Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009307

Physical Location & Seq

Genomic Coordinates Forward (+)

59901143 .. 59904935

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG455000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGAAATGGAGCAGCTGTTAAGCATGGGCTTCCCCACCGACCTCGCCGCCGAAGCCCTCGCGGCCACCGGCGGCAACTCCGCTCTCAAAGCCACCGATTGGATTCTCAACCGCAATTCCTCCACCACCTCCACCTCCACTCCCATCGCCACCTCTCAACCCAAACTCGATCGCTTCTTCCTCTCCCAATCCCCAAATTCACAATCCCAAGACAAACAAGAACCAGAAGAACAACAGTCCACCCCAACCTCCCAACTCCCCAAGCGCCGCAAACTTCTCGTCCCGGAAACCCCGCCACCCACTACCTCCGATAAACCGGCAACCGCCGCGGCCCACCACCAGCCCTTGTCGGAGCGCATGCGGCCCAGGACCCTAAACGACGTCGTCGGCCAAGACCACCTCCTCGCCCCAGACTCCCTCCTCCGCTCCGCTATCAAATGCGAGCGTCTCCCTTCTCTCGTCTTCTGGGGCCCACCCGGCACCGGCAAGACCTCCATCGCCAAAGCCATCATCAACTCCGCCTCCTCCCCCGCCGCCCGGCCCTACCGGTTCGTCTCGCTCTCCGCCGTCACCGCCGGCGTCAAAGACGTGAGGGAAGCCATCGACGAGGCCCGGAAGAGGAAGAAGCTGAACGGCCAGAGGACCGTTCTCTTCATCGACGAGGTTCACAGGTTCAACAAATCGCAGCAGGACTCTTTCTTGCCGGTGATCGAAGACGGCAGCATAGTCTTCATGGGCGCCACCACTGAGAACCCTTCGTTCCATTTGATCACGCCGCTCTTGTCTCGGTCTCGAGTTCTTGATCTTCGACCCTTGAGCCCACAATATATAGAGGTTCTTCTCCGGCGAGCGGCGGAAAACTCCGATATCGGATTGGCTCGGAGCGTGGGGATGCAAGTGGATGTGGAGGAGGAAGTCATTTGTTTTATCTCTGCTAATTGCGACGGAGATGCTAGAGTGGCACTCAATGCATTGGAAATCTCAGCTACAACAGCAGCTGCCCGAGCCTCGACGCCGGATTCAGTAGCTGGTGTTACCGTGGAGGATGCCAAGGAAGCACTGCAATGCAAGCATGTGGCTTCGGACAAAGCAGGGGAAGAGCACTACAACCTCATCAGTGCGCTTCACAAGTCTATGAGAGGAAGTGATGCCAATGCTGCTATTTATTGGCTGGCAAGGATGCTTGAGGGAGGGCAGGAGCCTCTGTACATTGCGCGCCGGCTCGTAAGGTTTGCCAGCGAAGATGTGGGGCTGGCGGACCCATTGGCGCTTAATCAAGCTGTGGCTTGTTACCAAGCTTGTCACTTTATTGGAATGCCAGAGTGCAATGTGATTCTTGCACAGTGTGTGGCTTACTTGGCTTTGGCTCCAAAGTCGATTGCTGTTTATAAAGCAATGAATAGTGCAGCAGAAGTGGTGAGGAGTTCAGTTGGACAGAATGAGGGGGTGCCTCTTCATCTCAGGAATGCACCGACTAAGCTGATGAAGGATTTTGGGTATGGGAAAGGATATATATACACTCCTGACAATCCCTCTGCAGAACAGAGATTTCTACCGCCATCACTTGAAGGTTACAAGTTTCTGGATTGGCCAATCAGTAATAACACTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

538

Amino Acids

58.45

Weight (kDa)

6.25

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	3 - 38	3.1e-08	UBA-like domain
RuvB_N	PF05496	120 - 243	1.5e-09	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	154 - 265	2.9e-17	ATPase family associated with various cellular activities (AAA)
AAA_assoc_2	PF16193	299 - 380	9.2e-24	AAA C-terminal domain
MgsA_C	PF12002	381 - 527	2.9e-56	MgsA AAA+ ATPase C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24290
fragaria_vesca	FvH4_5g33930 FvH4_5g33930
malus_domestica	MD03G1299000.v1.1
pyrus_communis	pycom03g23710
rosa_chinensis	RchiOBHm_Chr7g0233321
rosa_laevigata	RLG00000001279
rosa_multiflora	Rmu_sc0000863.1_g000006 Rmu_sc0000863.1_g000007 Rmu_sc0000863.1_g000049 Rmu_sc0003865.1_g000005 Rmu_sc0010461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227410
rosa_rugosa	Rorug07G0279900 Rorug07G0279900
rosa_samantha	Rh7AG435800 Rh7BG408100 Rh7BG408500 Rh7CG455000 Rh7DG424500 Rh7DG424900
rosa_wichuraiana	Rw7G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1389
AatII	GACGTC	1 cut(s)	384
AccB1I	GGYRCC	3 cut(s)	479, 737, 1447
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccBSI	CCGCTC	4 cut(s)	83, 426, 778, 851
AccII	CGCG	3 cut(s)	62, 329, 1216
AcoI	YGGCCR	4 cut(s)	63, 388, 634, 1589
AcsI	RAATTY	1 cut(s)	196
AcyI	GRCGYC	4 cut(s)	381, 579, 738, 1013
AdeI	CACNNNGTG	1 cut(s)	1346
AfaI	GTAC	1 cut(s)	1208
AfiI	CCNNNNNNNGG	5 cut(s)	99, 482, 537, 618, 850
AgeI	ACCGGT	1 cut(s)	546
AgsI	TTSAA	2 cut(s)	676, 1568
AjiI	CACGTC	1 cut(s)	589
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	8 cut(s)	16, 628, 986, 998, 1028, 1280, 1298, 1480
AluI	AGCT	8 cut(s)	16, 628, 986, 998, 1028, 1280, 1298, 1480
Alw21I	GWGCWC	1 cut(s)	1104
Alw26I	GTCTC	4 cut(s)	452, 559, 789, 795
AlwNI	CAGNNNCTG	2 cut(s)	998, 1028
Ama87I	CYCGRG	2 cut(s)	792, 1002
AoxI	GGCC	9 cut(s)	63, 330, 362, 388, 469, 539, 609, 634, 1589
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	7 cut(s)	13, 685, 720, 995, 998, 1157, 1406
ApoI	RAATTY	1 cut(s)	196
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AsiGI	ACCGGT	1 cut(s)	546
AspLEI	GCGC	7 cut(s)	267, 357, 740, 1123, 1216, 1218, 1270
AspS9I	GGNCC	9 cut(s)	331, 363, 369, 469, 470, 540, 610, 642, 1258
AsuC2I	CCSGG	4 cut(s)	284, 477, 538, 613
AsuHPI	GGTGA	3 cut(s)	562, 718, 1429
AvaI	CYCGRG	2 cut(s)	792, 1002
AvaII	GGWCC	3 cut(s)	369, 642, 1258
BaeGI	GKGCMC	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	1591
BanI	GGYRCC	3 cut(s)	479, 737, 1447
BanII	GRGCYC	2 cut(s)	473, 821
BbsI	GAAGAC	3 cut(s)	454, 720, 721
Bbv12I	GWGCWC	1 cut(s)	1104
BbvI	GCAGC	7 cut(s)	25, 697, 732, 985, 1007, 1144, 1418
BccI	CCATC	6 cut(s)	152, 503, 515, 608, 1567, 1604
BceAI	ACGGC	3 cut(s)	551, 649, 733
BcgI	CGANNNNNNTGC	4 cut(s)	259, 293, 932, 966
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	768
BcnI	CCSGG	4 cut(s)	284, 477, 538, 613
BcoDI	GTCTC	4 cut(s)	452, 559, 789, 795
BfaI	CTAG	1 cut(s)	954
BfmI	CTRYAG	1 cut(s)	1536
BfoI	RGCGCY	3 cut(s)	268, 741, 1271
BglI	GCCNNNNNGGC	2 cut(s)	62, 477
Bme1390I	CCNGG	5 cut(s)	284, 367, 477, 538, 613
Bme18I	GGWCC	3 cut(s)	369, 642, 1258
BmeT110I	CYCGRG	2 cut(s)	792, 1002
BmgBI	CACGTC	1 cut(s)	589
BmgT120I	GGNCC	9 cut(s)	331, 363, 369, 469, 470, 540, 610, 642, 1258
BmiI	GGNNCC	9 cut(s)	371, 470, 471, 481, 739, 1200, 1260, 1368, 1449
BmrFI	CCNGG	5 cut(s)	284, 367, 477, 538, 613
BmsI	GCATC	5 cut(s)	882, 940, 1036, 1138, 1170
BpiI	GAAGAC	3 cut(s)	454, 720, 721
BplI	GAGNNNNNCTC	2 cut(s)	948, 980
BpuEI	CTTGAG	2 cut(s)	835, 1205
BpuMI	CCSGG	4 cut(s)	284, 477, 538, 613
BsaHI	GRCGYC	4 cut(s)	381, 579, 738, 1013
BsaI	GGTCTC	1 cut(s)	795
BsaJI	CCNNGG	4 cut(s)	327, 365, 1038, 1050
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	7 cut(s)	32, 124, 154, 506, 536, 1190, 1220
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 482, 537, 618, 850
Bse118I	RCCGGY	7 cut(s)	68, 316, 482, 546, 575, 703, 1218
Bse3DI	GCAATG	4 cut(s)	1070, 1209, 1333, 1401
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	4 cut(s)	327, 365, 1038, 1050
BseGI	GGATG	4 cut(s)	897, 907, 1051, 1185
BseLI	CCNNNNNNNGG	5 cut(s)	99, 482, 537, 618, 850
BseMI	GCAATG	4 cut(s)	1070, 1209, 1333, 1401
BseMII	CTCAG	3 cut(s)	738, 996, 1474
BsePI	GCGCGC	1 cut(s)	1214
BseRI	GAGGAG	5 cut(s)	392, 410, 514, 923, 1435
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	7 cut(s)	25, 697, 732, 985, 1007, 1144, 1418
BsgI	GTGCAG	1 cut(s)	1425
Bsh1236I	CGCG	3 cut(s)	62, 329, 1216
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	9 cut(s)	65, 332, 364, 390, 471, 541, 611, 636, 1591
BshNI	GGYRCC	3 cut(s)	479, 737, 1447
BshTI	ACCGGT	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiHKCI	CYCGRG	2 cut(s)	792, 1002
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	5 cut(s)	99, 482, 537, 618, 850
BsmAI	GTCTC	4 cut(s)	452, 559, 789, 795
BsmBI	CGTCTC	2 cut(s)	452, 559
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	2 cut(s)	1320, 1471
BsnI	GGCC	9 cut(s)	65, 332, 364, 390, 471, 541, 611, 636, 1591
Bso31I	GGTCTC	1 cut(s)	795
BsoBI	CYCGRG	2 cut(s)	792, 1002
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	3 cut(s)	473, 821, 1104
Bsp1407I	TGTACA	1 cut(s)	1206
Bsp143I	GATC	4 cut(s)	169, 708, 768, 802
BspANI	GGCC	9 cut(s)	65, 332, 364, 390, 471, 541, 611, 636, 1591
BspCNI	CTCAG	3 cut(s)	739, 995, 1473
BspFNI	CGCG	3 cut(s)	62, 329, 1216
BspLI	GGNNCC	9 cut(s)	371, 470, 471, 481, 739, 1200, 1260, 1368, 1449
BspMAI	CTGCAG	1 cut(s)	1540
BspQI	GCTCTTC	1 cut(s)	1092
BspT107I	GGYRCC	3 cut(s)	479, 737, 1447
BspTNI	GGTCTC	1 cut(s)	795
BsrBI	CCGCTC	4 cut(s)	83, 426, 778, 851
BsrDI	GCAATG	4 cut(s)	1070, 1209, 1333, 1401
BsrFI	RCCGGY	7 cut(s)	68, 316, 482, 546, 575, 703, 1218
BsrGI	TGTACA	1 cut(s)	1206
BssAI	RCCGGY	7 cut(s)	68, 316, 482, 546, 575, 703, 1218
BssECI	CCNNGG	4 cut(s)	327, 365, 1038, 1050
BssHII	GCGCGC	1 cut(s)	1214
BssMI	GATC	4 cut(s)	169, 708, 768, 802
BssNI	GRCGYC	4 cut(s)	381, 579, 738, 1013
BssT1I	CCWWGG	1 cut(s)	1050
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	4 cut(s)	237, 646, 1039, 1344
Bst6I	CTCTTC	4 cut(s)	611, 656, 1092, 1458
BstACI	GRCGYC	4 cut(s)	381, 579, 738, 1013
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstAUI	TGTACA	1 cut(s)	1206
BstDEI	CTNAG	4 cut(s)	747, 982, 1460, 1476
BstDSI	CCRYGG	2 cut(s)	327, 1038
BstF5I	GGATG	4 cut(s)	897, 907, 1051, 1185
BstFNI	CGCG	3 cut(s)	62, 329, 1216
BstH2I	RGCGCY	3 cut(s)	268, 741, 1271
BstHHI	GCGC	7 cut(s)	267, 357, 740, 1123, 1216, 1218, 1270
BstKTI	GATC	4 cut(s)	172, 711, 771, 805
BstMAI	GTCTC	4 cut(s)	452, 559, 789, 795
BstMBI	GATC	4 cut(s)	169, 708, 768, 802
BstMCI	CGRYCG	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	367
BstNSI	RCATGY	2 cut(s)	361, 1076
BstSCI	CCNGG	5 cut(s)	282, 365, 475, 536, 611
BstSFI	CTRYAG	1 cut(s)	1536
BstSLI	GKGCMC	1 cut(s)	473
BstUI	CGCG	3 cut(s)	62, 329, 1216
BstV1I	GCAGC	7 cut(s)	25, 697, 732, 985, 1007, 1144, 1418
BstV2I	GAAGAC	3 cut(s)	454, 720, 721
BsuRI	GGCC	9 cut(s)	65, 332, 364, 390, 471, 541, 611, 636, 1591
BtgI	CCRYGG	2 cut(s)	327, 1038
BtgZI	GCGATG	2 cut(s)	130, 481
BtrI	CACGTC	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	897, 907, 1051, 1185
BtsI	GCAGTG	1 cut(s)	1058
BtsIMutI	CAGTG	5 cut(s)	744, 1058, 1123, 1349, 1605
CaiI	CAGNNNCTG	2 cut(s)	998, 1028
CfoI	GCGC	7 cut(s)	267, 357, 740, 1123, 1216, 1218, 1270
Cfr10I	RCCGGY	7 cut(s)	68, 316, 482, 546, 575, 703, 1218
Cfr13I	GGNCC	9 cut(s)	331, 363, 369, 469, 470, 540, 610, 642, 1258
Cfr42I	CCGCGG	1 cut(s)	330
CseI	GACGC	3 cut(s)	434, 568, 1021
Csp6I	GTAC	1 cut(s)	1207
CspAI	ACCGGT	1 cut(s)	546
CviAII	CATG	4 cut(s)	25, 358, 733, 1073
CviQI	GTAC	1 cut(s)	1207
DdeI	CTNAG	4 cut(s)	747, 982, 1460, 1476
DinI	GGCGCC	1 cut(s)	739
DpnI	GATC	4 cut(s)	171, 710, 770, 804
DpnII	GATC	4 cut(s)	169, 708, 768, 802
DraIII	CACNNNGTG	1 cut(s)	1346
EaeI	YGGCCR	4 cut(s)	63, 388, 634, 1589
Eam1104I	CTCTTC	4 cut(s)	611, 656, 1092, 1458
EarI	CTCTTC	4 cut(s)	611, 656, 1092, 1458
EciI	GGCGGA	4 cut(s)	508, 553, 869, 1271
Eco130I	CCWWGG	1 cut(s)	1050
Eco24I	GRGCYC	2 cut(s)	473, 821
Eco31I	GGTCTC	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	868
Eco47I	GGWCC	3 cut(s)	369, 642, 1258
Eco88I	CYCGRG	2 cut(s)	792, 1002
EcoO109I	RGGNCCY	2 cut(s)	369, 469
EcoRII	CCWGG	1 cut(s)	365
EcoRV	GATATC	1 cut(s)	868
EcoT14I	CCWWGG	1 cut(s)	1050
EcoT22I	ATGCAT	1 cut(s)	973
EcoT38I	GRGCYC	2 cut(s)	473, 821
EgeI	GGCGCC	1 cut(s)	739
EheI	GGCGCC	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	1050
Esp3I	CGTCTC	2 cut(s)	452, 559
FaeI	CATG	4 cut(s)	28, 361, 736, 1076
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	4 cut(s)	24, 357, 732, 1072
FauI	CCCGC	2 cut(s)	300, 538
FbaI	TGATCA	1 cut(s)	768
FokI	GGATG	4 cut(s)	904, 914, 1058, 1192
FriOI	GRGCYC	2 cut(s)	473, 821
FspBI	CTAG	1 cut(s)	954
GlaI	GCGC	7 cut(s)	266, 356, 739, 1122, 1215, 1217, 1269
HaeII	RGCGCY	3 cut(s)	268, 741, 1271
HaeIII	GGCC	9 cut(s)	65, 332, 364, 390, 471, 541, 611, 636, 1591
HgaI	GACGC	3 cut(s)	434, 568, 1021
HhaI	GCGC	7 cut(s)	267, 357, 740, 1123, 1216, 1218, 1270
Hin1I	GRCGYC	4 cut(s)	381, 579, 738, 1013
Hin1II	CATG	4 cut(s)	28, 361, 736, 1076
Hin6I	GCGC	7 cut(s)	265, 355, 738, 1121, 1214, 1216, 1268
HinP1I	GCGC	7 cut(s)	265, 355, 738, 1121, 1214, 1216, 1268
HindIII	AAGCTT	1 cut(s)	1296
HinfI	GANTC	5 cut(s)	103, 413, 692, 1019, 1333
HphI	GGTGA	3 cut(s)	562, 718, 1429
Hpy166II	GTNNAC	2 cut(s)	240, 667
Hpy188I	TCNGA	6 cut(s)	310, 352, 865, 872, 882, 1084
Hpy188III	TCNNGA	5 cut(s)	792, 800, 1462, 1523, 1583
Hpy8I	GTNNAC	2 cut(s)	240, 667
Hpy99I	CGWCG	7 cut(s)	383, 386, 389, 608, 662, 947, 1015
HpyAV	CCTTC	4 cut(s)	462, 765, 1480, 1562
HpyCH4III	ACNGT	4 cut(s)	237, 646, 1039, 1344
HpyCH4IV	ACGT	2 cut(s)	381, 588
HpyCH4V	TGCA	9 cut(s)	895, 971, 1063, 1068, 1326, 1340, 1406, 1469, 1538
HpyF3I	CTNAG	4 cut(s)	747, 982, 1460, 1476
HpySE526I	ACGT	2 cut(s)	381, 588
Hsp92I	GRCGYC	4 cut(s)	381, 579, 738, 1013
Hsp92II	CATG	4 cut(s)	28, 361, 736, 1076
HspAI	GCGC	7 cut(s)	265, 355, 738, 1121, 1214, 1216, 1268
KasI	GGCGCC	1 cut(s)	737
KroI	GCCGGC	2 cut(s)	575, 1218
KroNI	GCCGGC	2 cut(s)	577, 1220
Ksp22I	TGATCA	1 cut(s)	768
KspI	CCGCGG	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	169, 708, 768, 802
LguI	GCTCTTC	1 cut(s)	1092
LmnI	GCTCC	6 cut(s)	10, 352, 431, 882, 1198, 1372
Lsp1109I	GCAGC	7 cut(s)	25, 697, 732, 985, 1007, 1144, 1418
LweI	GCATC	5 cut(s)	882, 940, 1036, 1138, 1170
MaeI	CTAG	1 cut(s)	954
MaeII	ACGT	2 cut(s)	381, 588
MaeIII	GTNAC	5 cut(s)	568, 1033, 1289, 1301, 1571
MalI	GATC	4 cut(s)	171, 710, 770, 804
MbiI	CCGCTC	4 cut(s)	83, 426, 778, 851
MboI	GATC	4 cut(s)	169, 708, 768, 802
MhlI	GDGCHC	3 cut(s)	473, 821, 1104
MlsI	TGGCCA	1 cut(s)	1591
MluCI	AATT	3 cut(s)	115, 196, 937
MluNI	TGGCCA	1 cut(s)	1591
Mly113I	GGCGCC	1 cut(s)	738
MlyI	GAGTC	2 cut(s)	407, 686
MmeI	TCCRAC	2 cut(s)	330, 1411
Mox20I	TGGCCA	1 cut(s)	1591
Mph1103I	ATGCAT	1 cut(s)	973
MreI	CGCCGGCG	1 cut(s)	575
MroNI	GCCGGC	2 cut(s)	575, 1218
MscI	TGGCCA	1 cut(s)	1591
MseI	TTAA	2 cut(s)	20, 1272
MslI	CAYNNNNRTG	1 cut(s)	1063
Msp20I	TGGCCA	1 cut(s)	1591
MspA1I	CMGCKG	3 cut(s)	16, 329, 998
MspR9I	CCNGG	5 cut(s)	284, 367, 477, 538, 613
Mva1269I	GAATGC	2 cut(s)	1320, 1471
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	3 cut(s)	62, 329, 1216
NaeI	GCCGGC	2 cut(s)	577, 1220
NarI	GGCGCC	1 cut(s)	738
NciI	CCSGG	4 cut(s)	284, 477, 538, 613
NdeII	GATC	4 cut(s)	169, 708, 768, 802
NgoMIV	GCCGGC	2 cut(s)	575, 1218
NlaIII	CATG	4 cut(s)	28, 361, 736, 1076
NlaIV	GGNNCC	9 cut(s)	371, 470, 471, 481, 739, 1200, 1260, 1368, 1449
NmuCI	GTSAC	2 cut(s)	568, 1301
NsiI	ATGCAT	1 cut(s)	973
NspI	RCATGY	2 cut(s)	361, 1076
PaeI	GCATGC	1 cut(s)	361
PaeR7I	CTCGAG	1 cut(s)	792
PauI	GCGCGC	1 cut(s)	1214
PciSI	GCTCTTC	1 cut(s)	1092
PctI	GAATGC	2 cut(s)	1320, 1471
PdiI	GCCGGC	2 cut(s)	577, 1220
PfeI	GAWTC	3 cut(s)	103, 1019, 1333
PflFI	GACNNNGTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	282
PinAI	ACCGGT	1 cut(s)	546
Ple19I	CGATCG	1 cut(s)	172
PleI	GAGTC	2 cut(s)	407, 686
PluTI	GGCGCC	1 cut(s)	741
PpsI	GAGTC	2 cut(s)	407, 686
PpuMI	RGGWCCY	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	1389
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	9 cut(s)	371, 470, 471, 481, 739, 1200, 1260, 1368, 1449
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	9 cut(s)	331, 363, 369, 469, 470, 540, 610, 642, 1258
PspPPI	RGGWCCY	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	1540
PstNI	CAGNNNCTG	2 cut(s)	998, 1028
PsyI	GACNNNGTC	1 cut(s)	383
PteI	GCGCGC	1 cut(s)	1214
PvuI	CGATCG	1 cut(s)	172
PvuII	CAGCTG	2 cut(s)	16, 998
RsaI	GTAC	1 cut(s)	1208
RsaNI	GTAC	1 cut(s)	1207
RseI	CAYNNNNRTG	1 cut(s)	1063
SacII	CCGCGG	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	1092
SaqAI	TTAA	2 cut(s)	20, 1272
Sau3AI	GATC	4 cut(s)	169, 708, 768, 802
Sau96I	GGNCC	9 cut(s)	331, 363, 369, 469, 470, 540, 610, 642, 1258
SchI	GAGTC	2 cut(s)	407, 686
ScrFI	CCNGG	5 cut(s)	284, 367, 477, 538, 613
SduI	GDGCHC	3 cut(s)	473, 821, 1104
SfaNI	GCATC	5 cut(s)	882, 940, 1036, 1138, 1170
SfcI	CTRYAG	1 cut(s)	1536
SfoI	GGCGCC	1 cut(s)	739
Sfr274I	CTCGAG	1 cut(s)	792
Sfr303I	CCGCGG	1 cut(s)	330
SgrAI	CRCCGGYG	2 cut(s)	68, 575
SgrBI	CCGCGG	1 cut(s)	330
SinI	GGWCC	3 cut(s)	369, 642, 1258
SlaI	CTCGAG	1 cut(s)	792
SmiMI	CAYNNNNRTG	1 cut(s)	1063
SmlI	CTYRAG	3 cut(s)	792, 814, 1184
SmoI	CTYRAG	3 cut(s)	792, 814, 1184
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	3 cut(s)	115, 196, 937
SspDI	GGCGCC	1 cut(s)	737
SspMI	CTAG	1 cut(s)	954
StyD4I	CCNGG	5 cut(s)	282, 365, 475, 536, 611
StyI	CCWWGG	1 cut(s)	1050
TaaI	ACNGT	4 cut(s)	237, 646, 1039, 1344
TaiI	ACGT	2 cut(s)	384, 591
TaqI	TCGA	8 cut(s)	168, 603, 657, 711, 793, 808, 1010, 1376
TaqII	GACCGA	1 cut(s)	777
TasI	AATT	3 cut(s)	115, 196, 937
TatI	WGTACW	1 cut(s)	1206
TfiI	GAWTC	3 cut(s)	103, 1019, 1333
Tru1I	TTAA	2 cut(s)	20, 1272
Tru9I	TTAA	2 cut(s)	20, 1272
TscAI	CASTG	5 cut(s)	751, 1065, 1123, 1349, 1612
TseFI	GTSAC	2 cut(s)	568, 1301
TseI	GCWGC	7 cut(s)	13, 685, 720, 995, 998, 1157, 1406
Tsp45I	GTSAC	2 cut(s)	568, 1301
TspDTI	ATGAA	5 cut(s)	643, 721, 1412, 1445, 1499
TspGWI	ACGGA	1 cut(s)	960
TspRI	CASTG	5 cut(s)	751, 1065, 1123, 1349, 1612
Tth111I	GACNNNGTC	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	3 cut(s)	369, 642, 1258
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	2 cut(s)	361, 1076
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1243
XhoI	CTCGAG	1 cut(s)	792
XspI	CTAG	1 cut(s)	954
ZraI	GACGTC	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.