RLG00000012703

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017017
Physical Location & Seq
Reverse (-)
21478676 .. 21483172
4497 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012703

Sequence Viewer

Length: 321 bp
ATGCACAAAGATGGCGTCGACTGTGCAGATTTTACTGGTCAGGGTGGCGTGGTTCCGACCAGGTGTGGGTTGCCGCTTGACAAACCTTTAGTACTTAGTGGGAGCCTTGGACGAGGTACTCCAGCAAGGCAATCGGCGGCGGTCGGGGCGGGTGAGGAACAATCTAAGGGTTTTACGGCGGAAGAGGTGGATGACGGGGCTGACAGATGGGTTGCGCGTGGGGCTTCAGGCGATGACTGGGAATTGAGTGGCGAGGAGCTTGAATTTTTGCAAGGTAGCCATATCGATCTAGCTAAGTTCAATATGGTTGTAGTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.13

Weight (kDa)

4.55

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 217
AciI CCGC 5 cut(s) 74, 137, 140, 149, 179
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 93, 118
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 2 cut(s) 263, 301
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 2 cut(s) 259, 293
AluI AGCT 2 cut(s) 259, 293
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 1 cut(s) 32
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 164
BccI CCATC 2 cut(s) 5, 201
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BciT130I CCWGG 1 cut(s) 61
BfaI CTAG 1 cut(s) 290
BisI GCNGC 2 cut(s) 74, 138
BlsI GCNGC 2 cut(s) 75, 139
BmcAI AGTACT 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 54, 104
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 40, 242
BseBI CCWGG 1 cut(s) 61
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 40, 242
BseRI GAGGAG 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 66
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 5 cut(s) 74, 137, 140, 149, 179
BspDI ATCGAT 1 cut(s) 285
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 54, 104
BsrI ACTGG 2 cut(s) 40, 242
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 286
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 95, 165, 294
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 146, 221
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstUI CGCG 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 285
BsuTUI ATCGAT 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 196
CfoI GCGC 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 285
CseI GACGC 1 cut(s) 4
CsiI ACCWGGT 1 cut(s) 59
Csp6I GTAC 2 cut(s) 92, 117
CviJI RGCY 6 cut(s) 105, 200, 224, 259, 279, 293
CviKI_1 RGCY 6 cut(s) 105, 200, 224, 259, 279, 293
CviQI GTAC 2 cut(s) 92, 117
DdeI CTNAG 3 cut(s) 95, 165, 294
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaiI YATR 2 cut(s) 282, 305
FauI CCCGC 1 cut(s) 142
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 74, 138
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 74, 138
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 74, 138
GsuI CTGGAG 1 cut(s) 105
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 4, 26, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 221
HpyF3I CTNAG 3 cut(s) 95, 165, 294
Hsp92I GRCGYC 1 cut(s) 15
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 102, 256
LpnPI CCDG 8 cut(s) 21, 26, 46, 73, 135, 213, 223, 301
MabI ACCWGGT 1 cut(s) 59
MaeI CTAG 1 cut(s) 290
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 194
MluCI AATT 2 cut(s) 242, 263
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 4 cut(s) 107, 148, 178, 247
MslI CAYNNNNRTG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 146, 221
NdeII GATC 1 cut(s) 286
NlaIV GGNNCC 2 cut(s) 54, 104
PkrI GCNGC 2 cut(s) 75, 139
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 54, 104
RsaI GTAC 2 cut(s) 93, 118
RsaNI GTAC 2 cut(s) 92, 117
RseI CAYNNNNRTG 1 cut(s) 9
SalI GTCGAC 1 cut(s) 17
SatI GCNGC 2 cut(s) 74, 138
Sau3AI GATC 1 cut(s) 286
ScaI AGTACT 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 61
SetI ASST 8 cut(s) 65, 88, 118, 189, 261, 277, 295, 320
SexAI ACCWGGT 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 9
Sse9I AATT 2 cut(s) 242, 263
SsiI CCGC 5 cut(s) 74, 137, 140, 149, 179
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 18, 285
TasI AATT 2 cut(s) 242, 263
TatI WGTACW 1 cut(s) 91
TauI GCSGC 2 cut(s) 76, 140
XapI RAATTY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 1 cut(s) 290
ZrmI AGTACT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.