RLG00000011155

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017017
Physical Location & Seq
Forward (+)
7162311 .. 7164601
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011155

Sequence Viewer

Length: 453 bp
ATGATCATTTCACTGATTCCAGCTTCTAATCAATTTGTCCAAAAAAGAACCGGCATTTGGTTATTCGCGGCTGTAATATTAGTACTTAGTGGGAGCATCGGACGAGGTACTCCGGCGAGGCAATCAGCGGTGGTCGGAGCGGGTGAGGAACAATCTGAGGGTTTTACGGCGGCGGAGGTGGATGACGGGGCTGGCGGATGGGCTGCGCGTGGGGCTTCAGGCGACAATTGGGCATTGAGTGGAGAGGAGCTTGAATTTTTGCAAGGTAGCCATATCGATCTAGCTGAGTTCAATGTGGTTGTAGTTAGAAGTCAATCGGTGACTGAGAACCTCACACCACTGAGGGCTCAATTTCGGGATATCCTTTCTGAGGTTTTCCATCACCCAGTCTGTGTGGGAGTTGTGTTTGGTTGGGTGGCGAGTAACGGCGCTGCCATAGGGGTGTGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.84

Weight (kDa)

4.73

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 140
AccII CGCG 2 cut(s) 68, 208
AciI CCGC 6 cut(s) 68, 128, 140, 170, 173, 195
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 84, 109
AfiI CCNNNNNNNGG 2 cut(s) 57, 370
AgsI TTSAA 2 cut(s) 254, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 3 cut(s) 23, 250, 284
AluI AGCT 3 cut(s) 23, 250, 284
ApeKI GCWGC 2 cut(s) 203, 431
ApoI RAATTY 1 cut(s) 254
AspLEI GCGC 2 cut(s) 208, 431
AsuHPI GGTGA 3 cut(s) 155, 331, 374
BanII GRGCYC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 190, 418
BccI CCATC 2 cut(s) 192, 387
BceAI ACGGC 2 cut(s) 183, 442
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 432
BisI GCNGC 4 cut(s) 69, 171, 204, 432
BlsI GCNGC 4 cut(s) 70, 172, 205, 433
BmcAI AGTACT 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 380
BmsI GCATC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 370
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 276
BseGI GGATG 2 cut(s) 187, 203
BseLI CCNNNNNNNGG 2 cut(s) 57, 370
BseMII CTCAG 5 cut(s) 147, 276, 315, 332, 360
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 190, 418
Bsh1236I CGCG 2 cut(s) 68, 208
BshVI ATCGAT 1 cut(s) 276
BsiSI CCGG 2 cut(s) 51, 113
BslI CCNNNNNNNGG 2 cut(s) 57, 370
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 2 cut(s) 3, 277
BspACI CCGC 6 cut(s) 68, 128, 140, 170, 173, 195
BspCNI CTCAG 5 cut(s) 148, 277, 316, 333, 361
BspDI ATCGAT 1 cut(s) 276
BspFNI CGCG 2 cut(s) 68, 208
BsrBI CCGCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 50
BssMI GATC 2 cut(s) 3, 277
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 6 cut(s) 86, 156, 285, 324, 341, 369
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 2 cut(s) 187, 203
BstFNI CGCG 2 cut(s) 68, 208
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 2 cut(s) 208, 431
BstKTI GATC 2 cut(s) 6, 280
BstMBI GATC 2 cut(s) 3, 277
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstUI CGCG 2 cut(s) 68, 208
BstV1I GCAGC 2 cut(s) 190, 418
Bsu15I ATCGAT 1 cut(s) 276
BsuTUI ATCGAT 1 cut(s) 276
BtsCI GGATG 2 cut(s) 187, 203
BtsIMutI CAGTG 2 cut(s) 11, 338
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 2 cut(s) 208, 431
Cfr10I RCCGGY 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 2 cut(s) 83, 108
CviJI RGCY 9 cut(s) 23, 71, 191, 203, 215, 250, 270, 284, 347
CviKI_1 RGCY 9 cut(s) 23, 71, 191, 203, 215, 250, 270, 284, 347
CviQI GTAC 2 cut(s) 83, 108
DdeI CTNAG 6 cut(s) 86, 156, 285, 324, 341, 369
DpnI GATC 2 cut(s) 5, 279
DpnII GATC 2 cut(s) 3, 277
EciI GGCGGA 2 cut(s) 188, 210
Eco24I GRGCYC 1 cut(s) 349
Eco32I GATATC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoRV GATATC 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 349
FaiI YATR 2 cut(s) 273, 437
FauI CCCGC 1 cut(s) 133
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 69, 171, 204, 432
FokI GGATG 2 cut(s) 194, 210
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 4 cut(s) 69, 171, 204, 432
FspBI CTAG 1 cut(s) 281
GlaI GCGC 2 cut(s) 207, 430
GluI GCNGC 4 cut(s) 69, 171, 204, 432
HaeII RGCGCY 1 cut(s) 432
HapII CCGG 2 cut(s) 51, 113
HhaI GCGC 2 cut(s) 208, 431
Hin6I GCGC 2 cut(s) 206, 429
HinP1I GCGC 2 cut(s) 206, 429
HinfI GANTC 1 cut(s) 16
HpaII CCGG 2 cut(s) 51, 113
HphI GGTGA 3 cut(s) 155, 331, 374
Hpy188I TCNGA 4 cut(s) 101, 137, 157, 370
Hpy188III TCNNGA 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 6 cut(s) 86, 156, 285, 324, 341, 369
HspAI GCGC 2 cut(s) 206, 429
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 277
LmnI GCTCC 3 cut(s) 93, 137, 247
LpnPI CCDG 6 cut(s) 33, 64, 126, 177, 204, 399
Lsp1109I GCAGC 2 cut(s) 190, 418
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 319, 422
MalI GATC 2 cut(s) 5, 279
MbiI CCGCTC 1 cut(s) 140
MboI GATC 2 cut(s) 3, 277
MfeI CAATTG 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 4 cut(s) 32, 226, 254, 350
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 9 cut(s) 98, 111, 139, 151, 169, 238, 336, 341, 364
MslI CAYNNNNRTG 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 2 cut(s) 51, 113
MunI CAATTG 1 cut(s) 226
MvnI CGCG 2 cut(s) 68, 208
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 2 cut(s) 3, 277
NmuCI GTSAC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 4 cut(s) 70, 172, 205, 433
RsaI GTAC 2 cut(s) 84, 109
RsaNI GTAC 2 cut(s) 83, 108
RseI CAYNNNNRTG 1 cut(s) 440
SatI GCNGC 4 cut(s) 69, 171, 204, 432
Sau3AI GATC 2 cut(s) 3, 277
ScaI AGTACT 1 cut(s) 84
SduI GDGCHC 1 cut(s) 349
SetI ASST 8 cut(s) 25, 109, 180, 252, 268, 286, 333, 375
SfaNI GCATC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 4 cut(s) 32, 226, 254, 350
SsiI CCGC 6 cut(s) 68, 128, 140, 170, 173, 195
SspI AATATT 1 cut(s) 78
SspMI CTAG 1 cut(s) 281
TaqI TCGA 1 cut(s) 276
TasI AATT 4 cut(s) 32, 226, 254, 350
TatI WGTACW 1 cut(s) 82
TauI GCSGC 2 cut(s) 71, 173
TfiI GAWTC 1 cut(s) 16
TscAI CASTG 2 cut(s) 18, 345
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 203, 431
Tsp45I GTSAC 1 cut(s) 319
TspRI CASTG 2 cut(s) 18, 345
XagI CCTNNNNNAGG 1 cut(s) 368
XapI RAATTY 1 cut(s) 254
XspI CTAG 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.