RLG00000022280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017017
Physical Location & Seq
Reverse (-)
82205656 .. 82207616
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022280

Sequence Viewer

Length: 468 bp
ATGGCAGTATTACCCCTCTTTGTAGCGCCACTTGAGGTTAAGTGTAGAAAGAAGAATCGAGAAGCCTCCAACTTCCAGTCTCAGACGGATATATCTCTATCTGATGGTACGGGCACCAGCCTGCTTGAATTGGTTCATCGACGCGCCAAACGAAGTGATTTGGAAGGGTCAAAAGCAGCTTCTAATCAATTTGTCCAAAAAAGAACCGGCCTTTGGTTATTTGCGGCTGTAATATCAGTACTTAGTGGGAGCATCAGACTAGGTACTCTGGCGAGGCAATCGGCGGCGGTCGGGGCGGGTGAGGAACAATCTGAGGGTTTTACGGCGGCAGAGGTGGATGACGAGGCTGGCGGATGGGCTGTGCATGGGGCTTCAGGCGACGACGGGGCATTGAGTAGCAAGGAGCTTGAGTTTTTGCAAGGTAGCCATATCAATCTAGCTGAGTTCAATGTGGTTGTAGTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.44

Weight (kDa)

5.62

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AccII CGCG 1 cut(s) 144
AciI CCGC 6 cut(s) 224, 284, 287, 296, 326, 351
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 3 cut(s) 109, 240, 265
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 128, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AluBI AGCT 3 cut(s) 179, 406, 440
AluI AGCT 3 cut(s) 179, 406, 440
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 28, 146
AsuHPI GGTGA 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 188
BccI CCATC 2 cut(s) 98, 348
BceAI ACGGC 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 260, 437
BfoI RGCGCY 1 cut(s) 29
BisI GCNGC 4 cut(s) 177, 225, 285, 327
BlsI GCNGC 4 cut(s) 178, 226, 286, 328
BmcAI AGTACT 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 53, 428
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 343, 359
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 95, 303, 432
BseNI ACTGG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 291
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 116
BspACI CCGC 6 cut(s) 224, 284, 287, 296, 326, 351
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 3 cut(s) 94, 304, 433
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 122, 349
BstDEI CTNAG 4 cut(s) 81, 242, 312, 441
BstF5I GGATG 2 cut(s) 343, 359
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 146
BstMAI GTCTC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 343, 359
Cac8I GCNNGC 2 cut(s) 122, 349
CfoI GCGC 2 cut(s) 28, 146
Cfr10I RCCGGY 1 cut(s) 206
CseI GACGC 1 cut(s) 150
Csp6I GTAC 3 cut(s) 108, 239, 264
CviAII CATG 1 cut(s) 365
CviQI GTAC 3 cut(s) 108, 239, 264
DdeI CTNAG 4 cut(s) 81, 242, 312, 441
EciI GGCGGA 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 357
FaeI CATG 1 cut(s) 368
FaiI YATR 3 cut(s) 92, 366, 429
FatI CATG 1 cut(s) 364
FauI CCCGC 1 cut(s) 289
Fnu4HI GCNGC 4 cut(s) 177, 225, 285, 327
FokI GGATG 2 cut(s) 350, 366
Fsp4HI GCNGC 4 cut(s) 177, 225, 285, 327
FspBI CTAG 2 cut(s) 260, 437
GlaI GCGC 2 cut(s) 27, 145
GluI GCNGC 4 cut(s) 177, 225, 285, 327
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 150
HhaI GCGC 2 cut(s) 28, 146
Hin1II CATG 1 cut(s) 368
Hin6I GCGC 2 cut(s) 26, 144
HinP1I GCGC 2 cut(s) 26, 144
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 4 cut(s) 84, 103, 257, 313
Hpy188III TCNNGA 1 cut(s) 59
Hpy99I CGWCG 3 cut(s) 144, 383, 386
HpyAV CCTTC 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 364, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 4 cut(s) 81, 242, 312, 441
Hsp92II CATG 1 cut(s) 368
HspAI GCGC 2 cut(s) 26, 144
LmnI GCTCC 2 cut(s) 249, 403
LpnPI CCDG 8 cut(s) 89, 130, 134, 220, 254, 333, 360, 448
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 261
MaeI CTAG 2 cut(s) 260, 437
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 2 cut(s) 128, 188
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 8 cut(s) 26, 28, 76, 267, 295, 307, 325, 337
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 4 cut(s) 178, 226, 286, 328
PspN4I GGNNCC 1 cut(s) 115
RsaI GTAC 3 cut(s) 109, 240, 265
RsaNI GTAC 3 cut(s) 108, 239, 264
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 4 cut(s) 177, 225, 285, 327
ScaI AGTACT 1 cut(s) 240
SduI GDGCHC 1 cut(s) 116
SetI ASST 8 cut(s) 39, 181, 265, 336, 408, 424, 442, 467
SfaNI GCATC 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 32, 407
SmoI CTYRAG 2 cut(s) 32, 407
Sse9I AATT 2 cut(s) 128, 188
SsiI CCGC 6 cut(s) 224, 284, 287, 296, 326, 351
SspMI CTAG 2 cut(s) 260, 437
TaqI TCGA 2 cut(s) 58, 139
TasI AATT 2 cut(s) 128, 188
TatI WGTACW 1 cut(s) 238
TauI GCSGC 3 cut(s) 227, 287, 329
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 2 cut(s) 260, 437
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.