s)	1657
Mly113I	GGCGCC	1 cut(s)	804
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	3 cut(s)	31, 396, 1477
Mox20I	TGGCCA	1 cut(s)	1657
Mph1103I	ATGCAT	1 cut(s)	1039
MreI	CGCCGGCG	1 cut(s)	641
MroNI	GCCGGC	2 cut(s)	641, 1284
MroXI	GAANNNNTTC	1 cut(s)	984
MscI	TGGCCA	1 cut(s)	1657
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	1129
Msp20I	TGGCCA	1 cut(s)	1657
MspA1I	CMGCKG	3 cut(s)	82, 395, 1064
MspR9I	CCNGG	6 cut(s)	350, 433, 458, 543, 604, 679
MunI	CAATTG	1 cut(s)	1003
Mva1269I	GAATGC	2 cut(s)	1386, 1537
MvaI	CCWGG	2 cut(s)	433, 458
MvnI	CGCG	2 cut(s)	395, 1282
NaeI	GCCGGC	2 cut(s)	643, 1286
NarI	GGCGCC	1 cut(s)	804
NciI	CCSGG	4 cut(s)	350, 543, 604, 679
NdeII	GATC	5 cut(s)	235, 573, 774, 834, 868
NgoMIV	GCCGGC	2 cut(s)	641, 1284
NlaIII	CATG	4 cut(s)	94, 427, 802, 1142
NlaIV	GGNNCC	9 cut(s)	437, 536, 537, 547, 805, 1266, 1326, 1434, 1515
NmuCI	GTSAC	2 cut(s)	634, 1367
NsiI	ATGCAT	1 cut(s)	1039
NspI	RCATGY	2 cut(s)	427, 1142
PaeI	GCATGC	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	858
PaqCI	CACCTGC	1 cut(s)	414
PauI	GCGCGC	1 cut(s)	1280
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PctI	GAATGC	2 cut(s)	1386, 1537
PdiI	GCCGGC	2 cut(s)	643, 1286
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	3 cut(s)	169, 1085, 1399
PflFI	GACNNNGTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	165
PfoI	TCCNGGA	1 cut(s)	348
PinAI	ACCGGT	1 cut(s)	612
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	1 cut(s)	752
PluTI	GGCGCC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	752
PpuMI	RGGWCCY	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	1455
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	431, 456
PspGI	CCWGG	2 cut(s)	431, 456
PspN4I	GGNNCC	9 cut(s)	437, 536, 537, 547, 805, 1266, 1326, 1434, 1515
PspOMI	GGGCCC	1 cut(s)	535
PspPI	GGNCC	9 cut(s)	397, 429, 435, 460, 535, 536, 606, 676, 1324
PspPPI	RGGWCCY	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	1606
PstNI	CAGNNNCTG	2 cut(s)	1064, 1094
PsyI	GACNNNGTC	1 cut(s)	449
PteI	GCGCGC	1 cut(s)	1280
PvuI	CGATCG	1 cut(s)	238
PvuII	CAGCTG	2 cut(s)	82, 1064
RsaI	GTAC	1 cut(s)	1274
RsaNI	GTAC	1 cut(s)	1273
RseI	CAYNNNNRTG	1 cut(s)	1129
SacII	CCGCGG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	5 cut(s)	235, 573, 774, 834, 868
Sau96I	GGNCC	9 cut(s)	397, 429, 435, 460, 535, 536, 606, 676, 1324
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	6 cut(s)	350, 433, 458, 543, 604, 679
SduI	GDGCHC	3 cut(s)	539, 887, 1170
SfaNI	GCATC	5 cut(s)	948, 1006, 1102, 1204, 1236
SfcI	CTRYAG	2 cut(s)	894, 1602
SfoI	GGCGCC	1 cut(s)	805
Sfr274I	CTCGAG	1 cut(s)	858
Sfr303I	CCGCGG	1 cut(s)	396
SgrAI	CRCCGGYG	1 cut(s)	641
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	3 cut(s)	435, 460, 1324
SlaI	CTCGAG	1 cut(s)	858
SmiMI	CAYNNNNRTG	1 cut(s)	1129
SmlI	CTYRAG	3 cut(s)	858, 880, 1250
SmoI	CTYRAG	3 cut(s)	858, 880, 1250
SphI	GCATGC	1 cut(s)	427
Sse9I	AATT	2 cut(s)	181, 1003
SspDI	GGCGCC	1 cut(s)	803
SspMI	CTAG	2 cut(s)	852, 1020
StyD4I	CCNGG	6 cut(s)	348, 431, 456, 541, 602, 677
StyI	CCWWGG	2 cut(s)	1104, 1116
TaaI	ACNGT	4 cut(s)	60, 303, 712, 1410
TaiI	ACGT	2 cut(s)	450, 657
TaqI	TCGA	8 cut(s)	33, 234, 669, 723, 777, 859, 874, 1076
TasI	AATT	2 cut(s)	181, 1003
TatI	WGTACW	1 cut(s)	1272
TfiI	GAWTC	3 cut(s)	169, 1085, 1399
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	6 cut(s)	65, 817, 1136, 1189, 1415, 1678
TseFI	GTSAC	2 cut(s)	634, 1367
TseI	GCWGC	9 cut(s)	79, 128, 751, 786, 1061, 1064, 1094, 1223, 1472
Tsp45I	GTSAC	2 cut(s)	634, 1367
TspDTI	ATGAA	5 cut(s)	709, 787, 1478, 1511, 1565
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	6 cut(s)	65, 817, 1136, 1189, 1415, 1678
Tth111I	GACNNNGTC	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	3 cut(s)	435, 460, 1324
XceI	RCATGY	2 cut(s)	427, 1142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1309
XhoI	CTCGAG	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	2 cut(s)	852, 1020
ZraI	GACGTC	2 cut(s)	448, 655
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.