Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019257.1

Orthogroup ID

OG0004811

Physical Location & Seq

Genomic Coordinates Forward (+)

1031 .. 8734

Gene Structure 7704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019257.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

atgcacggctacagccgcctcggcatgccccgcggcggcggctccattacctcctcgccgccgtcctcgccgcggtgccgccacggccggagcaagaactcctccggcggcggcggcggccgcggccccaagcagcagagcattgcggagagggcggtgttttttatcatctcggtggtgtttagaagacgaggcatgcttttattcgcgcctctgttgtatatttccggaatgttgttgtatatgggctctgtgagcttcgatgtagttagcttgaagaacgttgtgattatcagtaagccgtcgccgccgggatcgctgtacaggagtcctcaggtttttcagaagctctggccttatatgcaggccgagagtaatcacactcccaatttgttgatgacagtgtggaactcaaatgtgcataaagtttggaagccttgtattcccaaagatactctgaaagcagaattaccaaagtcaaatggtatattcataattgaagcgaacggcgggttgaaccagcaacggttgtcgatatgtgatgcagttgctgtggctggactcttaaatgcaactcttctgattccaatctttcatctaaatagtgtatggagagactcaagtcactttgggaacatatttgatgaggatttcttcatccatgctctcagaagtcacgttaatgtggtcagggaacttccagaagatatacttcagcggtttgacaataatataagcaacattgtgaatttgagggtgaaaggttggtcaagttcagctcactatctccgtaaggtcctcccgaagttagaggagatgggggccgtgcgcattgcacctttttcaaacagattggctcatgcggttccttcaaacgtccagagccttagatgcttggccaattttgaagcactgagattctcgaattcaataagactgcttgcagataaaatggttgatcgaatggtcaaaagtagctcccacagtgaaggcaaatatgtttcagtacatcttcgctttgaagaggacatggttgcgttttcatgctgtgaatatgatggtggggaggaagagaaacatgaaatggatattgctcgagaaagaagctggagaggaaaattcaggagaaggggtagagtaattcggccaggtgcaaatcgtgttgatgggaaatgccctttaacgccattagagacaatcaagcctgataagcgtaaattggcgctgttgtttgataatcccagtatcagatgggaagatttcaagcgacagatgcaagacatgctcagacacagtgagcagaagggtgttgaagtgagaaaacccagtgcctcactatatacatttcccatgccagattacaattttatgtatggcgtcgaaatctggatggtggatctatccatacctcccttatttgctattcaccccaactttgcccatattagtttctctcaacacctcctctctctcacctccacacgggagtggtgccgccacaaccacctccgacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

505

Amino Acids

57.44

Weight (kDa)

9.8

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35510
fragaria_vesca	FvH4_5g32330 FvH4_5g32330 FvH4_5g32330 FvH4_5g32330 FvH4_5g32330
malus_domestica	MD08G1220400.v1.1 MD15G1411100.v1.1
prunus_persica	Prupe.1G551500_v2.0.a1 Prupe.1G551500_v2.0.a1 Prupe.1G551500_v2.0.a1 Prupe.1G551500_v2.0.a1 Prupe.1G551500_v2.0.a1 Prupe.1G551500_v2.0.a1 Prupe.1G551500_v2.0.a1 Prupe.1G551500_v2.0.a1
pyrus_communis	pycom08g19120 pycom15g36590
rosa_chinensis	RchiOBHm_Chr7g0228671
rosa_laevigata	RLG00000001548
rosa_multiflora	Rmu_sc0004237.1_g000008 Rmu_sc0019257.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230930
rosa_rugosa	Rorug07G0251300 Rorug07G0251400
rosa_samantha	Rh7AG403500 Rh7BG384100 Rh7CG422700 Rh7DG399100
rosa_wichuraiana	Rw7G033510 Rw7G033540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	830
AccB1I	GGYRCC	2 cut(s)	75, 1491
AccII	CGCG	4 cut(s)	33, 73, 123, 209
AccIII	TCCGGA	1 cut(s)	227
AclI	AACGTT	1 cut(s)	282
AclWI	GGATC	2 cut(s)	322, 1404
AcoI	YGGCCR	4 cut(s)	85, 118, 897, 1145
AcsI	RAATTY	3 cut(s)	748, 925, 1118
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	1377
AfaI	GTAC	2 cut(s)	323, 1008
AfiI	CCNNNNNNNGG	3 cut(s)	35, 72, 1482
AjnI	CCWGG	1 cut(s)	1147
AleI	CACNNNNGTG	1 cut(s)	1486
AluBI	AGCT	6 cut(s)	258, 273, 349, 779, 978, 1107
AluI	AGCT	6 cut(s)	258, 273, 349, 779, 978, 1107
Alw26I	GTCTC	2 cut(s)	609, 1187
AlwI	GGATC	2 cut(s)	322, 1404
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	1095
Aor13HI	TCCGGA	1 cut(s)	227
AoxI	GGCC	8 cut(s)	85, 118, 124, 353, 366, 822, 897, 1145
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	3 cut(s)	748, 925, 1118
AspLEI	GCGC	3 cut(s)	211, 831, 1225
AspS9I	GGNCC	3 cut(s)	125, 796, 822
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	3 cut(s)	769, 1418, 1465
AvaI	CYCGRG	1 cut(s)	1095
AvaII	GGWCC	1 cut(s)	796
AxyI	CCTNAGG	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	899
BanI	GGYRCC	2 cut(s)	75, 1491
BanII	GRGCYC	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	5 cut(s)	811, 1052, 1160, 1245, 1384
BceAI	ACGGC	6 cut(s)	22, 46, 100, 286, 523, 809
BciT130I	CCWGG	1 cut(s)	1149
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	609, 1187
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	1226
BglI	GCCNNNNNGGC	2 cut(s)	21, 84
Bme1390I	CCNGG	2 cut(s)	312, 1149
Bme18I	GGWCC	1 cut(s)	796
BmeT110I	CYCGRG	1 cut(s)	1095
BmgT120I	GGNCC	3 cut(s)	125, 796, 822
BmiI	GGNNCC	6 cut(s)	43, 77, 127, 823, 867, 1493
BmrFI	CCNGG	2 cut(s)	312, 1149
BmrI	ACTGGG	2 cut(s)	1236, 1320
BmsI	GCATC	3 cut(s)	532, 881, 1263
BmuI	ACTGGG	2 cut(s)	1236, 1320
BoxI	GACNNNNGTC	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	1129
BpuEI	CTTGAG	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	1377
BsaJI	CCNNGG	5 cut(s)	19, 31, 71, 82, 121
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	1117, 1147
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 72, 1482
Bse1I	ACTGG	2 cut(s)	1242, 1326
Bse21I	CCTNAGG	1 cut(s)	333
Bse3DI	GCAATG	2 cut(s)	141, 831
Bse8I	GATNNNNATC	1 cut(s)	587
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	1149
BseDI	CCNNGG	5 cut(s)	19, 31, 71, 82, 121
BseGI	GGATG	2 cut(s)	657, 1395
BseJI	GATNNNNATC	1 cut(s)	587
BseLI	CCNNNNNNNGG	3 cut(s)	35, 72, 1482
BseMI	GCAATG	2 cut(s)	141, 831
BseMII	CTCAG	4 cut(s)	347, 682, 905, 1300
BseNI	ACTGG	2 cut(s)	1242, 1326
BseRI	GAGGAG	4 cut(s)	43, 91, 827, 1454
BseX3I	CGGCCG	2 cut(s)	85, 118
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	4 cut(s)	33, 73, 123, 209
Bsh1285I	CGRYCG	2 cut(s)	88, 121
BshFI	GGCC	8 cut(s)	87, 120, 126, 355, 368, 824, 899, 1147
BshNI	GGYRCC	2 cut(s)	75, 1491
BsiEI	CGRYCG	2 cut(s)	88, 121
BsiHKCI	CYCGRG	1 cut(s)	1095
BsiSI	CCGG	4 cut(s)	88, 105, 228, 311
BslI	CCNNNNNNNGG	3 cut(s)	35, 72, 1482
BsmAI	GTCTC	2 cut(s)	609, 1187
BsnI	GGCC	8 cut(s)	87, 120, 126, 355, 368, 824, 899, 1147
BsoBI	CYCGRG	1 cut(s)	1095
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp13I	TCCGGA	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	314, 958, 1396
BspANI	GGCC	8 cut(s)	87, 120, 126, 355, 368, 824, 899, 1147
BspCNI	CTCAG	4 cut(s)	346, 681, 906, 1299
BspEI	TCCGGA	1 cut(s)	227
BspFNI	CGCG	4 cut(s)	33, 73, 123, 209
BspLI	GGNNCC	6 cut(s)	43, 77, 127, 823, 867, 1493
BspPI	GGATC	2 cut(s)	322, 1404
BspT107I	GGYRCC	2 cut(s)	75, 1491
BsrDI	GCAATG	2 cut(s)	141, 831
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	1242, 1326
BssECI	CCNNGG	5 cut(s)	19, 31, 71, 82, 121
BssMI	GATC	3 cut(s)	314, 958, 1396
BssNI	GRCGYC	1 cut(s)	1377
Bst2UI	CCWGG	1 cut(s)	1149
Bst4CI	ACNGT	4 cut(s)	403, 528, 986, 1295
Bst6I	CTCTTC	3 cut(s)	582, 1017, 1065
BstACI	GRCGYC	1 cut(s)	1377
BstAPI	GCANNNNNTGC	1 cut(s)	1282
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	26, 197, 366, 942
BstDEI	CTNAG	5 cut(s)	333, 668, 887, 914, 1286
BstDSI	CCRYGG	4 cut(s)	31, 71, 82, 121
BstF5I	GGATG	2 cut(s)	657, 1395
BstFNI	CGCG	4 cut(s)	33, 73, 123, 209
BstH2I	RGCGCY	1 cut(s)	1226
BstHHI	GCGC	3 cut(s)	211, 831, 1225
BstKTI	GATC	3 cut(s)	317, 961, 1399
BstMAI	GTCTC	2 cut(s)	609, 1187
BstMBI	GATC	3 cut(s)	314, 958, 1396
BstMCI	CGRYCG	2 cut(s)	88, 121
BstNI	CCWGG	1 cut(s)	1149
BstNSI	RCATGY	3 cut(s)	28, 199, 1285
BstPAI	GACNNNNGTC	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	310, 1147
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	4 cut(s)	33, 73, 123, 209
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	1396
BstYI	RGATCY	1 cut(s)	1396
BstZI	CGGCCG	2 cut(s)	85, 118
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	8 cut(s)	87, 120, 126, 355, 368, 824, 899, 1147
BtgI	CCRYGG	4 cut(s)	31, 71, 82, 121
BtsCI	GGATG	2 cut(s)	657, 1395
BtsIMutI	CAGTG	5 cut(s)	408, 911, 991, 1300, 1333
Cac8I	GCNNGC	4 cut(s)	26, 197, 366, 942
CaiI	CAGNNNCTG	1 cut(s)	551
CciNI	GCGGCCGC	1 cut(s)	118
CfoI	GCGC	3 cut(s)	211, 831, 1225
Cfr13I	GGNCC	3 cut(s)	125, 796, 822
Cfr42I	CCGCGG	3 cut(s)	34, 74, 124
CseI	GACGC	1 cut(s)	1366
Csp6I	GTAC	2 cut(s)	322, 1007
CviAII	CATG	9 cut(s)	25, 196, 662, 860, 1030, 1044, 1079, 1282, 1351
CviQI	GTAC	2 cut(s)	322, 1007
DdeI	CTNAG	5 cut(s)	333, 668, 887, 914, 1286
DpnI	GATC	3 cut(s)	316, 960, 1398
DpnII	GATC	3 cut(s)	314, 958, 1396
EaeI	YGGCCR	4 cut(s)	85, 118, 897, 1145
EagI	CGGCCG	2 cut(s)	85, 118
Eam1104I	CTCTTC	3 cut(s)	582, 1017, 1065
EarI	CTCTTC	3 cut(s)	582, 1017, 1065
EclXI	CGGCCG	2 cut(s)	85, 118
Eco24I	GRGCYC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	796
Eco52I	CGGCCG	2 cut(s)	85, 118
Eco57I	CTGAAG	1 cut(s)	698
Eco81I	CCTNAGG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	1095
EcoO109I	RGGNCCY	1 cut(s)	796
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	1 cut(s)	1147
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	9 cut(s)	28, 199, 665, 863, 1033, 1047, 1082, 1285, 1354
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FatI	CATG	9 cut(s)	24, 195, 661, 859, 1029, 1043, 1078, 1281, 1350
FauI	CCCGC	2 cut(s)	38, 503
FokI	GGATG	2 cut(s)	644, 1402
FriOI	GRGCYC	1 cut(s)	251
FspAI	RTGCGCAY	1 cut(s)	830
FspI	TGCGCA	1 cut(s)	830
GlaI	GCGC	3 cut(s)	210, 830, 1224
GsuI	CTGGAG	1 cut(s)	1129
HaeII	RGCGCY	1 cut(s)	1226
HaeIII	GGCC	8 cut(s)	87, 120, 126, 355, 368, 824, 899, 1147
HapII	CCGG	4 cut(s)	88, 105, 228, 311
HgaI	GACGC	1 cut(s)	1366
HhaI	GCGC	3 cut(s)	211, 831, 1225
Hin1I	GRCGYC	1 cut(s)	1377
Hin1II	CATG	9 cut(s)	28, 199, 665, 863, 1033, 1047, 1082, 1285, 1354
Hin6I	GCGC	3 cut(s)	209, 829, 1223
HinP1I	GCGC	3 cut(s)	209, 829, 1223
HinfI	GANTC	5 cut(s)	328, 561, 583, 617, 918
HpaII	CCGG	4 cut(s)	88, 105, 228, 311
HphI	GGTGA	3 cut(s)	769, 1418, 1465
Hpy188I	TCNGA	7 cut(s)	345, 459, 582, 671, 1250, 1289, 1511
Hpy188III	TCNNGA	8 cut(s)	228, 701, 802, 880, 922, 1097, 1123, 1387
Hpy99I	CGWCG	2 cut(s)	307, 1382
HpyAV	CCTTC	4 cut(s)	879, 983, 1122, 1297
HpyCH4III	ACNGT	4 cut(s)	403, 528, 986, 1295
HpyCH4IV	ACGT	3 cut(s)	282, 678, 876
HpyCH4V	TGCA	9 cut(s)	4, 364, 421, 545, 572, 836, 944, 1154, 1276
HpyF3I	CTNAG	5 cut(s)	333, 668, 887, 914, 1286
HpySE526I	ACGT	3 cut(s)	282, 678, 876
Hsp92I	GRCGYC	1 cut(s)	1377
Hsp92II	CATG	9 cut(s)	28, 199, 665, 863, 1033, 1047, 1082, 1285, 1354
HspAI	GCGC	3 cut(s)	209, 829, 1223
Kpn2I	TCCGGA	1 cut(s)	227
KspI	CCGCGG	3 cut(s)	34, 74, 124
Kzo9I	GATC	3 cut(s)	314, 958, 1396
LmnI	GCTCC	3 cut(s)	47, 90, 983
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	3 cut(s)	532, 881, 1263
MaeII	ACGT	3 cut(s)	282, 678, 876
MaeIII	GTNAC	2 cut(s)	623, 674
MalI	GATC	3 cut(s)	316, 960, 1398
MboI	GATC	3 cut(s)	314, 958, 1396
MboII	GAAGA	9 cut(s)	198, 289, 569, 646, 716, 1004, 1034, 1082, 1268
MflI	RGATCY	1 cut(s)	1396
MhlI	GDGCHC	1 cut(s)	251
MlsI	TGGCCA	1 cut(s)	899
MluNI	TGGCCA	1 cut(s)	899
MlyI	GAGTC	3 cut(s)	337, 555, 611
Mox20I	TGGCCA	1 cut(s)	899
MroI	TCCGGA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	899
MseI	TTAA	3 cut(s)	566, 681, 1181
MslI	CAYNNNNRTG	3 cut(s)	173, 681, 1486
Msp20I	TGGCCA	1 cut(s)	899
MspA1I	CMGCKG	4 cut(s)	33, 73, 123, 718
MspI	CCGG	4 cut(s)	88, 105, 228, 311
MspR9I	CCNGG	2 cut(s)	312, 1149
MvaI	CCWGG	1 cut(s)	1149
MvnI	CGCG	4 cut(s)	33, 73, 123, 209
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	3 cut(s)	314, 958, 1396
NlaIII	CATG	9 cut(s)	28, 199, 665, 863, 1033, 1047, 1082, 1285, 1354
NlaIV	GGNNCC	6 cut(s)	43, 77, 127, 823, 867, 1493
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	623, 674
NotI	GCGGCCGC	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	830
NspI	RCATGY	3 cut(s)	28, 199, 1285
OliI	CACNNNNGTG	1 cut(s)	1486
PaeI	GCATGC	2 cut(s)	28, 199
PaeR7I	CTCGAG	1 cut(s)	1095
PfeI	GAWTC	2 cut(s)	583, 918
PleI	GAGTC	3 cut(s)	336, 555, 611
PpsI	GAGTC	3 cut(s)	336, 555, 611
PpuMI	RGGWCCY	1 cut(s)	796
PshAI	GACNNNNGTC	1 cut(s)	621
Psp1406I	AACGTT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	796
Psp6I	CCWGG	1 cut(s)	1147
PspGI	CCWGG	1 cut(s)	1147
PspN4I	GGNNCC	6 cut(s)	43, 77, 127, 823, 867, 1493
PspPI	GGNCC	3 cut(s)	125, 796, 822
PspPPI	RGGWCCY	1 cut(s)	796
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	1396
RsaI	GTAC	2 cut(s)	323, 1008
RsaNI	GTAC	2 cut(s)	322, 1007
RseI	CAYNNNNRTG	3 cut(s)	173, 681, 1486
SacII	CCGCGG	3 cut(s)	34, 74, 124
SaqAI	TTAA	3 cut(s)	566, 681, 1181
Sau3AI	GATC	3 cut(s)	314, 958, 1396
Sau96I	GGNCC	3 cut(s)	125, 796, 822
SchI	GAGTC	3 cut(s)	337, 555, 611
ScrFI	CCNGG	2 cut(s)	312, 1149
SduI	GDGCHC	1 cut(s)	251
SfaNI	GCATC	3 cut(s)	532, 881, 1263
SfcI	CTRYAG	1 cut(s)	10
Sfr274I	CTCGAG	1 cut(s)	1095
Sfr303I	CCGCGG	3 cut(s)	34, 74, 124
SgrBI	CCGCGG	3 cut(s)	34, 74, 124
SinI	GGWCC	1 cut(s)	796
SlaI	CTCGAG	1 cut(s)	1095
SmiMI	CAYNNNNRTG	3 cut(s)	173, 681, 1486
SmlI	CTYRAG	2 cut(s)	619, 1095
SmoI	CTYRAG	2 cut(s)	619, 1095
SphI	GCATGC	2 cut(s)	28, 199
StyD4I	CCNGG	2 cut(s)	310, 1147
TaaI	ACNGT	4 cut(s)	403, 528, 986, 1295
TaiI	ACGT	3 cut(s)	285, 681, 879
TaqI	TCGA	6 cut(s)	261, 533, 923, 961, 1096, 1380
TatI	WGTACW	2 cut(s)	321, 1006
TfiI	GAWTC	2 cut(s)	583, 918
Tru1I	TTAA	3 cut(s)	566, 681, 1181
Tru9I	TTAA	3 cut(s)	566, 681, 1181
TscAI	CASTG	5 cut(s)	408, 918, 991, 1300, 1333
TseFI	GTSAC	2 cut(s)	623, 674
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	2 cut(s)	623, 674
TspDTI	ATGAA	5 cut(s)	481, 584, 646, 1032, 1095
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	5 cut(s)	408, 918, 991, 1300, 1333
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	3 cut(s)	748, 925, 1118
XceI	RCATGY	3 cut(s)	28, 199, 1285
XhoI	CTCGAG	1 cut(s)	1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.