RLG00000001824
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017017
Physical Location & Seq
Forward (+)
21320453 .. 21326782
6330 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001824

Sequence Viewer

Length: 1053 bp
ATGGAAGGATTGCCAGTGGGTTACCGGTTCCACGCCACCAACGACGAGCTGGTAGGTTACTTTTTGCGCAACAGAGCTTCCATGGGTTCCGAATTCTGGCTGAGTTTGATCGCCGAATGTCCTGATTTCTATGGAAAGATAGAGCTTTGGGTCATCTGGGAGCACTACGGTGGGGAGGATGGAGAAGCCCTTCACTCGTTTGCCAAAAGGCACAAACTTCACGATAACAGCAATGCTAAACGCTTCGATAGGAAGGTCGGCTCTGGCACATGGAACGCTCAATACTCCAAAGAGGTTGTCCAGGATTGTGTTGTTACTGGGCTTAAACGCGAGTTTCACTACGAAGGCGGATCCGATTCTAACCAAAACAATTTCCTGAAGAAAAAGCACACTAGTAGTACTCTTGATGATGATCAGAACAAAACCAAAAGGTTGAGAATTGAACAACCTGCTGCAACCACCAATAGTGAAATTATGGTTCTGAATTGTTCTAATTCTGATTATGATGACAATGCAGAGTTCACATGGTGGCTACAGGCGGTTTTGGTTGAGGAAACCAGCATCAGCTCTATAGATGATGTCACCCTCAATGCCACATTGGGTGAGAGTCTTGGAGGAACTGCATCTGGTTTGGGCGATTCTTGTGTGGATCAACAGGATATCTCTTCTAATCAATTTGTCCAAAAAAGAACCGGCATTTGGTTATTCGCGGCTGTAATATCAGTACTTAGTGGGAGCATCGGACGAGGTACTCCGGCGAGGCAATCAGCGGTGGTCGGGGCGGGTGAGGAACAATCTGAAGGTTTTACGGCGGCGGAGGTGGATGACAGGGCTGGCGGATGGGCTGCGCGTGGGGCTTCAGGCGACGACTGGGCATTGAGTGGAGAGGAGCTTGAATTTTTGCAAGGTAGCCATATCGATCTAGCTGAGTTCAATGTGGTTGTAGTTAGGGACGATGCAGAGACTACCATGATGGACAGTGGCACTGTGCTACCGCTATGGGACGACGCAGTCATCACCAAGCTGAGCATGACTGAACCTGGTTATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

351

Amino Acids

38.49

Weight (kDa)

4.57

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 125 5.2e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1010
Acc16I TGCGCA 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 457
AccII CGCG 3 cut(s) 330, 710, 850
AciI CCGC 9 cut(s) 348, 539, 710, 770, 782, 812, 815, 837, 995
AclWI GGATC 3 cut(s) 345, 358, 657
AcsI RAATTY 2 cut(s) 92, 896
AcuI CTGAAG 3 cut(s) 398, 819, 843
AdeI CACNNNGTG 1 cut(s) 528
AfaI GTAC 3 cut(s) 400, 726, 751
AfiI CCNNNNNNNGG 2 cut(s) 96, 699
AgeI ACCGGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 443, 896, 934
AhlI ACTAGT 1 cut(s) 392
AjnI CCWGG 2 cut(s) 300, 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 7 cut(s) 49, 77, 145, 567, 892, 926, 1024
AluI AGCT 7 cut(s) 49, 77, 145, 567, 892, 926, 1024
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 956
AlwI GGATC 3 cut(s) 345, 358, 657
ApeKI GCWGC 2 cut(s) 452, 845
ApoI RAATTY 2 cut(s) 92, 896
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AsiGI ACCGGT 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 2 cut(s) 69, 850
AsuHPI GGTGA 4 cut(s) 574, 614, 797, 1009
BamHI GGATCC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 439, 832
BccI CCATC 3 cut(s) 173, 834, 967
BceAI ACGGC 1 cut(s) 825
BciT130I CCWGG 2 cut(s) 302, 1041
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 956
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 2 cut(s) 393, 923
BfmI CTRYAG 2 cut(s) 533, 570
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 4 cut(s) 453, 711, 813, 846
BlpI GCTNAGC 1 cut(s) 1025
BlsI GCNGC 4 cut(s) 454, 712, 814, 847
BmcAI AGTACT 2 cut(s) 400, 726
Bme1390I CCNGG 2 cut(s) 302, 1041
BmiI GGNNCC 3 cut(s) 29, 88, 352
BmrFI CCNGG 2 cut(s) 302, 1041
BmrI ACTGGG 2 cut(s) 327, 880
BmsI GCATC 4 cut(s) 570, 632, 747, 946
BmuI ACTGGG 2 cut(s) 327, 880
Bpu1102I GCTNAGC 1 cut(s) 1025
Bsa29I ATCGAT 1 cut(s) 918
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 699
Bse118I RCCGGY 2 cut(s) 24, 692
Bse1I ACTGG 3 cut(s) 14, 322, 875
Bse3DI GCAATG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 2 cut(s) 302, 1041
BseCI ATCGAT 1 cut(s) 918
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 3 cut(s) 184, 829, 845
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 96, 699
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 92, 918, 1016
BseNI ACTGG 3 cut(s) 14, 322, 875
BseRI GAGGAG 1 cut(s) 902
BseXI GCAGC 2 cut(s) 439, 832
Bsh1236I CGCG 3 cut(s) 330, 710, 850
BshTI ACCGGT 1 cut(s) 24
BshVI ATCGAT 1 cut(s) 918
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 25, 693, 755
BslFI GGGAC 2 cut(s) 965, 1016
BslI CCNNNNNNNGG 2 cut(s) 96, 699
BsmAI GTCTC 1 cut(s) 956
BsmFI GGGAC 2 cut(s) 965, 1016
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 5 cut(s) 108, 350, 412, 649, 919
Bsp1720I GCTNAGC 1 cut(s) 1025
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 9 cut(s) 348, 539, 710, 770, 782, 812, 815, 837, 995
BspCNI CTCAG 3 cut(s) 93, 919, 1017
BspDI ATCGAT 1 cut(s) 918
BspFNI CGCG 3 cut(s) 330, 710, 850
BspLI GGNNCC 3 cut(s) 29, 88, 352
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 3 cut(s) 345, 358, 657
BsrDI GCAATG 1 cut(s) 238
BsrFI RCCGGY 2 cut(s) 24, 692
BsrI ACTGG 3 cut(s) 14, 322, 875
BssAI RCCGGY 2 cut(s) 24, 692
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 5 cut(s) 108, 350, 412, 649, 919
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 302, 1041
Bst4CI ACNGT 3 cut(s) 170, 980, 988
Bst6I CTCTTC 1 cut(s) 670
BstC8I GCNNGC 1 cut(s) 835
BstDEI CTNAG 4 cut(s) 101, 728, 927, 1025
BstDSI CCRYGG 1 cut(s) 81
BstEII GGTNACC 1 cut(s) 20
BstF5I GGATG 3 cut(s) 184, 829, 845
BstFNI CGCG 3 cut(s) 330, 710, 850
BstHHI GCGC 2 cut(s) 69, 850
BstKTI GATC 5 cut(s) 111, 353, 415, 652, 922
BstMAI GTCTC 1 cut(s) 956
BstMBI GATC 5 cut(s) 108, 350, 412, 649, 919
BstMWI GCNNNNNNNGC 1 cut(s) 854
BstNI CCWGG 2 cut(s) 302, 1041
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 300, 1039
BstSFI CTRYAG 2 cut(s) 533, 570
BstUI CGCG 3 cut(s) 330, 710, 850
BstV1I GCAGC 2 cut(s) 439, 832
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 918
BsuTUI ATCGAT 1 cut(s) 918
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 3 cut(s) 184, 829, 845
BtsIMutI CAGTG 3 cut(s) 21, 984, 985
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 835
CfoI GCGC 2 cut(s) 69, 850
Cfr10I RCCGGY 2 cut(s) 24, 692
ClaI ATCGAT 1 cut(s) 918
CseI GACGC 1 cut(s) 1016
CsiI ACCWGGT 1 cut(s) 1039
Csp6I GTAC 3 cut(s) 399, 725, 750
CspAI ACCGGT 1 cut(s) 24
CviAII CATG 5 cut(s) 82, 270, 525, 970, 1030
CviQI GTAC 3 cut(s) 399, 725, 750
DdeI CTNAG 4 cut(s) 101, 728, 927, 1025
DpnI GATC 5 cut(s) 110, 352, 414, 651, 921
DpnII GATC 5 cut(s) 108, 350, 412, 649, 919
DraIII CACNNNGTG 1 cut(s) 528
DrdI GACNNNNNNGTC 1 cut(s) 1010
DseDI GACNNNNNNGTC 1 cut(s) 1010
Eam1104I CTCTTC 1 cut(s) 670
EarI CTCTTC 1 cut(s) 670
EciI GGCGGA 3 cut(s) 363, 830, 852
Eco130I CCWWGG 1 cut(s) 81
Eco32I GATATC 1 cut(s) 661
Eco57I CTGAAG 3 cut(s) 398, 819, 843
Eco91I GGTNACC 1 cut(s) 20
EcoO65I GGTNACC 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 300, 1039
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 5 cut(s) 85, 273, 528, 973, 1033
FaqI GGGAC 2 cut(s) 965, 1016
FatI CATG 5 cut(s) 81, 269, 524, 969, 1029
FauI CCCGC 1 cut(s) 775
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 453, 711, 813, 846
FokI GGATG 3 cut(s) 191, 836, 852
Fsp4HI GCNGC 4 cut(s) 453, 711, 813, 846
FspBI CTAG 2 cut(s) 393, 923
FspI TGCGCA 1 cut(s) 68
GlaI GCGC 2 cut(s) 68, 849
GluI GCNGC 4 cut(s) 453, 711, 813, 846
HapII CCGG 3 cut(s) 25, 693, 755
HgaI GACGC 1 cut(s) 1016
HhaI GCGC 2 cut(s) 69, 850
Hin1II CATG 5 cut(s) 85, 273, 528, 973, 1033
Hin6I GCGC 2 cut(s) 67, 848
HinP1I GCGC 2 cut(s) 67, 848
HinfI GANTC 3 cut(s) 356, 607, 638
HpaII CCGG 3 cut(s) 25, 693, 755
HphI GGTGA 4 cut(s) 574, 614, 797, 1009
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 7 cut(s) 91, 355, 417, 483, 499, 743, 799
Hpy188III TCNNGA 4 cut(s) 122, 221, 376, 404
Hpy8I GTNNAC 1 cut(s) 522
Hpy99I CGWCG 3 cut(s) 47, 869, 1010
HpyAV CCTTC 4 cut(s) 200, 247, 338, 794
HpyCH4III ACNGT 3 cut(s) 170, 980, 988
HpyCH4V TGCA 5 cut(s) 455, 515, 623, 904, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 854
HpyF3I CTNAG 4 cut(s) 101, 728, 927, 1025
Hsp92II CATG 5 cut(s) 85, 273, 528, 973, 1033
HspAI GCGC 2 cut(s) 67, 848
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 5 cut(s) 108, 350, 412, 649, 919
LmnI GCTCC 3 cut(s) 160, 735, 889
Lsp1109I GCAGC 2 cut(s) 439, 832
LweI GCATC 4 cut(s) 570, 632, 747, 946
MabI ACCWGGT 1 cut(s) 1039
MaeI CTAG 2 cut(s) 393, 923
MaeIII GTNAC 4 cut(s) 20, 56, 313, 580
MalI GATC 5 cut(s) 110, 352, 414, 651, 921
MboI GATC 5 cut(s) 108, 350, 412, 649, 919
MboII GAAGA 2 cut(s) 391, 657
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 8 cut(s) 92, 370, 438, 471, 484, 493, 674, 896
MlyI GAGTC 1 cut(s) 616
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 3 cut(s) 25, 693, 755
MspR9I CCNGG 2 cut(s) 302, 1041
MvaI CCWGG 2 cut(s) 302, 1041
MvnI CGCG 3 cut(s) 330, 710, 850
MwoI GCNNNNNNNGC 1 cut(s) 854
NcoI CCATGG 1 cut(s) 81
NdeII GATC 5 cut(s) 108, 350, 412, 649, 919
NlaIII CATG 5 cut(s) 85, 273, 528, 973, 1033
NlaIV GGNNCC 3 cut(s) 29, 88, 352
NmuCI GTSAC 1 cut(s) 580
NsbI TGCGCA 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 356, 638
PflFI GACNNNGTC 1 cut(s) 1010
PfoI TCCNGGA 1 cut(s) 300
PinAI ACCGGT 1 cut(s) 24
PkrI GCNGC 4 cut(s) 454, 712, 814, 847
PleI GAGTC 1 cut(s) 615
PpsI GAGTC 1 cut(s) 615
Psp6I CCWGG 2 cut(s) 300, 1039
PspEI GGTNACC 1 cut(s) 20
PspGI CCWGG 2 cut(s) 300, 1039
PspN4I GGNNCC 3 cut(s) 29, 88, 352
PsrI GAACNNNNNNTAC 2 cut(s) 266, 298
PsuI RGATCY 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 1010
RsaI GTAC 3 cut(s) 400, 726, 751
RsaNI GTAC 3 cut(s) 399, 725, 750
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 4 cut(s) 453, 711, 813, 846
Sau3AI GATC 5 cut(s) 108, 350, 412, 649, 919
ScaI AGTACT 2 cut(s) 400, 726
SchI GAGTC 1 cut(s) 616
ScrFI CCNGG 2 cut(s) 302, 1041
SduI GDGCHC 1 cut(s) 165
SexAI ACCWGGT 1 cut(s) 1039
SfaNI GCATC 4 cut(s) 570, 632, 747, 946
SfcI CTRYAG 2 cut(s) 533, 570
SmiMI CAYNNNNRTG 1 cut(s) 168
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 8 cut(s) 92, 370, 438, 471, 484, 493, 674, 896
SsiI CCGC 9 cut(s) 348, 539, 710, 770, 782, 812, 815, 837, 995
SspMI CTAG 2 cut(s) 393, 923
StyD4I CCNGG 2 cut(s) 300, 1039
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 3 cut(s) 170, 980, 988
TaqI TCGA 2 cut(s) 246, 918
TasI AATT 8 cut(s) 92, 370, 438, 471, 484, 493, 674, 896
TatI WGTACW 2 cut(s) 398, 724
TauI GCSGC 2 cut(s) 713, 815
TfiI GAWTC 2 cut(s) 356, 638
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 3 cut(s) 21, 985, 991
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 452, 845
Tsp45I GTSAC 1 cut(s) 580
TspRI CASTG 3 cut(s) 21, 985, 991
Tth111I GACNNNGTC 1 cut(s) 1010
XapI RAATTY 2 cut(s) 92, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 393, 923
ZrmI AGTACT 2 cut(s) 400, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.