Rh7BG384100

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004811
Physical Location & Seq
Reverse (-)
41576491 .. 41583711
7221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG384100.1

Sequence Viewer

Length: 1716 bp
ATGCACGGCTACAGCCGCCTCGGCATGCCCCGCGGCGGCGGCTCCATTACCGCCTCGCCGCCGTCCTCGCCGCGGTGCCGCCACGGCCGGAGCAAGAACTCCTCAGGCGGCGGCCGCGGCCCCAAGCAGCAGAGCATTGCGGAGAGGGCGGTGTTTTTTATCATCTCGGTGGTGTTTAGAAGACGAGGCATGCTTTTATTCGCGCCTCTGTTGTATATTTCCGGAATGTTGTTGTATATGGGCTCTGTGAGCTTCGATGTAGTTAGCTTGAAGAACGTTGTGATTATCAGTAAGCCGTCGCCGCCGGGATCACTGTACAGGAGTCCTCAGGTTTTTCAGAAGCTCTGGCCTTATATGCAGGCCGAGAGTAATCACACTCCTAATTTGTTGATGACAGTGTGGAACTCAAATGTGCATAAAGTTTGGAAGCCTTGTATTCCCAAAGATACTCTGAAAGCAGAATTACCAAAGTCAAATGGTCTATTCATAATTGAAGCGAACGGTGGGTTGAACCAGCAACGGTTGTCGATATGTGATGCAGTTGCTGTGGCTGGACTCTTAAATGCAACTCTTCTGATTCCAATCTTTCATCTAAATAGTGTTTGGAGAGACTCAAGTCACTTCGGGAACATATTTGATGAAGATTTCTTCATCCATGCTCTCAGAAATCACGTTAATGTGGTCAGGGAACTTCCAGAAGATATACTTCAGCGGTTTGACAATAATATAAGCAACATTGTGAATTTGAGAGTGAAAGGTTGGTCAAGTTCAACTCACTATCTCCGTAAGGTCCTCCCGAAGTTAGAGGAGATGGGGGCTGTGCGCATTGCACCTTTTTCAAACAGATTGGCTCATGCAGTTCCTTCAAACATCCAGAGCCTTAGATGCTTAGCCAATTTTGAAGCACTGAGGTTCTCGAATTCAATAAGACTGCTTGCAGATAAAATGGTTGATCGAATGGTCAAAAGTAGCTCCCACAGTGAAGGCAAATATGTTTCAGTACATCTTCGCTTTGAAGAGGACATGGTTGCGTTTTCATGCTGTGAATATGATGGTGGGAAGGAAGAGAAACATGAAATGGATATTGCTCGAGAAAGAAGCTGGAGAGGAAAATTCAGGAGAAGGGGTAGAGTAATTAGGCCAGGTGCAAATCGTGTTGATGGGAAATGCCCTTTAACGCCATTAGAGGTAGGAATGATGCTCAGGGGCATGGGATTTGATAATACCACCTCAGTATACATTGCAGCAGGTAAAATTTATAAAGCAGAAAAGTACATGGCTCCACTTAAACAGATGTTTCCACGCTTGCAAATGAAAGACACACTGGCTACTTCAGAAGAACTTGCTCCTTTTAAGGGCCACTTATCTAGGTTGGCTGCTCTTGATTACACGGTTTGCCTCCATAGTGAAGTGTTTGTCACCACTCAGGGGGGTAATTTTCCCCACTTTTTGATGGGCCACCGGCGCTATCTCTATGGAGGACATTCGAAGACAATCAAGCCTGATAAGCGTAAATTGGCACTGTTGTTTGATAATCCCAGTATCAGATGGGAAGATTTCAAGCGACAGATGCAAGACATGCTCAGACACAGTGACCAGAAGGGTGTTGAAGTGAGAAAACCCAGTGCCTCACTATATACATTTCCCATGCCAGATTGTATGTGTAAGGAAGGAGAAGCTATAGATGAAAACAGTAACACAACAACAGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

571

Amino Acids

64.54

Weight (kDa)

9.67

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 164 - 491 1.3e-99 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
Acc16I TGCGCA 1 cut(s) 824
Acc36I ACCTGC 1 cut(s) 1238
AccB1I GGYRCC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 1236
AccII CGCG 4 cut(s) 33, 73, 117, 203
AccIII TCCGGA 1 cut(s) 221
AclI AACGTT 1 cut(s) 276
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 2 cut(s) 85, 112
AcsI RAATTY 4 cut(s) 742, 919, 1112, 1254
AcuI CTGAAG 2 cut(s) 692, 1317
AfaI GTAC 3 cut(s) 317, 1002, 1274
AfiI CCNNNNNNNGG 4 cut(s) 35, 72, 1355, 1428
AjnI CCWGG 1 cut(s) 1141
AluBI AGCT 6 cut(s) 252, 267, 343, 972, 1101, 1679
AluI AGCT 6 cut(s) 252, 267, 343, 972, 1101, 1679
Alw26I GTCTC 2 cut(s) 603, 1703
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 1089
Aor13HI TCCGGA 1 cut(s) 221
AoxI GGCC 8 cut(s) 85, 112, 118, 347, 360, 1139, 1357, 1456
ApeKI GCWGC 3 cut(s) 127, 1244, 1376
ApoI RAATTY 4 cut(s) 742, 919, 1112, 1254
AspLEI GCGC 3 cut(s) 205, 825, 1467
AspS9I GGNCC 4 cut(s) 119, 790, 1357, 1456
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 1411
AsuII TTCGAA 1 cut(s) 1487
AvaI CYCGRG 1 cut(s) 1089
AvaII GGWCC 1 cut(s) 790
AxyI CCTNAGG 2 cut(s) 103, 327
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 187, 1496
BbvI GCAGC 3 cut(s) 139, 1256, 1363
BccI CCATC 5 cut(s) 805, 1046, 1154, 1447, 1542
BceAI ACGGC 4 cut(s) 22, 46, 100, 280
BciT130I CCWGG 1 cut(s) 1143
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 603, 1703
BfaI CTAG 1 cut(s) 1368
BfmI CTRYAG 2 cut(s) 10, 1680
BfoI RGCGCY 1 cut(s) 1468
BfuAI ACCTGC 1 cut(s) 1238
BglI GCCNNNNNGGC 2 cut(s) 21, 84
BlpI GCTNAGC 1 cut(s) 889
Bme1390I CCNGG 2 cut(s) 306, 1143
Bme18I GGWCC 1 cut(s) 790
BmeT110I CYCGRG 1 cut(s) 1089
BmgT120I GGNCC 4 cut(s) 119, 790, 1357, 1456
BmiI GGNNCC 4 cut(s) 43, 77, 121, 1281
BmrFI CCNGG 2 cut(s) 306, 1143
BmrI ACTGGG 2 cut(s) 1533, 1617
BmsI GCATC 4 cut(s) 526, 875, 1188, 1560
BmuI ACTGGG 2 cut(s) 1533, 1617
BoxI GACNNNNGTC 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 187, 1496
BpmI CTGGAG 1 cut(s) 1123
Bpu10I CCTNAGC 1 cut(s) 1202
Bpu1102I GCTNAGC 1 cut(s) 889
Bpu14I TTCGAA 1 cut(s) 1487
BpuEI CTTGAG 1 cut(s) 598
BpuMI CCSGG 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 581
BsaJI CCNNGG 5 cut(s) 19, 31, 71, 82, 115
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 1111, 1141
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 72, 1355, 1428
Bse118I RCCGGY 1 cut(s) 1461
Bse1I ACTGG 3 cut(s) 1329, 1539, 1623
Bse21I CCTNAGG 2 cut(s) 103, 327
Bse3DI GCAATG 3 cut(s) 135, 825, 1239
Bse8I GATNNNNATC 1 cut(s) 581
BseAI TCCGGA 1 cut(s) 221
BseBI CCWGG 1 cut(s) 1143
BseDI CCNNGG 5 cut(s) 19, 31, 71, 82, 115
BseGI GGATG 2 cut(s) 651, 870
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 4 cut(s) 35, 72, 1355, 1428
BseMI GCAATG 3 cut(s) 135, 825, 1239
BseMII CTCAG 8 cut(s) 117, 341, 676, 899, 1216, 1245, 1439, 1597
BseNI ACTGG 3 cut(s) 1329, 1539, 1623
BseRI GAGGAG 2 cut(s) 91, 821
BseX3I CGGCCG 2 cut(s) 85, 112
BseXI GCAGC 3 cut(s) 139, 1256, 1363
Bsh1236I CGCG 4 cut(s) 33, 73, 117, 203
Bsh1285I CGRYCG 2 cut(s) 88, 115
BshFI GGCC 8 cut(s) 87, 114, 120, 349, 362, 1141, 1359, 1458
BshNI GGYRCC 1 cut(s) 75
BsiEI CGRYCG 2 cut(s) 88, 115
BsiHKCI CYCGRG 1 cut(s) 1089
BsiSI CCGG 4 cut(s) 88, 222, 305, 1462
BslI CCNNNNNNNGG 4 cut(s) 35, 72, 1355, 1428
BsmAI GTCTC 2 cut(s) 603, 1703
BsnI GGCC 8 cut(s) 87, 114, 120, 349, 362, 1141, 1359, 1458
BsoBI CYCGRG 1 cut(s) 1089
Bsp119I TTCGAA 1 cut(s) 1487
Bsp1286I GDGCHC 1 cut(s) 245
Bsp13I TCCGGA 1 cut(s) 221
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 2 cut(s) 308, 952
Bsp1720I GCTNAGC 1 cut(s) 889
BspANI GGCC 8 cut(s) 87, 114, 120, 349, 362, 1141, 1359, 1458
BspCNI CTCAG 8 cut(s) 116, 340, 675, 900, 1215, 1244, 1438, 1596
BspEI TCCGGA 1 cut(s) 221
BspFNI CGCG 4 cut(s) 33, 73, 117, 203
BspLI GGNNCC 4 cut(s) 43, 77, 121, 1281
BspMI ACCTGC 1 cut(s) 1238
BspPI GGATC 1 cut(s) 316
BspT104I TTCGAA 1 cut(s) 1487
BspT107I GGYRCC 1 cut(s) 75
BsrDI GCAATG 3 cut(s) 135, 825, 1239
BsrFI RCCGGY 1 cut(s) 1461
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 3 cut(s) 1329, 1539, 1623
BssAI RCCGGY 1 cut(s) 1461
BssECI CCNNGG 5 cut(s) 19, 31, 71, 82, 115
BssMI GATC 2 cut(s) 308, 952
BssNAI GTATAC 1 cut(s) 1237
Bst1107I GTATAC 1 cut(s) 1237
Bst2UI CCWGG 1 cut(s) 1143
Bst4CI ACNGT 9 cut(s) 315, 397, 503, 522, 980, 1393, 1524, 1592, 1694
Bst6I CTCTTC 3 cut(s) 576, 1011, 1059
BstAPI GCANNNNNTGC 1 cut(s) 1579
BstAUI TGTACA 1 cut(s) 315
BstBI TTCGAA 1 cut(s) 1487
BstC8I GCNNGC 5 cut(s) 26, 191, 360, 936, 1307
BstDSI CCRYGG 4 cut(s) 31, 71, 82, 115
BstF5I GGATG 2 cut(s) 651, 870
BstFNI CGCG 4 cut(s) 33, 73, 117, 203
BstH2I RGCGCY 1 cut(s) 1468
BstHHI GCGC 3 cut(s) 205, 825, 1467
BstKTI GATC 2 cut(s) 311, 955
BstMAI GTCTC 2 cut(s) 603, 1703
BstMBI GATC 2 cut(s) 308, 952
BstMCI CGRYCG 2 cut(s) 88, 115
BstNI CCWGG 1 cut(s) 1143
BstNSI RCATGY 3 cut(s) 28, 193, 1582
BstPAI GACNNNNGTC 1 cut(s) 615
BstSCI CCNGG 2 cut(s) 304, 1141
BstSFI CTRYAG 2 cut(s) 10, 1680
BstUI CGCG 4 cut(s) 33, 73, 117, 203
BstV1I GCAGC 3 cut(s) 139, 1256, 1363
BstV2I GAAGAC 2 cut(s) 187, 1496
BstZ17I GTATAC 1 cut(s) 1237
BstZI CGGCCG 2 cut(s) 85, 112
Bsu36I CCTNAGG 2 cut(s) 103, 327
BsuRI GGCC 8 cut(s) 87, 114, 120, 349, 362, 1141, 1359, 1458
BtgI CCRYGG 4 cut(s) 31, 71, 82, 115
BtsCI GGATG 2 cut(s) 651, 870
BtsIMutI CAGTG 8 cut(s) 311, 402, 905, 985, 1322, 1520, 1597, 1630
BveI ACCTGC 1 cut(s) 1238
Cac8I GCNNGC 5 cut(s) 26, 191, 360, 936, 1307
CaiI CAGNNNCTG 1 cut(s) 545
CciNI GCGGCCGC 1 cut(s) 112
CfoI GCGC 3 cut(s) 205, 825, 1467
Cfr10I RCCGGY 1 cut(s) 1461
Cfr13I GGNCC 4 cut(s) 119, 790, 1357, 1456
Cfr42I CCGCGG 3 cut(s) 34, 74, 118
Csp6I GTAC 3 cut(s) 316, 1001, 1273
CviQI GTAC 3 cut(s) 316, 1001, 1273
DpnI GATC 2 cut(s) 310, 954
DpnII GATC 2 cut(s) 308, 952
EaeI YGGCCR 2 cut(s) 85, 112
EagI CGGCCG 2 cut(s) 85, 112
Eam1104I CTCTTC 3 cut(s) 576, 1011, 1059
EarI CTCTTC 3 cut(s) 576, 1011, 1059
EclXI CGGCCG 2 cut(s) 85, 112
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 790
Eco52I CGGCCG 2 cut(s) 85, 112
Eco57I CTGAAG 2 cut(s) 692, 1317
Eco81I CCTNAGG 2 cut(s) 103, 327
Eco88I CYCGRG 1 cut(s) 1089
EcoO109I RGGNCCY 1 cut(s) 790
EcoRI GAATTC 1 cut(s) 919
EcoRII CCWGG 1 cut(s) 1141
EcoT38I GRGCYC 1 cut(s) 245
FalI AAGNNNNNCTT 4 cut(s) 690, 722, 1346, 1378
FauI CCCGC 1 cut(s) 38
FblI GTMKAC 1 cut(s) 1236
FokI GGATG 2 cut(s) 638, 857
FriOI GRGCYC 1 cut(s) 245
FspAI RTGCGCAY 1 cut(s) 824
FspBI CTAG 1 cut(s) 1368
FspI TGCGCA 1 cut(s) 824
GlaI GCGC 3 cut(s) 204, 824, 1466
GsuI CTGGAG 1 cut(s) 1123
HaeII RGCGCY 1 cut(s) 1468
HaeIII GGCC 8 cut(s) 87, 114, 120, 349, 362, 1141, 1359, 1458
HapII CCGG 4 cut(s) 88, 222, 305, 1462
HhaI GCGC 3 cut(s) 205, 825, 1467
Hin6I GCGC 3 cut(s) 203, 823, 1465
HinP1I GCGC 3 cut(s) 203, 823, 1465
HinfI GANTC 4 cut(s) 322, 555, 577, 611
HpaII CCGG 4 cut(s) 88, 222, 305, 1462
HphI GGTGA 1 cut(s) 1411
Hpy166II GTNNAC 1 cut(s) 1237
Hpy188I TCNGA 7 cut(s) 339, 453, 576, 665, 1336, 1547, 1586
Hpy188III TCNNGA 9 cut(s) 222, 625, 695, 796, 874, 916, 1091, 1117, 1382
Hpy8I GTNNAC 1 cut(s) 1237
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 6 cut(s) 873, 977, 1054, 1116, 1594, 1664
HpyCH4III ACNGT 9 cut(s) 315, 397, 503, 522, 980, 1393, 1524, 1592, 1694
HpyCH4IV ACGT 2 cut(s) 276, 672
HpySE526I ACGT 2 cut(s) 276, 672
HspAI GCGC 3 cut(s) 203, 823, 1465
Kpn2I TCCGGA 1 cut(s) 221
KspI CCGCGG 3 cut(s) 34, 74, 118
Kzo9I GATC 2 cut(s) 308, 952
LmnI GCTCC 5 cut(s) 47, 90, 977, 1285, 1351
Lsp1109I GCAGC 3 cut(s) 139, 1256, 1363
LweI GCATC 4 cut(s) 526, 875, 1188, 1560
MaeI CTAG 1 cut(s) 1368
MaeII ACGT 2 cut(s) 276, 672
MaeIII GTNAC 4 cut(s) 617, 1417, 1592, 1694
MalI GATC 2 cut(s) 310, 954
MboI GATC 2 cut(s) 308, 952
MhlI GDGCHC 1 cut(s) 245
MlyI GAGTC 3 cut(s) 331, 549, 605
MroI TCCGGA 1 cut(s) 221
MseI TTAA 5 cut(s) 560, 675, 1175, 1287, 1353
MslI CAYNNNNRTG 2 cut(s) 167, 675
MspA1I CMGCKG 4 cut(s) 33, 73, 117, 712
MspI CCGG 4 cut(s) 88, 222, 305, 1462
MspR9I CCNGG 2 cut(s) 306, 1143
MvaI CCWGG 1 cut(s) 1143
MvnI CGCG 4 cut(s) 33, 73, 117, 203
NciI CCSGG 1 cut(s) 306
NdeII GATC 2 cut(s) 308, 952
NlaIV GGNNCC 4 cut(s) 43, 77, 121, 1281
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 3 cut(s) 617, 1417, 1592
NotI GCGGCCGC 1 cut(s) 112
NsbI TGCGCA 1 cut(s) 824
NspI RCATGY 3 cut(s) 28, 193, 1582
NspV TTCGAA 1 cut(s) 1487
PaeI GCATGC 2 cut(s) 28, 193
PaeR7I CTCGAG 1 cut(s) 1089
PfeI GAWTC 1 cut(s) 577
PleI GAGTC 3 cut(s) 330, 549, 605
PpsI GAGTC 3 cut(s) 330, 549, 605
PpuMI RGGWCCY 1 cut(s) 790
PshAI GACNNNNGTC 1 cut(s) 615
PsiI TTATAA 1 cut(s) 1260
Psp1406I AACGTT 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 1 cut(s) 1141
PspGI CCWGG 1 cut(s) 1141
PspN4I GGNNCC 4 cut(s) 43, 77, 121, 1281
PspPI GGNCC 4 cut(s) 119, 790, 1357, 1456
PspPPI RGGWCCY 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 545
RsaI GTAC 3 cut(s) 317, 1002, 1274
RsaNI GTAC 3 cut(s) 316, 1001, 1273
RseI CAYNNNNRTG 2 cut(s) 167, 675
SacII CCGCGG 3 cut(s) 34, 74, 118
SaqAI TTAA 5 cut(s) 560, 675, 1175, 1287, 1353
Sau3AI GATC 2 cut(s) 308, 952
Sau96I GGNCC 4 cut(s) 119, 790, 1357, 1456
SchI GAGTC 3 cut(s) 331, 549, 605
ScrFI CCNGG 2 cut(s) 306, 1143
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 4 cut(s) 526, 875, 1188, 1560
SfcI CTRYAG 2 cut(s) 10, 1680
Sfr274I CTCGAG 1 cut(s) 1089
Sfr303I CCGCGG 3 cut(s) 34, 74, 118
SfuI TTCGAA 1 cut(s) 1487
SgrAI CRCCGGYG 1 cut(s) 1461
SgrBI CCGCGG 3 cut(s) 34, 74, 118
SinI GGWCC 1 cut(s) 790
SlaI CTCGAG 1 cut(s) 1089
SmiMI CAYNNNNRTG 2 cut(s) 167, 675
SmlI CTYRAG 2 cut(s) 613, 1089
SmoI CTYRAG 2 cut(s) 613, 1089
SphI GCATGC 2 cut(s) 28, 193
SspMI CTAG 1 cut(s) 1368
StyD4I CCNGG 2 cut(s) 304, 1141
TaaI ACNGT 9 cut(s) 315, 397, 503, 522, 980, 1393, 1524, 1592, 1694
TaiI ACGT 2 cut(s) 279, 675
TaqI TCGA 6 cut(s) 255, 527, 917, 955, 1090, 1487
TatI WGTACW 3 cut(s) 315, 1000, 1272
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 5 cut(s) 560, 675, 1175, 1287, 1353
Tru9I TTAA 5 cut(s) 560, 675, 1175, 1287, 1353
TscAI CASTG 8 cut(s) 318, 402, 912, 985, 1329, 1527, 1597, 1630
TseFI GTSAC 3 cut(s) 617, 1417, 1592
TseI GCWGC 3 cut(s) 127, 1244, 1376
Tsp45I GTSAC 3 cut(s) 617, 1417, 1592
TspDTI ATGAA 8 cut(s) 475, 578, 640, 654, 1026, 1089, 1328, 1701
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 8 cut(s) 318, 402, 912, 985, 1329, 1527, 1597, 1630
VpaK11BI GGWCC 1 cut(s) 790
XapI RAATTY 4 cut(s) 742, 919, 1112, 1254
XceI RCATGY 3 cut(s) 28, 193, 1582
XhoI CTCGAG 1 cut(s) 1089
XmiI GTMKAC 1 cut(s) 1236
XspI CTAG 1 cut(s) 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.