RLG00000025499

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017017
Physical Location & Seq
Forward (+)
46176307 .. 46177128
822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025499

Sequence Viewer

Length: 387 bp
ATGGACAGACACCGCCATGGACTCCATCTTGTCGAAGTTCTCCAAGCACAACTTGCTCGATGGCTTTGCCTCTCTGAATTTATTGCAGGCCGGAGCGCTTCTAATCAATTTGTCCAAAAAAGAACCGGCCTTTGGTTATTTGCGGCTGTAATATCAGTACTTAGTGGGAGCACCAGACGAGGTACTCCGGCGAGGCAATCGGCGGCGGTTGGGGCGGGTGAGGAACAATCTGAGGGCTTTACGGCAGCGGAGGTGGATGACGGGGCTGGCGGATGGGCTGTGCGTGGGGCTTCAGGCGATGACGGGGCATTGAGTGGCGAGGAGCTTGAATTTTTGCAAGGTAGCCATATCGATCTAGCTGAGTTCCATGTGGTTGTAGTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.64

Weight (kDa)

5.45

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 13, 143, 203, 206, 215, 248, 270
AcsI RAATTY 2 cut(s) 77, 329
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 2 cut(s) 159, 184
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 329
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
AluBI AGCT 2 cut(s) 325, 359
AluI AGCT 2 cut(s) 325, 359
Alw21I GWGCWC 1 cut(s) 173
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 2 cut(s) 88, 127
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 2 cut(s) 77, 329
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 257
BccI CCATC 3 cut(s) 33, 54, 267
BceAI ACGGC 1 cut(s) 258
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BfaI CTAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 3 cut(s) 144, 204, 246
BlsI GCNGC 3 cut(s) 145, 205, 247
BmcAI AGTACT 1 cut(s) 159
Bsa29I ATCGAT 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 2 cut(s) 262, 278
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 222, 351
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 257
BshFI GGCC 2 cut(s) 90, 129
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 3 cut(s) 91, 126, 188
BslI CCNNNNNNNGG 1 cut(s) 132
BsnI GGCC 2 cut(s) 90, 129
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 352
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 7 cut(s) 13, 143, 203, 206, 215, 248, 270
BspANI GGCC 2 cut(s) 90, 129
BspCNI CTCAG 2 cut(s) 223, 352
BspDI ATCGAT 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 88, 268
BstDEI CTNAG 3 cut(s) 161, 231, 360
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 262, 278
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 2 cut(s) 53, 212
BstV1I GCAGC 1 cut(s) 257
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 2 cut(s) 90, 129
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 262, 278
Cac8I GCNNGC 2 cut(s) 88, 268
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 2 cut(s) 158, 183
CviAII CATG 2 cut(s) 17, 368
CviQI GTAC 2 cut(s) 158, 183
DdeI CTNAG 3 cut(s) 161, 231, 360
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EciI GGCGGA 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 16
Eco47III AGCGCT 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 2 cut(s) 20, 371
FaiI YATR 3 cut(s) 18, 348, 369
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 2 cut(s) 16, 367
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 144, 204, 246
FokI GGATG 2 cut(s) 269, 285
Fsp4HI GCNGC 3 cut(s) 144, 204, 246
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 97
GluI GCNGC 3 cut(s) 144, 204, 246
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 2 cut(s) 90, 129
HapII CCGG 3 cut(s) 91, 126, 188
HhaI GCGC 1 cut(s) 98
Hin1II CATG 2 cut(s) 20, 371
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 21
HpaII CCGG 3 cut(s) 91, 126, 188
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 76, 232
HpyCH4V TGCA 2 cut(s) 86, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 212
HpyF3I CTNAG 3 cut(s) 161, 231, 360
Hsp92II CATG 2 cut(s) 20, 371
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 3 cut(s) 93, 168, 322
LpnPI CCDG 8 cut(s) 72, 104, 139, 187, 201, 252, 279, 367
Lsp1109I GCAGC 1 cut(s) 257
MaeI CTAG 1 cut(s) 356
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 3 cut(s) 77, 107, 329
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 7 cut(s) 80, 173, 186, 214, 226, 244, 313
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 3 cut(s) 91, 126, 188
MwoI GCNNNNNNNGC 2 cut(s) 53, 212
NcoI CCATGG 1 cut(s) 16
NdeII GATC 1 cut(s) 352
NlaIII CATG 2 cut(s) 20, 371
PkrI GCNGC 3 cut(s) 145, 205, 247
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
RsaI GTAC 2 cut(s) 159, 184
RsaNI GTAC 2 cut(s) 158, 183
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 3 cut(s) 144, 204, 246
Sau3AI GATC 1 cut(s) 352
ScaI AGTACT 1 cut(s) 159
SchI GAGTC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 173
SetI ASST 6 cut(s) 184, 255, 327, 343, 361, 386
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 3 cut(s) 77, 107, 329
SsiI CCGC 7 cut(s) 13, 143, 203, 206, 215, 248, 270
SspMI CTAG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 16
TaqI TCGA 3 cut(s) 33, 58, 351
TasI AATT 3 cut(s) 77, 107, 329
TatI WGTACW 1 cut(s) 157
TauI GCSGC 2 cut(s) 146, 206
TseI GCWGC 1 cut(s) 245
XapI RAATTY 2 cut(s) 77, 329
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.