Rorug07G0251400

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004811
Physical Location & Seq
Forward (+)
23264592 .. 23265893
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0251400.1

Sequence Viewer

Length: 1302 bp
ATGCAGCAAGAGTTTCTAATGGAGGAGAGCAGAGGCAATCAACTTCCTGGCCAGAGGTTCTGCCCCATGGACGATGAACTAGTTCTCTTTTACCTCAAGCCGATGTTGAGCGGACAGAACGTGCCCGGAAGAAACCGTGTGGTGTTCGACTGCGACCTCTATGGTCAGCAAGAACCTTGGGAGATATGGGAGGCCTTCAAGACCAGAAGACCACACGACTTGAGGCTCAATAAGGACATTTACTTCTTCACCCAACACAAGAAGATGAGTTCCACAGACAAGCGCGTACGCCGGAATGTTGGAAGTGGCACCTGGAAGGGCGACGACTCCGGCAAGCCAGTACGATCTGTTGGTTCTGGTTGTGTTGTTGGCTTGAAGAAAAGATATACTTACAAGAATGAAGACTCGGTGCACAACGGCTGTTGGATCTTGTACGAGTTCTACCTTGATCGATCACTCAGAGACAAGAAACAAAAGGTGAAAGACTGTGTTCTTTGTCTACTACGAAAGAATGGTGAACCCAAAACCAAGATTGAAAAGAAGAGAAAGCAACGTGAAGAGGAACAGTTTCTTGAAAACAATTATGCCTGTGATGATGGAGAAAACTCGAATAGGGAGCAAGAAGTGTTGCTTGAGCCACAAGCGAAGCGACAACGAACCGTGTCATCCATTGATAATGCACCACCAACAATGCCATCAGAAGATGATGCTGCATTTGCAGCAGAACTAGAAGAGTCATTGGAATGCTCTGAAGATGATAATGCACCCTCATCAGAAGCTGAAGCAGTTGGCCTTCAAGGTGAGGAGAATGGTGGACTCCAAAAATTAGCAGCCGAGGTGCAATCATCAGGGCCTTCATTTGTAGACGATTATGGAATATTTAATCCACTGCCCGAGGAAGATTTTCTCTGGGAGGAAATGGTAGAAGAAATGGGTACGGTAGAGAAGGAAGAACCAGTTCTTAATGGTGTAAGTAGTAATATAGATGTGGCTGAAGATAACGCGGTAAACAGTACCCTTCTTTATGCTCCCACACCATCCATGTCTGTGGCCTCTGATGGTTGCACTGATATGCCATATTTGTATGAAAATTGTTGCATTGATCCATCTGGAAGCAATAATGTTTGTGGTGGATCGATTGGCTTTCAGGATGCTGCATACTGGCTTGAGTCTTTGGTAGAGGTCCCAACTGATGAGCAACAAAAGACAGCCGATGAAGATTGTTCTGATTGGTTGGAGTCAATCAATTTTAGTCCTGAGGAGAACAACTTCCTTTGGAGTGAAATGCAATGGTGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

433

Amino Acids

49.14

Weight (kDa)

4.45

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 148 4.4e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 111
AccI GTMKAC 2 cut(s) 499, 864
AccII CGCG 2 cut(s) 285, 1004
AciI CCGC 2 cut(s) 111, 1004
AclWI GGATC 3 cut(s) 434, 1097, 1141
AcoI YGGCCR 1 cut(s) 49
AcuI CTGAAG 3 cut(s) 771, 801, 1014
AfaI GTAC 5 cut(s) 288, 342, 434, 937, 1015
AgsI TTSAA 5 cut(s) 199, 376, 536, 575, 797
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 2 cut(s) 46, 311
AluBI AGCT 1 cut(s) 779
AluI AGCT 1 cut(s) 779
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 456
Alw44I GTGCAC 1 cut(s) 410
AlwI GGATC 3 cut(s) 434, 1097, 1141
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 1 cut(s) 893
AoxI GGCC 5 cut(s) 49, 192, 790, 851, 1050
ApaLI GTGCAC 1 cut(s) 410
ApeKI GCWGC 5 cut(s) 4, 710, 719, 830, 1154
Asp700I GAANNNNTTC 5 cut(s) 81, 567, 903, 957, 1268
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 851, 1183
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 4 cut(s) 241, 490, 527, 812
AvaI CYCGRG 1 cut(s) 893
AvaII GGWCC 1 cut(s) 1183
AxyI CCTNAGG 1 cut(s) 1257
BaeGI GKGCMC 2 cut(s) 126, 414
BalI TGGCCA 1 cut(s) 51
BanI GGYRCC 1 cut(s) 308
BbsI GAAGAC 2 cut(s) 214, 408
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 5 cut(s) 16, 697, 731, 842, 1141
BccI CCATC 5 cut(s) 590, 703, 1045, 1052, 1114
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 2 cut(s) 48, 313
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 456
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 2 cut(s) 80, 728
BisI GCNGC 5 cut(s) 5, 711, 720, 831, 1155
BlsI GCNGC 5 cut(s) 6, 712, 721, 832, 1156
Bme1390I CCNGG 3 cut(s) 48, 126, 313
Bme18I GGWCC 1 cut(s) 1183
BmeT110I CYCGRG 1 cut(s) 893
BmgT120I GGNCC 2 cut(s) 851, 1183
BmiI GGNNCC 2 cut(s) 310, 1185
BmrFI CCNGG 3 cut(s) 48, 126, 313
BmsI GCATC 2 cut(s) 697, 1141
BpiI GAAGAC 2 cut(s) 214, 408
BpuEI CTTGAG 4 cut(s) 80, 241, 653, 1187
BpuMI CCSGG 1 cut(s) 126
Bsa29I ATCGAT 2 cut(s) 451, 1136
BsaJI CCNNGG 4 cut(s) 66, 176, 834, 894
Bse1I ACTGG 3 cut(s) 338, 956, 1166
Bse21I CCTNAGG 1 cut(s) 1257
Bse3DI GCAATG 1 cut(s) 1295
BseBI CCWGG 2 cut(s) 48, 313
BseCI ATCGAT 2 cut(s) 451, 1136
BseDI CCNNGG 4 cut(s) 66, 176, 834, 894
BseGI GGATG 3 cut(s) 665, 1037, 1156
BseMI GCAATG 1 cut(s) 1295
BseMII CTCAG 2 cut(s) 472, 1248
BseNI ACTGG 3 cut(s) 338, 956, 1166
BseRI GAGGAG 3 cut(s) 38, 818, 1274
BseSI GKGCMC 2 cut(s) 126, 414
BseXI GCAGC 5 cut(s) 16, 697, 731, 842, 1141
Bsh1236I CGCG 2 cut(s) 285, 1004
BshFI GGCC 5 cut(s) 51, 194, 792, 853, 1052
BshNI GGYRCC 1 cut(s) 308
BshVI ATCGAT 2 cut(s) 451, 1136
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 893
BsiSI CCGG 3 cut(s) 126, 292, 330
BsiWI CGTACG 1 cut(s) 286
BslFI GGGAC 1 cut(s) 1169
BsmAI GTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 1169
BsmI GAATGC 1 cut(s) 749
BsnI GGCC 5 cut(s) 51, 194, 792, 853, 1052
BsoBI CYCGRG 1 cut(s) 893
Bsp1286I GDGCHC 2 cut(s) 126, 414
Bsp143I GATC 6 cut(s) 344, 426, 448, 452, 1102, 1133
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 2 cut(s) 111, 1004
BspANI GGCC 5 cut(s) 51, 194, 792, 853, 1052
BspCNI CTCAG 2 cut(s) 471, 1249
BspDI ATCGAT 2 cut(s) 451, 1136
BspFNI CGCG 2 cut(s) 285, 1004
BspLI GGNNCC 2 cut(s) 310, 1185
BspPI GGATC 3 cut(s) 434, 1097, 1141
BspT107I GGYRCC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 1295
BsrI ACTGG 3 cut(s) 338, 956, 1166
BssECI CCNNGG 4 cut(s) 66, 176, 834, 894
BssMI GATC 6 cut(s) 344, 426, 448, 452, 1102, 1133
BssT1I CCWWGG 2 cut(s) 66, 176
Bst2UI CCWGG 2 cut(s) 48, 313
Bst4CI ACNGT 6 cut(s) 137, 488, 567, 661, 940, 1013
Bst6I CTCTTC 3 cut(s) 536, 552, 726
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 458, 1257
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 665, 1037, 1156
BstFNI CGCG 2 cut(s) 285, 1004
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 6 cut(s) 347, 429, 451, 455, 1105, 1136
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 6 cut(s) 344, 426, 448, 452, 1102, 1133
BstMWI GCNNNNNNNGC 2 cut(s) 716, 719
BstNI CCWGG 2 cut(s) 48, 313
BstSCI CCNGG 3 cut(s) 46, 124, 311
BstSLI GKGCMC 2 cut(s) 126, 414
BstUI CGCG 2 cut(s) 285, 1004
BstV1I GCAGC 5 cut(s) 16, 697, 731, 842, 1141
BstV2I GAAGAC 2 cut(s) 214, 408
BstX2I RGATCY 1 cut(s) 426
BstXI CCANNNNNNTGG 1 cut(s) 1048
BstYI RGATCY 1 cut(s) 426
Bsu15I ATCGAT 2 cut(s) 451, 1136
Bsu36I CCTNAGG 1 cut(s) 1257
BsuRI GGCC 5 cut(s) 51, 194, 792, 853, 1052
BsuTUI ATCGAT 2 cut(s) 451, 1136
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 3 cut(s) 665, 1037, 1156
BtsI GCAGTG 1 cut(s) 887
BtsIMutI CAGTG 2 cut(s) 887, 1065
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 1 cut(s) 779
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 851, 1183
ClaI ATCGAT 2 cut(s) 451, 1136
Csp6I GTAC 5 cut(s) 287, 341, 433, 936, 1014
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 2 cut(s) 67, 1042
CviQI GTAC 5 cut(s) 287, 341, 433, 936, 1014
DdeI CTNAG 2 cut(s) 458, 1257
DpnI GATC 6 cut(s) 346, 428, 450, 454, 1104, 1135
DpnII GATC 6 cut(s) 344, 426, 448, 452, 1102, 1133
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 3 cut(s) 536, 552, 726
EarI CTCTTC 3 cut(s) 536, 552, 726
Eco130I CCWWGG 2 cut(s) 66, 176
Eco147I AGGCCT 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 1183
Eco57I CTGAAG 3 cut(s) 771, 801, 1014
Eco81I CCTNAGG 1 cut(s) 1257
Eco88I CYCGRG 1 cut(s) 893
EcoO109I RGGNCCY 2 cut(s) 851, 1183
EcoRII CCWGG 2 cut(s) 46, 311
EcoT14I CCWWGG 2 cut(s) 66, 176
ErhI CCWWGG 2 cut(s) 66, 176
FaeI CATG 2 cut(s) 70, 1045
FalI AAGNNNNNCTT 4 cut(s) 373, 405, 615, 647
FaqI GGGAC 1 cut(s) 1169
FatI CATG 2 cut(s) 66, 1041
FblI GTMKAC 2 cut(s) 499, 864
Fnu4HI GCNGC 5 cut(s) 5, 711, 720, 831, 1155
FokI GGATG 3 cut(s) 652, 1024, 1163
Fsp4HI GCNGC 5 cut(s) 5, 711, 720, 831, 1155
FspBI CTAG 2 cut(s) 80, 728
GlaI GCGC 1 cut(s) 284
GluI GCNGC 5 cut(s) 5, 711, 720, 831, 1155
HaeIII GGCC 5 cut(s) 51, 194, 792, 853, 1052
HapII CCGG 3 cut(s) 126, 292, 330
HhaI GCGC 1 cut(s) 285
Hin1II CATG 2 cut(s) 70, 1045
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 6 cut(s) 326, 404, 734, 816, 1169, 1238
HpaII CCGG 3 cut(s) 126, 292, 330
HphI GGTGA 4 cut(s) 241, 490, 527, 812
Hpy166II GTNNAC 6 cut(s) 412, 500, 518, 815, 865, 1009
Hpy188I TCNGA 6 cut(s) 461, 700, 751, 775, 1057, 1228
Hpy188III TCNNGA 5 cut(s) 199, 572, 1110, 1148, 1256
Hpy8I GTNNAC 6 cut(s) 412, 500, 518, 815, 865, 1009
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 6 cut(s) 205, 310, 803, 864, 940, 1028
HpyCH4III ACNGT 6 cut(s) 137, 488, 567, 661, 940, 1013
HpyCH4IV ACGT 2 cut(s) 120, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 716, 719
HpyF3I CTNAG 2 cut(s) 458, 1257
HpySE526I ACGT 2 cut(s) 120, 553
Hsp92II CATG 2 cut(s) 70, 1045
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 6 cut(s) 344, 426, 448, 452, 1102, 1133
LmnI GCTCC 2 cut(s) 616, 1033
Lsp1109I GCAGC 5 cut(s) 16, 697, 731, 842, 1141
LweI GCATC 2 cut(s) 697, 1141
MaeI CTAG 2 cut(s) 80, 728
MaeII ACGT 2 cut(s) 120, 553
MalI GATC 6 cut(s) 346, 428, 450, 454, 1104, 1135
MbiI CCGCTC 1 cut(s) 111
MboI GATC 6 cut(s) 344, 426, 448, 452, 1102, 1133
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 2 cut(s) 126, 414
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 4 cut(s) 580, 824, 1090, 1246
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 6 cut(s) 320, 398, 743, 810, 1178, 1247
MmeI TCCRAC 3 cut(s) 280, 404, 1215
Mox20I TGGCCA 1 cut(s) 51
MroXI GAANNNNTTC 5 cut(s) 81, 567, 903, 957, 1268
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 882, 963
MslI CAYNNNNRTG 3 cut(s) 742, 1046, 1070
Msp20I TGGCCA 1 cut(s) 51
MspI CCGG 3 cut(s) 126, 292, 330
MspR9I CCNGG 3 cut(s) 48, 126, 313
Mva1269I GAATGC 1 cut(s) 749
MvaI CCWGG 2 cut(s) 48, 313
MvnI CGCG 2 cut(s) 285, 1004
MwoI GCNNNNNNNGC 2 cut(s) 716, 719
NciI CCSGG 1 cut(s) 126
NcoI CCATGG 1 cut(s) 66
NdeII GATC 6 cut(s) 344, 426, 448, 452, 1102, 1133
NlaIII CATG 2 cut(s) 70, 1045
NlaIV GGNNCC 2 cut(s) 310, 1185
NmeAIII GCCGAG 1 cut(s) 859
PceI AGGCCT 1 cut(s) 194
PctI GAATGC 1 cut(s) 749
PdmI GAANNNNTTC 5 cut(s) 81, 567, 903, 957, 1268
Pfl23II CGTACG 1 cut(s) 286
PkrI GCNGC 5 cut(s) 6, 712, 721, 832, 1156
PleI GAGTC 6 cut(s) 320, 398, 742, 810, 1177, 1246
PpsI GAGTC 6 cut(s) 320, 398, 742, 810, 1177, 1246
PpuMI RGGWCCY 1 cut(s) 1183
Psp5II RGGWCCY 1 cut(s) 1183
Psp6I CCWGG 2 cut(s) 46, 311
PspGI CCWGG 2 cut(s) 46, 311
PspLI CGTACG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 310, 1185
PspPI GGNCC 2 cut(s) 851, 1183
PspPPI RGGWCCY 1 cut(s) 1183
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 426
RsaI GTAC 5 cut(s) 288, 342, 434, 937, 1015
RsaNI GTAC 5 cut(s) 287, 341, 433, 936, 1014
RseI CAYNNNNRTG 3 cut(s) 742, 1046, 1070
SaqAI TTAA 2 cut(s) 882, 963
SatI GCNGC 5 cut(s) 5, 711, 720, 831, 1155
Sau3AI GATC 6 cut(s) 344, 426, 448, 452, 1102, 1133
Sau96I GGNCC 2 cut(s) 851, 1183
SchI GAGTC 6 cut(s) 320, 398, 743, 810, 1178, 1247
ScrFI CCNGG 3 cut(s) 48, 126, 313
SduI GDGCHC 2 cut(s) 126, 414
SfaNI GCATC 2 cut(s) 697, 1141
SinI GGWCC 1 cut(s) 1183
SmiMI CAYNNNNRTG 3 cut(s) 742, 1046, 1070
SmlI CTYRAG 4 cut(s) 95, 220, 632, 1166
SmoI CTYRAG 4 cut(s) 95, 220, 632, 1166
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 4 cut(s) 580, 824, 1090, 1246
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 2 cut(s) 111, 1004
SspI AATATT 1 cut(s) 879
SspMI CTAG 2 cut(s) 80, 728
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 46, 124, 311
StyI CCWWGG 2 cut(s) 66, 176
TaaI ACNGT 6 cut(s) 137, 488, 567, 661, 940, 1013
TaiI ACGT 2 cut(s) 123, 556
TaqI TCGA 4 cut(s) 147, 451, 608, 1136
TasI AATT 4 cut(s) 580, 824, 1090, 1246
Tru1I TTAA 2 cut(s) 882, 963
Tru9I TTAA 2 cut(s) 882, 963
TscAI CASTG 2 cut(s) 894, 1072
TseI GCWGC 5 cut(s) 4, 710, 719, 830, 1154
TspDTI ATGAA 5 cut(s) 90, 414, 846, 1101, 1230
TspRI CASTG 2 cut(s) 894, 1072
VneI GTGCAC 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 1183
XmiI GTMKAC 2 cut(s) 499, 864
XmnI GAANNNNTTC 5 cut(s) 81, 567, 903, 957, 1268
XspI CTAG 2 cut(s) 80, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.