RLG00000024623

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017017
Physical Location & Seq
Reverse (-)
37551893 .. 37556835
4943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024623

Sequence Viewer

Length: 480 bp
ATGGTGATGATGGGAGAAAACCCAAAACTAATTCATCGAACTGGGGCAATGATCATTTCACTGATTCCAGCTTCTAATCAATTTGTCCCAAAAAGAACCGGCCTTTGGTTATTTGCGGCTTTAATATCAGTATTTAGTGAGAGCATCGGACGAGGTACTCCGGCGAGGCAATCGGCCGCTGTCGAGGCAGGTGAGGAACAATCTGAGGGTTTTACGACGGCGGAGGTGGATGACGGGGCTGGCGGATGGGCTGCACGTGGGGCTTCAGGCAACGACAGGGCATTGAGTGGCGAGGAGCTTGAATTTTTGCAAGGTAGCCATATCGATCTAGCTGAGTTCAATGTGGTTGTAGTCAGGGAAGCTGATTATAATCTCCGACCTGACCTCGAGTCCCCGACGTCAGTCTCTGACCCCGTGTCTCCAAGCCGCCTCCCAGTCCGATCGATCGATCTGTTTACACTCTGGGCTACAAGACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.08

Weight (kDa)

4.71

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AarI CACCTGC 1 cut(s) 179
AatII GACGTC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 179
AciI CCGC 5 cut(s) 116, 177, 221, 243, 427
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 249
AcvI CACGTG 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 2 cut(s) 302, 340
AhdI GACNNNNNGTC 2 cut(s) 388, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 4 cut(s) 71, 298, 332, 362
AluI AGCT 4 cut(s) 71, 298, 332, 362
Alw26I GTCTC 2 cut(s) 409, 423
AlwNI CAGNNNCTG 1 cut(s) 407
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 2 cut(s) 100, 174
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 16, 203
AvaI CYCGRG 1 cut(s) 386
BbrPI CACGTG 1 cut(s) 257
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 4, 240
BceAI ACGGC 1 cut(s) 234
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 409, 423
BfaI CTAG 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 4 cut(s) 117, 177, 252, 427
BlsI GCNGC 4 cut(s) 118, 178, 253, 428
BmeRI GACNNNNNGTC 2 cut(s) 388, 415
BmeT110I CYCGRG 1 cut(s) 386
BmrI ACTGGG 2 cut(s) 51, 428
BmsI GCATC 1 cut(s) 153
BmuI ACTGGG 2 cut(s) 51, 428
BoxI GACNNNNGTC 1 cut(s) 401
Bsa29I ATCGAT 3 cut(s) 324, 443, 447
BsaAI YACGTR 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 46, 434
Bse3DI GCAATG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 369
BseCI ATCGAT 3 cut(s) 324, 443, 447
BseGI GGATG 2 cut(s) 235, 251
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 195, 324
BseNI ACTGG 2 cut(s) 46, 434
BseRI GAGGAG 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 237
Bsh1285I CGRYCG 3 cut(s) 177, 443, 447
BshFI GGCC 2 cut(s) 102, 176
BshVI ATCGAT 3 cut(s) 324, 443, 447
BsiEI CGRYCG 3 cut(s) 177, 443, 447
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 2 cut(s) 99, 161
BslFI GGGAC 2 cut(s) 71, 376
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 409, 423
BsmFI GGGAC 2 cut(s) 71, 376
BsnI GGCC 2 cut(s) 102, 176
BsoBI CYCGRG 1 cut(s) 386
Bsp143I GATC 5 cut(s) 51, 325, 440, 444, 448
BspACI CCGC 5 cut(s) 116, 177, 221, 243, 427
BspANI GGCC 2 cut(s) 102, 176
BspCNI CTCAG 2 cut(s) 196, 325
BspDI ATCGAT 3 cut(s) 324, 443, 447
BspMI ACCTGC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 2 cut(s) 46, 434
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 5 cut(s) 51, 325, 440, 444, 448
BssNI GRCGYC 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 204, 333
BstF5I GGATG 2 cut(s) 235, 251
BstKTI GATC 5 cut(s) 54, 328, 443, 447, 451
BstMAI GTCTC 2 cut(s) 409, 423
BstMBI GATC 5 cut(s) 51, 325, 440, 444, 448
BstMCI CGRYCG 3 cut(s) 177, 443, 447
BstMWI GCNNNNNNNGC 2 cut(s) 185, 260
BstPAI GACNNNNGTC 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 238
BstZI CGGCCG 1 cut(s) 174
Bsu15I ATCGAT 3 cut(s) 324, 443, 447
BsuRI GGCC 2 cut(s) 102, 176
BsuTUI ATCGAT 3 cut(s) 324, 443, 447
BtsCI GGATG 2 cut(s) 235, 251
BtsIMutI CAGTG 1 cut(s) 59
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 407
Cfr10I RCCGGY 1 cut(s) 98
ClaI ATCGAT 3 cut(s) 324, 443, 447
Csp6I GTAC 1 cut(s) 156
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 204, 333
DpnI GATC 5 cut(s) 53, 327, 442, 446, 450
DpnII GATC 5 cut(s) 51, 325, 440, 444, 448
DriI GACNNNNNGTC 2 cut(s) 388, 415
EaeI YGGCCR 1 cut(s) 174
EagI CGGCCG 1 cut(s) 174
Eam1105I GACNNNNNGTC 2 cut(s) 388, 415
EciI GGCGGA 2 cut(s) 236, 258
EclXI CGGCCG 1 cut(s) 174
Eco52I CGGCCG 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 249
Eco72I CACGTG 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 386
FaiI YATR 2 cut(s) 321, 369
FaqI GGGAC 2 cut(s) 71, 376
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 117, 177, 252, 427
FokI GGATG 2 cut(s) 242, 258
Fsp4HI GCNGC 4 cut(s) 117, 177, 252, 427
FspBI CTAG 1 cut(s) 329
GluI GCNGC 4 cut(s) 117, 177, 252, 427
HaeIII GGCC 2 cut(s) 102, 176
HapII CCGG 2 cut(s) 99, 161
Hin1I GRCGYC 1 cut(s) 398
HinfI GANTC 2 cut(s) 64, 389
HpaII CCGG 2 cut(s) 99, 161
HphI GGTGA 2 cut(s) 16, 203
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 5 cut(s) 149, 205, 377, 409, 440
Hpy8I GTNNAC 1 cut(s) 456
Hpy99I CGWCG 2 cut(s) 220, 400
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 2 cut(s) 256, 398
HpyCH4V TGCA 2 cut(s) 254, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 260
HpyF3I CTNAG 2 cut(s) 204, 333
HpySE526I ACGT 2 cut(s) 256, 398
Hsp92I GRCGYC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 5 cut(s) 51, 325, 440, 444, 448
LmnI GCTCC 1 cut(s) 295
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 329
MaeII ACGT 2 cut(s) 256, 398
MalI GATC 5 cut(s) 53, 327, 442, 446, 450
MboI GATC 5 cut(s) 51, 325, 440, 444, 448
MluCI AATT 3 cut(s) 30, 80, 302
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 9 cut(s) 146, 159, 178, 187, 199, 217, 286, 395, 440
MseI TTAA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 99, 161
MwoI GCNNNNNNNGC 2 cut(s) 185, 260
NdeII GATC 5 cut(s) 51, 325, 440, 444, 448
PaeR7I CTCGAG 1 cut(s) 386
PaqCI CACCTGC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 4 cut(s) 118, 178, 253, 428
Ple19I CGATCG 2 cut(s) 443, 447
PleI GAGTC 1 cut(s) 397
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
PpsI GAGTC 1 cut(s) 397
Ppu21I YACGTR 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 401
PsiI TTATAA 1 cut(s) 369
PspCI CACGTG 1 cut(s) 257
PspXI VCTCGAGB 1 cut(s) 386
PstNI CAGNNNCTG 1 cut(s) 407
PvuI CGATCG 2 cut(s) 443, 447
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 4 cut(s) 117, 177, 252, 427
Sau3AI GATC 5 cut(s) 51, 325, 440, 444, 448
SchI GAGTC 1 cut(s) 398
SfaNI GCATC 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 386
SlaI CTCGAG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 3 cut(s) 30, 80, 302
SsiI CCGC 5 cut(s) 116, 177, 221, 243, 427
SspMI CTAG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 2 cut(s) 259, 401
TaqI TCGA 6 cut(s) 37, 183, 324, 387, 443, 447
TasI AATT 3 cut(s) 30, 80, 302
TauI GCSGC 3 cut(s) 119, 179, 429
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 1 cut(s) 66
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 66
XapI RAATTY 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 386
XspI CTAG 1 cut(s) 329
ZraI GACGTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.