RLG00000001548

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004811
Physical Location & Seq
Forward (+)
17291228 .. 17299914
8687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001548

Sequence Viewer

Length: 1563 bp
ATGCACGGCTACAGCCGCCTAGGCATGCCCCGCGGCGGCGGCGGCGGCGGCGGCTCTATTACGGCCTCGCCGCCGTCCTCTCCGCGGTGCCGCCACGGCCGGAGCAAGAACTCCTCCGGCGGCGGCCGCGGCCCCAAGCAGCAGAGCATTGCGGAGAGGGCGGTGTTTTTTATCATCTCGGTGGTGTTTAGAAGACGAGGCATGCTTTTATTCGCGCCTCTGTTGTATATTTCCGGAATGTTGTTGTATATGGGCTCTGTGAGCTTCGATGTAGTTAGCTTGAAGAACGTTGTGATTATCAGTAAGCCGTCGCCGCCGGGATCACAGTACAGGAGTCCTCAGGTTTTTCAGAAGCTCTGGCCTTATATGCAGGCCGAGAGTAATCACACTCCCAATTTGTTGATGACAGTGTGGAACTCAAAGGTGCATAAAGTTTGGAAGCCTTGTATTCCCCAAGATACTCCAAAAGCAGAGTTACCAAAGTCAAATGGTCTATTCATAATTGAAGCGAACGGTGGGTTGAACCAGCAACGGCTGTCGATATGTGATGCAGTTGCTGTGGCTGGACTCTTAAATGCAACTCTTCTGATTCCAATCTTTCATCTAAATAGTGTTTGGAGAGACTCAAGTCACTTTGGGAACATATTTGATGAAGATTTCTTCATCCATGCTCTCAGAAATCACGTTAATGTGGTCAGGGAACTTCCAGAAGATATACTTCAGCGGTTTGACAATAATATAAGCAACATTGTGAATTTGAGAGTGAAAGGTTGGTCAAGTTCAGCCCACTATCTCCGTAAGGTCCTCCCGAAGTTAGAGGAGATGGGGGCCGTGCGCATTGCACCTTTTTCAAACAGATTGGCTCATGCAGTTCCTTCAAACATCCAGAGCCTTAGATGCTTAGCCAATTTTGAAGCACTGAGGTTCTCGAATTCAATAAGACTGCTTGCAGATAAAATGGTTGATCGAATGGTCAAAAGTAGCTCCCACAGTGAAGGCAAATATGTTTCAGTACATCTTCGCTTTGAAGAGGACATGGTTGCGTTTTCATGCTGTGAATATGATGGTGGGGAGGAAGAGAAACATGAAATGGATATTGCTCGAGAAAGAAGCTGGAGAGGAAAATTCAGGAGAAGGGGTAGAGTAATTAGGCCGGGTGCAAATCGTGTTGATGGGAAATGCCCTCTAACGCCATTAGAGGTAGGAATGATGCTCAGGGGCATGGGATTTGATAATACCACCTCAGTATACATTGCAGCAGGTAAAATTTATAAAGCAGAAAAGTACATGGCTCCACTTAAACAGATGTTTCCACGCTTGCAAATGAAAGACACACTGGCTACTTCAGAAGAACTTGCTCCTTTTAAGGGCCACTTATCTAGGTTGGCTGCTCTTGATTACACGGTTTGCCTCCATAGTGAAGTGTTTGTCACCACTCAGGGCGGTAATTTTCCACACTTTTTGATGGGCCACAGGCGCTATCTCTATGGAGGACATTCAAAGACAATCAAGCCTGATAAGCGTAAATTGGCACTGTTGTTTGATAATCCCAGTATCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

521

Amino Acids

58.36

Weight (kDa)

9.88

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 168 - 495 9.1e-100 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1272
Acc16I TGCGCA 1 cut(s) 836
Acc36I ACCTGC 1 cut(s) 1250
AccB1I GGYRCC 1 cut(s) 87
AccI GTMKAC 1 cut(s) 1248
AccII CGCG 4 cut(s) 33, 85, 129, 215
AccIII TCCGGA 1 cut(s) 233
AclI AACGTT 1 cut(s) 288
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 2 cut(s) 97, 124
AcsI RAATTY 4 cut(s) 754, 931, 1124, 1266
AcuI CTGAAG 2 cut(s) 704, 1329
AfaI GTAC 3 cut(s) 329, 1014, 1286
AfiI CCNNNNNNNGG 4 cut(s) 35, 84, 1367, 1557
AgsI TTSAA 9 cut(s) 283, 506, 523, 852, 879, 914, 936, 1028, 1500
AluBI AGCT 5 cut(s) 264, 279, 355, 984, 1113
AluI AGCT 5 cut(s) 264, 279, 355, 984, 1113
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 557
Ama87I CYCGRG 1 cut(s) 1101
Aor13HI TCCGGA 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 139, 1256, 1388
ApoI RAATTY 4 cut(s) 754, 931, 1124, 1266
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 3 cut(s) 217, 837, 1479
AspS9I GGNCC 5 cut(s) 131, 802, 828, 1369, 1468
AsuC2I CCSGG 2 cut(s) 318, 1155
AsuHPI GGTGA 1 cut(s) 1423
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 1 cut(s) 802
AvrII CCTAGG 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 339
BanI GGYRCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 3 cut(s) 151, 1268, 1375
BccI CCATC 4 cut(s) 817, 1058, 1166, 1459
BceAI ACGGC 7 cut(s) 22, 58, 78, 112, 292, 548, 815
BcnI CCSGG 2 cut(s) 318, 1155
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 2 cut(s) 20, 1380
BfmI CTRYAG 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 1480
BfuAI ACCTGC 1 cut(s) 1250
BglI GCCNNNNNGGC 2 cut(s) 21, 96
BlnI CCTAGG 1 cut(s) 19
BlpI GCTNAGC 1 cut(s) 901
Bme1390I CCNGG 2 cut(s) 318, 1155
Bme18I GGWCC 1 cut(s) 802
BmeT110I CYCGRG 1 cut(s) 1101
BmgT120I GGNCC 5 cut(s) 131, 802, 828, 1369, 1468
BmiI GGNNCC 4 cut(s) 89, 133, 829, 1293
BmrFI CCNGG 2 cut(s) 318, 1155
BmrI ACTGGG 1 cut(s) 1545
BmsI GCATC 3 cut(s) 538, 887, 1200
BmuI ACTGGG 1 cut(s) 1545
BoxI GACNNNNGTC 1 cut(s) 627
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 1135
Bpu10I CCTNAGC 1 cut(s) 1214
Bpu1102I GCTNAGC 1 cut(s) 901
BpuEI CTTGAG 1 cut(s) 610
BpuMI CCSGG 2 cut(s) 318, 1155
BsaBI GATNNNNATC 1 cut(s) 593
BsaJI CCNNGG 5 cut(s) 19, 31, 83, 94, 127
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 1123, 1153
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 84, 1367, 1557
Bse1I ACTGG 2 cut(s) 1341, 1551
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 3 cut(s) 147, 837, 1251
Bse8I GATNNNNATC 1 cut(s) 593
BseAI TCCGGA 1 cut(s) 233
BseDI CCNNGG 5 cut(s) 19, 31, 83, 94, 127
BseGI GGATG 2 cut(s) 663, 882
BseJI GATNNNNATC 1 cut(s) 593
BseLI CCNNNNNNNGG 4 cut(s) 35, 84, 1367, 1557
BseMI GCAATG 3 cut(s) 147, 837, 1251
BseMII CTCAG 6 cut(s) 353, 688, 911, 1228, 1257, 1451
BseNI ACTGG 2 cut(s) 1341, 1551
BseRI GAGGAG 2 cut(s) 103, 833
BseX3I CGGCCG 2 cut(s) 97, 124
BseXI GCAGC 3 cut(s) 151, 1268, 1375
Bsh1236I CGCG 4 cut(s) 33, 85, 129, 215
Bsh1285I CGRYCG 2 cut(s) 100, 127
BshNI GGYRCC 1 cut(s) 87
BsiEI CGRYCG 2 cut(s) 100, 127
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 5 cut(s) 100, 117, 234, 317, 1154
BslI CCNNNNNNNGG 4 cut(s) 35, 84, 1367, 1557
BsmAI GTCTC 1 cut(s) 615
BsoBI CYCGRG 1 cut(s) 1101
Bsp1286I GDGCHC 1 cut(s) 257
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 2 cut(s) 320, 964
Bsp1720I GCTNAGC 1 cut(s) 901
BspCNI CTCAG 6 cut(s) 352, 687, 912, 1227, 1256, 1450
BspEI TCCGGA 1 cut(s) 233
BspFNI CGCG 4 cut(s) 33, 85, 129, 215
BspLI GGNNCC 4 cut(s) 89, 133, 829, 1293
BspMI ACCTGC 1 cut(s) 1250
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 87
BsrDI GCAATG 3 cut(s) 147, 837, 1251
BsrI ACTGG 2 cut(s) 1341, 1551
BssECI CCNNGG 5 cut(s) 19, 31, 83, 94, 127
BssMI GATC 2 cut(s) 320, 964
BssNAI GTATAC 1 cut(s) 1249
BssT1I CCWWGG 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 1249
Bst4CI ACNGT 6 cut(s) 327, 409, 515, 992, 1405, 1536
Bst6I CTCTTC 3 cut(s) 588, 1023, 1071
BstC8I GCNNGC 5 cut(s) 26, 203, 372, 948, 1319
BstDEI CTNAG 8 cut(s) 339, 674, 893, 901, 920, 1214, 1243, 1437
BstDSI CCRYGG 4 cut(s) 31, 83, 94, 127
BstF5I GGATG 2 cut(s) 663, 882
BstFNI CGCG 4 cut(s) 33, 85, 129, 215
BstH2I RGCGCY 1 cut(s) 1480
BstHHI GCGC 3 cut(s) 217, 837, 1479
BstKTI GATC 2 cut(s) 323, 967
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 2 cut(s) 320, 964
BstMCI CGRYCG 2 cut(s) 100, 127
BstNSI RCATGY 2 cut(s) 28, 205
BstPAI GACNNNNGTC 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 316, 1153
BstSFI CTRYAG 1 cut(s) 10
BstUI CGCG 4 cut(s) 33, 85, 129, 215
BstV1I GCAGC 3 cut(s) 151, 1268, 1375
BstV2I GAAGAC 1 cut(s) 199
BstZ17I GTATAC 1 cut(s) 1249
BstZI CGGCCG 2 cut(s) 97, 124
Bsu36I CCTNAGG 1 cut(s) 339
BtgI CCRYGG 4 cut(s) 31, 83, 94, 127
BtsCI GGATG 2 cut(s) 663, 882
BtsIMutI CAGTG 5 cut(s) 414, 917, 997, 1334, 1532
BveI ACCTGC 1 cut(s) 1250
Cac8I GCNNGC 5 cut(s) 26, 203, 372, 948, 1319
CaiI CAGNNNCTG 1 cut(s) 557
CciNI GCGGCCGC 1 cut(s) 124
CfoI GCGC 3 cut(s) 217, 837, 1479
Cfr13I GGNCC 5 cut(s) 131, 802, 828, 1369, 1468
Cfr42I CCGCGG 3 cut(s) 34, 86, 130
Csp6I GTAC 3 cut(s) 328, 1013, 1285
CspCI CAANNNNNGTGG 2 cut(s) 1443, 1478
CviAII CATG 9 cut(s) 25, 202, 668, 866, 1036, 1050, 1085, 1222, 1288
CviQI GTAC 3 cut(s) 328, 1013, 1285
DdeI CTNAG 8 cut(s) 339, 674, 893, 901, 920, 1214, 1243, 1437
DpnI GATC 2 cut(s) 322, 966
DpnII GATC 2 cut(s) 320, 964
EaeI YGGCCR 2 cut(s) 97, 124
EagI CGGCCG 2 cut(s) 97, 124
Eam1104I CTCTTC 3 cut(s) 588, 1023, 1071
EarI CTCTTC 3 cut(s) 588, 1023, 1071
EclXI CGGCCG 2 cut(s) 97, 124
Eco130I CCWWGG 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 802
Eco52I CGGCCG 2 cut(s) 97, 124
Eco57I CTGAAG 2 cut(s) 704, 1329
Eco81I CCTNAGG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 1101
EcoO109I RGGNCCY 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 931
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 9 cut(s) 28, 205, 671, 869, 1039, 1053, 1088, 1225, 1291
FalI AAGNNNNNCTT 4 cut(s) 702, 734, 1358, 1390
FatI CATG 9 cut(s) 24, 201, 667, 865, 1035, 1049, 1084, 1221, 1287
FauI CCCGC 1 cut(s) 38
FblI GTMKAC 1 cut(s) 1248
FokI GGATG 2 cut(s) 650, 869
FriOI GRGCYC 1 cut(s) 257
FspAI RTGCGCAY 1 cut(s) 836
FspBI CTAG 2 cut(s) 20, 1380
FspI TGCGCA 1 cut(s) 836
GlaI GCGC 3 cut(s) 216, 836, 1478
GsuI CTGGAG 1 cut(s) 1135
HaeII RGCGCY 1 cut(s) 1480
HapII CCGG 5 cut(s) 100, 117, 234, 317, 1154
HhaI GCGC 3 cut(s) 217, 837, 1479
Hin1II CATG 9 cut(s) 28, 205, 671, 869, 1039, 1053, 1088, 1225, 1291
Hin6I GCGC 3 cut(s) 215, 835, 1477
HinP1I GCGC 3 cut(s) 215, 835, 1477
HinfI GANTC 4 cut(s) 334, 567, 589, 623
HpaII CCGG 5 cut(s) 100, 117, 234, 317, 1154
HphI GGTGA 1 cut(s) 1423
Hpy166II GTNNAC 1 cut(s) 1249
Hpy188I TCNGA 4 cut(s) 351, 588, 677, 1348
Hpy188III TCNNGA 8 cut(s) 234, 707, 808, 886, 928, 1103, 1129, 1394
Hpy8I GTNNAC 1 cut(s) 1249
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 3 cut(s) 885, 989, 1128
HpyCH4III ACNGT 6 cut(s) 327, 409, 515, 992, 1405, 1536
HpyCH4IV ACGT 2 cut(s) 288, 684
HpyF3I CTNAG 8 cut(s) 339, 674, 893, 901, 920, 1214, 1243, 1437
HpySE526I ACGT 2 cut(s) 288, 684
Hsp92II CATG 9 cut(s) 28, 205, 671, 869, 1039, 1053, 1088, 1225, 1291
HspAI GCGC 3 cut(s) 215, 835, 1477
Kpn2I TCCGGA 1 cut(s) 233
KspI CCGCGG 3 cut(s) 34, 86, 130
Kzo9I GATC 2 cut(s) 320, 964
LmnI GCTCC 4 cut(s) 102, 989, 1297, 1363
Lsp1109I GCAGC 3 cut(s) 151, 1268, 1375
LweI GCATC 3 cut(s) 538, 887, 1200
MaeI CTAG 2 cut(s) 20, 1380
MaeII ACGT 2 cut(s) 288, 684
MaeIII GTNAC 3 cut(s) 474, 629, 1429
MalI GATC 2 cut(s) 322, 966
MboI GATC 2 cut(s) 320, 964
MhlI GDGCHC 1 cut(s) 257
MlyI GAGTC 3 cut(s) 343, 561, 617
MroI TCCGGA 1 cut(s) 233
MseI TTAA 4 cut(s) 572, 687, 1299, 1365
MslI CAYNNNNRTG 2 cut(s) 179, 687
MspA1I CMGCKG 4 cut(s) 33, 85, 129, 724
MspI CCGG 5 cut(s) 100, 117, 234, 317, 1154
MspR9I CCNGG 2 cut(s) 318, 1155
MvnI CGCG 4 cut(s) 33, 85, 129, 215
NciI CCSGG 2 cut(s) 318, 1155
NdeII GATC 2 cut(s) 320, 964
NlaIII CATG 9 cut(s) 28, 205, 671, 869, 1039, 1053, 1088, 1225, 1291
NlaIV GGNNCC 4 cut(s) 89, 133, 829, 1293
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 629, 1429
NotI GCGGCCGC 1 cut(s) 124
NsbI TGCGCA 1 cut(s) 836
NspI RCATGY 2 cut(s) 28, 205
PaeI GCATGC 2 cut(s) 28, 205
PaeR7I CTCGAG 1 cut(s) 1101
PfeI GAWTC 1 cut(s) 589
PleI GAGTC 3 cut(s) 342, 561, 617
PpsI GAGTC 3 cut(s) 342, 561, 617
PpuMI RGGWCCY 1 cut(s) 802
PshAI GACNNNNGTC 1 cut(s) 627
PsiI TTATAA 1 cut(s) 1272
Psp1406I AACGTT 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 802
PspN4I GGNNCC 4 cut(s) 89, 133, 829, 1293
PspPI GGNCC 5 cut(s) 131, 802, 828, 1369, 1468
PspPPI RGGWCCY 1 cut(s) 802
PstNI CAGNNNCTG 1 cut(s) 557
RsaI GTAC 3 cut(s) 329, 1014, 1286
RsaNI GTAC 3 cut(s) 328, 1013, 1285
RseI CAYNNNNRTG 2 cut(s) 179, 687
SacII CCGCGG 3 cut(s) 34, 86, 130
SaqAI TTAA 4 cut(s) 572, 687, 1299, 1365
Sau3AI GATC 2 cut(s) 320, 964
Sau96I GGNCC 5 cut(s) 131, 802, 828, 1369, 1468
SchI GAGTC 3 cut(s) 343, 561, 617
ScrFI CCNGG 2 cut(s) 318, 1155
SduI GDGCHC 1 cut(s) 257
SfaNI GCATC 3 cut(s) 538, 887, 1200
SfcI CTRYAG 1 cut(s) 10
Sfr274I CTCGAG 1 cut(s) 1101
Sfr303I CCGCGG 3 cut(s) 34, 86, 130
SgrBI CCGCGG 3 cut(s) 34, 86, 130
SinI GGWCC 1 cut(s) 802
SlaI CTCGAG 1 cut(s) 1101
SmiMI CAYNNNNRTG 2 cut(s) 179, 687
SmlI CTYRAG 2 cut(s) 625, 1101
SmoI CTYRAG 2 cut(s) 625, 1101
SphI GCATGC 2 cut(s) 28, 205
SspMI CTAG 2 cut(s) 20, 1380
StyD4I CCNGG 2 cut(s) 316, 1153
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 6 cut(s) 327, 409, 515, 992, 1405, 1536
TaiI ACGT 2 cut(s) 291, 687
TaqI TCGA 5 cut(s) 267, 539, 929, 967, 1102
TatI WGTACW 3 cut(s) 327, 1012, 1284
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 4 cut(s) 572, 687, 1299, 1365
Tru9I TTAA 4 cut(s) 572, 687, 1299, 1365
TscAI CASTG 5 cut(s) 414, 924, 997, 1341, 1539
TseFI GTSAC 2 cut(s) 629, 1429
TseI GCWGC 3 cut(s) 139, 1256, 1388
Tsp45I GTSAC 2 cut(s) 629, 1429
TspDTI ATGAA 7 cut(s) 487, 590, 652, 666, 1038, 1101, 1340
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 5 cut(s) 414, 924, 997, 1341, 1539
VpaK11BI GGWCC 1 cut(s) 802
XapI RAATTY 4 cut(s) 754, 931, 1124, 1266
XceI RCATGY 2 cut(s) 28, 205
XhoI CTCGAG 1 cut(s) 1101
XmaJI CCTAGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 1248
XspI CTAG 2 cut(s) 20, 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.