Rroxscaffold_3G00261240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017017
Physical Location & Seq
Forward (+)
55576109 .. 55576790
682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261240.1

Sequence Viewer

Length: 402 bp
ATGGTTGACGGCAATCTAGACCTTCTTGTGCAGCTTGCGGGAGATATGACGGAGGCGGGCCACGCGGCGAAGGATGGTGATGATGGGAGAAAACCCAAAACTGATTTTTCCACGATTGCGTGTCTATTACTTAGTGGGAGCATCGGACGAGGTACTCCGACAAGGCAATCGGCGGCGGTCGAGGCCGGTGTGGAACAATATGAGGGTTTTACGGTGGCGGAGGTGGATGACGGGGCTGGTGGATGGGCTATGCGTGGGGCTTCGGGCGACGATGGGGAATTGAGTGGCGAGGAGCTTGAATTTTTGCAAGGTAGCCATATCGATCTAGTTGAGTTCAATGTGTTTGTAGTCGAGGTAGTGCTTGGAAAGGGTTGGGTGGTTGAGAGAGAAGGTGAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

13.94

Weight (kDa)

4.14

Isoelectric Point (pI)

20.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 65
AciI CCGC 6 cut(s) 38, 56, 65, 173, 176, 218
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 1 cut(s) 154
AgsI TTSAA 2 cut(s) 299, 337
AluBI AGCT 2 cut(s) 34, 295
AluI AGCT 2 cut(s) 34, 295
AoxI GGCC 2 cut(s) 58, 183
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 89
BbvI GCAGC 1 cut(s) 43
BccI CCATC 4 cut(s) 68, 77, 237, 266
BceAI ACGGC 1 cut(s) 25
BfaI CTAG 2 cut(s) 17, 326
BglII AGATCT 1 cut(s) 396
BisI GCNGC 3 cut(s) 32, 66, 174
BlsI GCNGC 3 cut(s) 33, 67, 175
BmgT120I GGNCC 1 cut(s) 58
BmsI GCATC 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 185
BseCI ATCGAT 1 cut(s) 321
BseGI GGATG 3 cut(s) 79, 232, 248
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 60, 185
BshVI ATCGAT 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 180
BsiSI CCGG 1 cut(s) 186
BsnI GGCC 2 cut(s) 60, 185
Bsp143I GATC 2 cut(s) 322, 396
BspACI CCGC 6 cut(s) 38, 56, 65, 173, 176, 218
BspANI GGCC 2 cut(s) 60, 185
BspDI ATCGAT 1 cut(s) 321
BspFNI CGCG 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 2 cut(s) 322, 396
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 36, 58
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 3 cut(s) 79, 232, 248
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 2 cut(s) 325, 399
BstMBI GATC 2 cut(s) 322, 396
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 62, 182
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 2 cut(s) 60, 185
BsuTUI ATCGAT 1 cut(s) 321
BtsCI GGATG 3 cut(s) 79, 232, 248
Cac8I GCNNGC 2 cut(s) 36, 58
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 153
CviJI RGCY 8 cut(s) 34, 60, 185, 236, 248, 260, 295, 315
CviKI_1 RGCY 8 cut(s) 34, 60, 185, 236, 248, 260, 295, 315
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 324, 398
DpnII GATC 2 cut(s) 322, 396
EciI GGCGGA 1 cut(s) 233
FaiI YATR 4 cut(s) 47, 201, 251, 318
FauI CCCGC 2 cut(s) 31, 49
Fnu4HI GCNGC 3 cut(s) 32, 66, 174
FokI GGATG 3 cut(s) 86, 239, 255
Fsp4HI GCNGC 3 cut(s) 32, 66, 174
FspBI CTAG 2 cut(s) 17, 326
GluI GCNGC 3 cut(s) 32, 66, 174
HaeIII GGCC 2 cut(s) 60, 185
HapII CCGG 1 cut(s) 186
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 146, 159, 401
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 32, 64, 383
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 31, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 182
HpyF3I CTNAG 1 cut(s) 131
Kzo9I GATC 2 cut(s) 322, 396
LmnI GCTCC 2 cut(s) 138, 292
LpnPI CCDG 2 cut(s) 199, 222
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 17, 326
MalI GATC 2 cut(s) 324, 398
MboI GATC 2 cut(s) 322, 396
MflI RGATCY 1 cut(s) 396
MluCI AATT 2 cut(s) 278, 299
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 7 cut(s) 46, 143, 175, 196, 214, 283, 346
MspI CCGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 62, 182
NdeII GATC 2 cut(s) 322, 396
PkrI GCNGC 3 cut(s) 33, 67, 175
PspPI GGNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 396
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SatI GCNGC 3 cut(s) 32, 66, 174
Sau3AI GATC 2 cut(s) 322, 396
Sau96I GGNCC 1 cut(s) 58
SetI ASST 8 cut(s) 24, 36, 154, 225, 297, 313, 357, 394
SfaNI GCATC 1 cut(s) 150
Sse9I AATT 2 cut(s) 278, 299
SsiI CCGC 6 cut(s) 38, 56, 65, 173, 176, 218
SspMI CTAG 2 cut(s) 17, 326
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 3 cut(s) 180, 321, 351
TasI AATT 2 cut(s) 278, 299
TauI GCSGC 2 cut(s) 68, 176
TseI GCWGC 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 65
XapI RAATTY 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 16
XspI CTAG 2 cut(s) 17, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.