RLG00000008703

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017017
Physical Location & Seq
Forward (+)
35421225 .. 35421917
693 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008703

Sequence Viewer

Length: 321 bp
ATGGACGGACACTGCCAGAGACTCCATGTCGTCGGAGTTCTCCAAGCACAACTTGCGCGATGGCTTTGCTTCTCTGAATTTATTGCAGGCCGAAGCGGTTGGGAGCATCGGACGAGGTACTCCGGCGAGGCAATCGGCGGTGGTCGGGTGGGTGAGGAACAATCTGAGGGTTTTACGGCGGCGGAGGTGGATGGCGGGGCTAGCGGATGGGTTGCACGTGGGGCTTCAGGCAACAACAAGGCATTGAGTGGCGAGGAGCTTGAATTTTGGCAAGGTAGCCATTTCGATCTAGCTGAGTTCAATGTGGTTGTAGTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.48

Weight (kDa)

5.26

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 58
AciI CCGC 6 cut(s) 96, 138, 179, 182, 195, 204
AcsI RAATTY 2 cut(s) 77, 263
AcuI CTGAAG 1 cut(s) 210
AcvI CACGTG 1 cut(s) 218
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 2 cut(s) 263, 301
AhdI GACNNNNNGTC 1 cut(s) 26
AluBI AGCT 2 cut(s) 259, 293
AluI AGCT 2 cut(s) 259, 293
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 77, 263
AspLEI GCGC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 200
BbrPI CACGTG 1 cut(s) 218
BccI CCATC 3 cut(s) 54, 185, 201
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 2 cut(s) 201, 290
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmeRI GACNNNNNGTC 1 cut(s) 26
BmsI GCATC 1 cut(s) 115
BmtI GCTAGC 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 218
BseGI GGATG 2 cut(s) 196, 212
BseMII CTCAG 2 cut(s) 156, 285
BseRI GAGGAG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 6 cut(s) 96, 138, 179, 182, 195, 204
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 157, 286
BspFNI CGCG 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 204
BssMI GATC 1 cut(s) 286
BstAPI GCANNNNNTGC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 88, 202
BstDEI CTNAG 2 cut(s) 165, 294
BstF5I GGATG 2 cut(s) 196, 212
BstFNI CGCG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 3 cut(s) 53, 201, 221
BstUI CGCG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 196, 212
BtsI GCAGTG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 88, 202
CfoI GCGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 26
CviJI RGCY 7 cut(s) 64, 90, 200, 224, 259, 279, 293
CviKI_1 RGCY 7 cut(s) 64, 90, 200, 224, 259, 279, 293
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 165, 294
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 218
FaeI CATG 1 cut(s) 29
FaiI YATR 1 cut(s) 27
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 1 cut(s) 25
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 203, 219
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 201, 290
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 123
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 21
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 4 cut(s) 35, 76, 111, 166
Hpy99I CGWCG 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 86, 215
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 201, 221
HpyF3I CTNAG 2 cut(s) 165, 294
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 103, 256
LpnPI CCDG 5 cut(s) 29, 72, 136, 213, 301
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 201, 290
MaeII ACGT 1 cut(s) 217
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MluCI AATT 2 cut(s) 77, 263
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 108, 121, 148, 160, 178, 247
MspI CCGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 3 cut(s) 53, 201, 221
NdeII GATC 1 cut(s) 286
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 29
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 15
PmaCI CACGTG 1 cut(s) 218
PmlI CACGTG 1 cut(s) 218
PpsI GAGTC 1 cut(s) 15
Ppu21I YACGTR 1 cut(s) 218
PspCI CACGTG 1 cut(s) 218
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 286
SchI GAGTC 1 cut(s) 15
SetI ASST 7 cut(s) 119, 189, 220, 261, 277, 295, 320
SfaNI GCATC 1 cut(s) 115
Sse9I AATT 2 cut(s) 77, 263
SsiI CCGC 6 cut(s) 96, 138, 179, 182, 195, 204
SspMI CTAG 2 cut(s) 201, 290
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 285
TasI AATT 2 cut(s) 77, 263
TauI GCSGC 1 cut(s) 182
TscAI CASTG 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 17
XapI RAATTY 2 cut(s) 77, 263
XspI CTAG 2 cut(s) 201, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.