RLG00000032073

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017017
Physical Location & Seq
Reverse (-)
10682562 .. 10685533
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032073

Sequence Viewer

Length: 639 bp
ATGGCTTCAGATCCAGATTTTATATTCACGGCTATTGATATTCTTGAACTTTTGTCAAGAAGTGTTCCAGCAGATTGGATTAGTGAGGACGGAGAAAACCCAGGCCACGGTGGTCGCCACCTCACAACAACTGCAGCCCAAAACCCAACTGAGTTCTATCCCATTTTTGTATTTGTTCTGTCAAAGGTGGACCTCCCCGGACTAAATAAGGAGGAAGTGAAGGGTGTAGAGGAGCAGTGGCAAGTTCTTGAGGAGGTTCAGGCTGCCAGTACCATCGCCGCCTCCGCACCTCCAGAGCCTCGAGTTCACCGTCAAGTCGCCGGTAGTGAAGTGCTATTTGAAGAAGGCGCTTCTAATCAATTTGTCCAAAAAAGAACCGGCCTTTGGTTATTCGCGGCTGTAATATCAGTACTTAGTGGGAGCCTTGGACGAGGTACTTCGGCAAGGCAATCGGTGGCGGTCGGGGCGGGTGAGGAACAATCTAAGGGTTTTACGGCGGAAGAGGTGGATGACGGGGCTGGCAGATGGGTTGCGCGTGGGGCTTCAGGAGACGACGGGGCATTGAGTGGCGAGGAGCTTGAATTTTTGCAAGGTAGCCATATCGATCTAGCTGAGTTCAATGTGGTTGTAGTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.64

Weight (kDa)

4.46

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 395, 535
AciI CCGC 6 cut(s) 279, 285, 395, 458, 467, 497
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 3 cut(s) 271, 411, 436
AfiI CCNNNNNNNGG 2 cut(s) 107, 384
AgsI TTSAA 4 cut(s) 47, 341, 581, 619
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 367, 399
AluBI AGCT 2 cut(s) 577, 611
AluI AGCT 2 cut(s) 577, 611
Alw26I GTCTC 1 cut(s) 543
AlwI GGATC 1 cut(s) 5
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 2 cut(s) 103, 379
ApeKI GCWGC 2 cut(s) 134, 263
ApoI RAATTY 1 cut(s) 581
AspLEI GCGC 2 cut(s) 350, 535
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 299, 482
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 146, 250
BccI CCATC 2 cut(s) 281, 519
BceAI ACGGC 2 cut(s) 45, 510
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 1 cut(s) 608
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 351
BisI GCNGC 4 cut(s) 135, 264, 279, 396
BlsI GCNGC 4 cut(s) 136, 265, 280, 397
BmcAI AGTACT 1 cut(s) 411
Bme1390I CCNGG 2 cut(s) 102, 198
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 422
BmrFI CCNGG 2 cut(s) 102, 198
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 603
BsaJI CCNNGG 4 cut(s) 100, 106, 196, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 384
Bse118I RCCGGY 2 cut(s) 320, 377
Bse1I ACTGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 4 cut(s) 100, 106, 196, 424
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 107, 384
BseMII CTCAG 2 cut(s) 141, 603
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 3 cut(s) 245, 266, 587
BseXI GCAGC 2 cut(s) 146, 250
Bsh1236I CGCG 2 cut(s) 395, 535
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 2 cut(s) 105, 381
BshVI ATCGAT 1 cut(s) 603
BsiEI CGRYCG 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 3 cut(s) 198, 321, 378
BslI CCNNNNNNNGG 2 cut(s) 107, 384
BsmAI GTCTC 1 cut(s) 543
BsmBI CGTCTC 1 cut(s) 543
BsnI GGCC 2 cut(s) 105, 381
BsoBI CYCGRG 1 cut(s) 300
Bsp143I GATC 2 cut(s) 10, 604
BspACI CCGC 6 cut(s) 279, 285, 395, 458, 467, 497
BspANI GGCC 2 cut(s) 105, 381
BspCNI CTCAG 2 cut(s) 142, 604
BspDI ATCGAT 1 cut(s) 603
BspFNI CGCG 2 cut(s) 395, 535
BspLI GGNNCC 1 cut(s) 422
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 5
BsrFI RCCGGY 2 cut(s) 320, 377
BsrI ACTGG 1 cut(s) 267
BssAI RCCGGY 2 cut(s) 320, 377
BssECI CCNNGG 4 cut(s) 100, 106, 196, 424
BssMI GATC 2 cut(s) 10, 604
BssT1I CCWWGG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 110, 311
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 4 cut(s) 150, 413, 483, 612
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 514
BstFNI CGCG 2 cut(s) 395, 535
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 2 cut(s) 350, 535
BstKTI GATC 2 cut(s) 13, 607
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 2 cut(s) 10, 604
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 3 cut(s) 284, 464, 539
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 2 cut(s) 100, 196
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 2 cut(s) 395, 535
BstV1I GCAGC 2 cut(s) 146, 250
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 75
BstYI RGATCY 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 2 cut(s) 105, 381
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 1 cut(s) 106
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 520
CfoI GCGC 2 cut(s) 350, 535
Cfr10I RCCGGY 2 cut(s) 320, 377
Cfr13I GGNCC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 3 cut(s) 270, 410, 435
CviQI GTAC 3 cut(s) 270, 410, 435
DdeI CTNAG 4 cut(s) 150, 413, 483, 612
DpnI GATC 2 cut(s) 12, 606
DpnII GATC 2 cut(s) 10, 604
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
EciI GGCGGA 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 543
FaiI YATR 2 cut(s) 23, 600
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 4 cut(s) 135, 264, 279, 396
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 4 cut(s) 135, 264, 279, 396
FspBI CTAG 1 cut(s) 608
GlaI GCGC 2 cut(s) 349, 534
GluI GCNGC 4 cut(s) 135, 264, 279, 396
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 2 cut(s) 105, 381
HapII CCGG 3 cut(s) 198, 321, 378
HhaI GCGC 2 cut(s) 350, 535
Hin6I GCGC 2 cut(s) 348, 533
HinP1I GCGC 2 cut(s) 348, 533
HpaII CCGG 3 cut(s) 198, 321, 378
HphI GGTGA 2 cut(s) 299, 482
Hpy166II GTNNAC 2 cut(s) 190, 307
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 6 cut(s) 14, 44, 57, 248, 293, 546
Hpy8I GTNNAC 2 cut(s) 190, 307
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 2 cut(s) 214, 338
HpyCH4III ACNGT 2 cut(s) 110, 311
HpyCH4V TGCA 2 cut(s) 134, 589
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 464, 539
HpyF3I CTNAG 4 cut(s) 150, 413, 483, 612
HspAI GCGC 2 cut(s) 348, 533
Kzo9I GATC 2 cut(s) 10, 604
LmnI GCTCC 3 cut(s) 232, 420, 574
Lsp1109I GCAGC 2 cut(s) 146, 250
MaeI CTAG 1 cut(s) 608
MalI GATC 2 cut(s) 12, 606
MboI GATC 2 cut(s) 10, 604
MboII GAAGA 2 cut(s) 353, 512
MflI RGATCY 1 cut(s) 10
MluCI AATT 2 cut(s) 359, 581
MspI CCGG 3 cut(s) 198, 321, 378
MspR9I CCNGG 2 cut(s) 102, 198
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 2 cut(s) 395, 535
MwoI GCNNNNNNNGC 3 cut(s) 284, 464, 539
NciI CCSGG 1 cut(s) 198
NdeII GATC 2 cut(s) 10, 604
NlaIV GGNNCC 1 cut(s) 422
PaeR7I CTCGAG 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PkrI GCNGC 4 cut(s) 136, 265, 280, 397
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 300
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 3 cut(s) 271, 411, 436
RsaNI GTAC 3 cut(s) 270, 410, 435
SatI GCNGC 4 cut(s) 135, 264, 279, 396
Sau3AI GATC 2 cut(s) 10, 604
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 411
ScrFI CCNGG 2 cut(s) 102, 198
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 248, 300
SmoI CTYRAG 2 cut(s) 248, 300
Sse9I AATT 2 cut(s) 359, 581
SsiI CCGC 6 cut(s) 279, 285, 395, 458, 467, 497
SspMI CTAG 1 cut(s) 608
StyD4I CCNGG 2 cut(s) 100, 196
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 110, 311
TaqI TCGA 2 cut(s) 301, 603
TasI AATT 2 cut(s) 359, 581
TatI WGTACW 1 cut(s) 409
TauI GCSGC 2 cut(s) 281, 398
TscAI CASTG 1 cut(s) 242
TseI GCWGC 2 cut(s) 134, 263
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 581
XhoI CTCGAG 1 cut(s) 300
XspI CTAG 1 cut(s) 608
ZrmI AGTACT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.