RLG00000028369

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017017
Physical Location & Seq
Reverse (-)
21961268 .. 21962666
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028369

Sequence Viewer

Length: 375 bp
ATGATCATTTCACTGATTCCAGCTTCTAATCAATTTATCCAAAAAAGAACCGGCCTTTGGTTATTCGCGGCGGCAATATCAGTACTTAGTGGGAGCCTTGGACGAGGTACTCCGGCAAGGCAATCGGCGGCGGTCGGGGCGGGTGAGGAACAATCTAAGGGTTTTACGGCGGAAGAGGTGGATGACGGGGCTGGCAGATGGGTTGCGCGTGGGGCTTCAGGCGACGACGGGGCATTGAGTGGCGAGGAGCTTGAATTTTTGCAAGGTAGCCATATCGATCTAGCTGAGTTCAATGTGGTTGTAGTCAGCCCAGTGGCACATGGAAAACAGACTGCTGACATATGGGACGGTGATAGAGTCATGCTGAACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

12.97

Weight (kDa)

4.61

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 68, 208
AciI CCGC 6 cut(s) 68, 71, 128, 131, 140, 170
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 84, 109
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 2 cut(s) 254, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 3 cut(s) 23, 250, 284
AluI AGCT 3 cut(s) 23, 250, 284
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 254
AspLEI GCGC 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 155, 362
BccI CCATC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 281
BisI GCNGC 3 cut(s) 69, 72, 129
BlsI GCNGC 3 cut(s) 70, 73, 130
BmcAI AGTACT 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 311
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 260
Bsh1236I CGCG 2 cut(s) 68, 208
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 54
BshVI ATCGAT 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 2 cut(s) 51, 113
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 3, 277
BspACI CCGC 6 cut(s) 68, 71, 128, 131, 140, 170
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 277
BspDI ATCGAT 1 cut(s) 276
BspFNI CGCG 2 cut(s) 68, 208
BspLI GGNNCC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 3, 277
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 3 cut(s) 86, 156, 285
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 2 cut(s) 68, 208
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 6, 280
BstMBI GATC 2 cut(s) 3, 277
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 137, 212
BstUI CGCG 2 cut(s) 68, 208
Bsu15I ATCGAT 1 cut(s) 276
BsuRI GGCC 1 cut(s) 54
BsuTUI ATCGAT 1 cut(s) 276
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 11, 318
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 2 cut(s) 83, 108
CviAII CATG 2 cut(s) 320, 361
CviJI RGCY 9 cut(s) 23, 54, 96, 191, 215, 250, 270, 284, 309
CviKI_1 RGCY 9 cut(s) 23, 54, 96, 191, 215, 250, 270, 284, 309
CviQI GTAC 2 cut(s) 83, 108
DdeI CTNAG 3 cut(s) 86, 156, 285
DpnI GATC 2 cut(s) 5, 279
DpnII GATC 2 cut(s) 3, 277
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 323, 364
FaiI YATR 5 cut(s) 273, 321, 341, 343, 362
FaqI GGGAC 1 cut(s) 359
FatI CATG 2 cut(s) 319, 360
FauI CCCGC 1 cut(s) 133
FauNDI CATATG 1 cut(s) 341
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 69, 72, 129
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 69, 72, 129
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 207
GluI GCNGC 3 cut(s) 69, 72, 129
HaeIII GGCC 1 cut(s) 54
HapII CCGG 2 cut(s) 51, 113
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 323, 364
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 2 cut(s) 16, 357
HpaII CCGG 2 cut(s) 51, 113
HphI GGTGA 2 cut(s) 155, 362
Hpy188I TCNGA 1 cut(s) 374
Hpy99I CGWCG 2 cut(s) 227, 230
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 212
HpyF3I CTNAG 3 cut(s) 86, 156, 285
Hsp92II CATG 2 cut(s) 323, 364
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 277
LmnI GCTCC 2 cut(s) 93, 247
LpnPI CCDG 6 cut(s) 33, 64, 126, 177, 204, 324
MaeI CTAG 1 cut(s) 281
MalI GATC 2 cut(s) 5, 279
MboI GATC 2 cut(s) 3, 277
MboII GAAGA 1 cut(s) 185
MluCI AATT 2 cut(s) 32, 254
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 4 cut(s) 98, 139, 169, 238
MspI CCGG 2 cut(s) 51, 113
MvnI CGCG 2 cut(s) 68, 208
MwoI GCNNNNNNNGC 2 cut(s) 137, 212
NdeI CATATG 1 cut(s) 341
NdeII GATC 2 cut(s) 3, 277
NlaIII CATG 2 cut(s) 323, 364
NlaIV GGNNCC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 3 cut(s) 70, 73, 130
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 95
RsaI GTAC 2 cut(s) 84, 109
RsaNI GTAC 2 cut(s) 83, 108
SatI GCNGC 3 cut(s) 69, 72, 129
Sau3AI GATC 2 cut(s) 3, 277
ScaI AGTACT 1 cut(s) 84
SchI GAGTC 1 cut(s) 366
SetI ASST 7 cut(s) 25, 109, 180, 252, 268, 286, 372
Sse9I AATT 2 cut(s) 32, 254
SsiI CCGC 6 cut(s) 68, 71, 128, 131, 140, 170
SspMI CTAG 1 cut(s) 281
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 350
TaqI TCGA 1 cut(s) 276
TasI AATT 2 cut(s) 32, 254
TatI WGTACW 1 cut(s) 82
TauI GCSGC 3 cut(s) 71, 74, 131
TfiI GAWTC 1 cut(s) 16
TscAI CASTG 2 cut(s) 18, 318
TspRI CASTG 2 cut(s) 18, 318
XapI RAATTY 1 cut(s) 254
XspI CTAG 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.