Rorug07G0251300

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004811
Physical Location & Seq
Reverse (-)
23254079 .. 23254894
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0251300.1

Sequence Viewer

Length: 300 bp
ATGGGTTTCCGGCTGCCTGTAATTGTCAGCCCCAAGAGAAGTCTTACCCGATCTTCATCTAATGCGAACAAGACAGCTTCAAAGACCTTAGATATCCCAAAAGGATACTTTGCGGTCTATGTTGGAGAGAGCCAGAAGAAGCGATTTTTGATTCCAATATCATACTTGAACCAACCTTCATTTATGGTTTTGCTGAGTCAAGCTGAAGAAGAATTTGGATATGATCATCCCATGGGCGGTATCACAATCCCCTGCAGTGAAGACACCTTCCTTGATCTCACTTCCCGCTTAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

99

Amino Acids

11.02

Weight (kDa)

8.82

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 96 5.8e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 113, 237, 286
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 236
AflII CTTAAG 1 cut(s) 289
AgsI TTSAA 2 cut(s) 81, 169
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 2 cut(s) 77, 203
AluI AGCT 2 cut(s) 77, 203
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 267
BciVI GTATCC 1 cut(s) 98
BclI TGATCA 1 cut(s) 223
BfmI CTRYAG 1 cut(s) 253
BfrI CTTAAG 1 cut(s) 289
BfuI GTATCC 1 cut(s) 98
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 236
Bsp143I GATC 3 cut(s) 50, 223, 274
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 3 cut(s) 113, 237, 286
BspCNI CTCAG 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 3 cut(s) 50, 223, 274
BssT1I CCWWGG 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 88, 194
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 3 cut(s) 53, 226, 277
BstMBI GATC 3 cut(s) 50, 223, 274
BstSFI CTRYAG 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 267
BsuI GTATCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
CviAII CATG 1 cut(s) 232
CviJI RGCY 5 cut(s) 13, 30, 77, 132, 203
CviKI_1 RGCY 5 cut(s) 13, 30, 77, 132, 203
DdeI CTNAG 2 cut(s) 88, 194
DpnI GATC 3 cut(s) 52, 225, 276
DpnII GATC 3 cut(s) 50, 223, 274
Eco130I CCWWGG 1 cut(s) 231
Eco32I GATATC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 225
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 235
FaiI YATR 5 cut(s) 120, 163, 185, 222, 233
FatI CATG 1 cut(s) 231
FauI CCCGC 1 cut(s) 293
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
HapII CCGG 1 cut(s) 10
Hin1II CATG 1 cut(s) 235
HinfI GANTC 2 cut(s) 151, 196
HpaII CCGG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 186, 277
HpyCH4V TGCA 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 88, 194
Hsp92II CATG 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 3 cut(s) 50, 223, 274
LpnPI CCDG 4 cut(s) 23, 30, 146, 265
MalI GATC 3 cut(s) 52, 225, 276
MboI GATC 3 cut(s) 50, 223, 274
MboII GAAGA 5 cut(s) 45, 148, 218, 221, 272
MluCI AATT 2 cut(s) 21, 212
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 103
MseI TTAA 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 289
MspI CCGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 231
NdeII GATC 3 cut(s) 50, 223, 274
NlaIII CATG 1 cut(s) 235
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PstI CTGCAG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 50, 223, 274
SchI GAGTC 1 cut(s) 205
SetI ASST 5 cut(s) 79, 89, 178, 205, 269
SfcI CTRYAG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 2 cut(s) 21, 212
SsiI CCGC 3 cut(s) 113, 237, 286
StyI CCWWGG 1 cut(s) 231
TasI AATT 2 cut(s) 21, 212
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 45, 168
TspRI CASTG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 289
XapI RAATTY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.