RLG00000000861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017017
Physical Location & Seq
Reverse (-)
6945042 .. 6945869
828 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000861

Sequence Viewer

Length: 336 bp
ATGGACGGACACCGCTGGGGACTCCATCTCGTCGGAGTTCTCCAAGCACAGCTTGCTCGACAGCTTTGCTTCTCTGAATTTATTGCAGGCCGGAGCGGTGTAGACGTACTTAGTGGGAGCATCGAACGAGGTACTCTGGCAAGGCAATCGGCAGCGGTCGAGGCTGGTGAGGAACAATCTGAGGGTTTTACAGCGGCGGAGGTGGATGACGGGGCTAGCGGATGGGCTGCGCGTGGGGCGTCAGGCGACGACGGGGCATTAAGTGGCGAGGAGCTTGAATTTTTGCAGAGTAGCCATATCGATCTAGCTGAGTTCAATGTGATTGTAGTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.65

Weight (kDa)

4.4

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 232
AciI CCGC 6 cut(s) 13, 96, 155, 194, 197, 219
AcsI RAATTY 2 cut(s) 77, 278
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 2 cut(s) 108, 133
AgsI TTSAA 2 cut(s) 278, 316
AluBI AGCT 4 cut(s) 52, 64, 274, 308
AluI AGCT 4 cut(s) 52, 64, 274, 308
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 152, 227
ApoI RAATTY 2 cut(s) 77, 278
AspLEI GCGC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 164, 214
BccI CCATC 2 cut(s) 33, 216
BcgI CGANNNNNNTGC 4 cut(s) 48, 82, 129, 163
BfaI CTAG 2 cut(s) 216, 305
BisI GCNGC 3 cut(s) 153, 195, 228
BlsI GCNGC 3 cut(s) 154, 196, 229
BmsI GCATC 1 cut(s) 129
BmtI GCTAGC 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 300
BseGI GGATG 2 cut(s) 211, 227
BseMII CTCAG 2 cut(s) 171, 300
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 164, 214
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 90
BshVI ATCGAT 1 cut(s) 300
BsiEI CGRYCG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 6 cut(s) 13, 96, 155, 194, 197, 219
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 172, 301
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 219
BsrBI CCGCTC 1 cut(s) 96
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 54, 88, 217
BstDEI CTNAG 3 cut(s) 110, 180, 309
BstF5I GGATG 2 cut(s) 211, 227
BstFNI CGCG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 3 cut(s) 53, 161, 236
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 164, 214
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 2 cut(s) 211, 227
Cac8I GCNNGC 3 cut(s) 54, 88, 217
CfoI GCGC 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 107, 132
CviJI RGCY 9 cut(s) 52, 64, 90, 164, 215, 227, 274, 294, 308
CviKI_1 RGCY 9 cut(s) 52, 64, 90, 164, 215, 227, 274, 294, 308
CviQI GTAC 2 cut(s) 107, 132
DdeI CTNAG 3 cut(s) 110, 180, 309
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EciI GGCGGA 1 cut(s) 212
FaiI YATR 1 cut(s) 297
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FaqI GGGAC 1 cut(s) 33
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 153, 195, 228
FokI GGATG 2 cut(s) 218, 234
Fsp4HI GCNGC 3 cut(s) 153, 195, 228
FspBI CTAG 2 cut(s) 216, 305
GlaI GCGC 1 cut(s) 231
GluI GCNGC 3 cut(s) 153, 195, 228
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 91
HgaI GACGC 1 cut(s) 228
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 239
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 1 cut(s) 21
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 35, 76, 181
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 3 cut(s) 35, 251, 254
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 86, 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 161, 236
HpyF3I CTNAG 3 cut(s) 110, 180, 309
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 239
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 3 cut(s) 93, 117, 271
LpnPI CCDG 6 cut(s) 72, 104, 122, 150, 228, 316
Lsp1109I GCAGC 2 cut(s) 164, 214
LweI GCATC 1 cut(s) 129
MaeI CTAG 2 cut(s) 216, 305
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 303
MbiI CCGCTC 1 cut(s) 96
MboI GATC 1 cut(s) 301
MluCI AATT 2 cut(s) 77, 278
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 122, 154, 163, 175, 193, 262
MseI TTAA 1 cut(s) 260
MspA1I CMGCKG 3 cut(s) 15, 155, 194
MspI CCGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 53, 161, 236
NdeII GATC 1 cut(s) 301
NheI GCTAGC 1 cut(s) 215
PkrI GCNGC 3 cut(s) 154, 196, 229
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 15
RsaI GTAC 2 cut(s) 108, 133
RsaNI GTAC 2 cut(s) 107, 132
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 3 cut(s) 153, 195, 228
Sau3AI GATC 1 cut(s) 301
SchI GAGTC 1 cut(s) 15
SetI ASST 8 cut(s) 54, 66, 108, 133, 204, 276, 310, 335
SfaNI GCATC 1 cut(s) 129
Sse9I AATT 2 cut(s) 77, 278
SsiI CCGC 6 cut(s) 13, 96, 155, 194, 197, 219
SspMI CTAG 2 cut(s) 216, 305
TaiI ACGT 1 cut(s) 108
TaqI TCGA 4 cut(s) 58, 123, 159, 300
TasI AATT 2 cut(s) 77, 278
TauI GCSGC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 2 cut(s) 152, 227
TspGWI ACGGA 1 cut(s) 21
XapI RAATTY 2 cut(s) 77, 278
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 2 cut(s) 216, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.