RLG00000003330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018162
Physical Location & Seq
Reverse (-)
47185418 .. 47187053
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003330

Sequence Viewer

Length: 306 bp
ATGAAGAGGCGGCGGCGACTCCGGATCCGAAAGATTGGGCATGGTGGCCTGGCCACCAGTGCGGCGTTCCTTTCAAAGATGTGGTTGTCAGCGCAGCATCATCGATCGTGGACTTGCAGGAGCAATGGTGGAGGGCGGCGACTTCCGAATGATGGTGCTCAAATCCAATGTCAGAGCAAAGCAAATTTGCTCAGCATGAATGGGCTTCCTCTCTCAGTCAAGCTTGGGGAGCAGCTTAAGTTTCTTCCTGATCAAATGAAATATATGTTCAACATAAAAGGGGCAAGAACTTTCCACTTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.51

Weight (kDa)

11.78

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018162)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0141841 RchiOBHm_Chr3g0494761
rosa_laevigata RLG00000003330 RLG00000008543 RLG00000013377
rosa_multiflora Rmu_sc0005167.1_g000016
rosa_roxburghii Rroxscaffold_2G00113890
rosa_samantha Rh1AG474200 Rh5BG541900 Rh6BG134800
rosa_wichuraiana Rw6G043620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 4 cut(s) 10, 13, 62, 136
AclWI GGATC 2 cut(s) 19, 32
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 184
AdeI CACNNNGTG 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 152
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 2 cut(s) 75, 271
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 2 cut(s) 223, 235
AluI AGCT 2 cut(s) 223, 235
Alw21I GWGCWC 1 cut(s) 160
AlwI GGATC 2 cut(s) 19, 32
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 46, 51
ApeKI GCWGC 2 cut(s) 94, 232
ApoI RAATTY 1 cut(s) 184
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspLEI GCGC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 106, 244
BccI CCATC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 250
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 6 cut(s) 11, 14, 63, 95, 137, 233
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 6 cut(s) 12, 15, 64, 96, 138, 234
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 130
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 2 cut(s) 205, 228
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 106, 244
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 48, 53
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 152
BsnI GGCC 2 cut(s) 48, 53
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 24, 104, 250
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 4 cut(s) 10, 13, 62, 136
BspANI GGCC 2 cut(s) 48, 53
BspCNI CTCAG 2 cut(s) 204, 227
BspDI ATCGAT 1 cut(s) 103
BspEI TCCGGA 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 2 cut(s) 19, 32
BspTI CTTAAG 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 57
BssMI GATC 3 cut(s) 24, 104, 250
Bst2UI CCWGG 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 191, 214
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 3 cut(s) 27, 107, 253
BstMBI GATC 3 cut(s) 24, 104, 250
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 59, 229
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 106, 244
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 103
BsuRI GGCC 2 cut(s) 48, 53
BsuTUI ATCGAT 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 64
CfoI GCGC 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 103
CviAII CATG 2 cut(s) 41, 196
CviJI RGCY 5 cut(s) 48, 53, 205, 223, 235
CviKI_1 RGCY 5 cut(s) 48, 53, 205, 223, 235
DdeI CTNAG 2 cut(s) 191, 214
DpnI GATC 3 cut(s) 26, 106, 252
DpnII GATC 3 cut(s) 24, 104, 250
DraIII CACNNNGTG 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 44, 199
FaiI YATR 5 cut(s) 42, 197, 264, 266, 275
FatI CATG 2 cut(s) 40, 195
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 6 cut(s) 11, 14, 63, 95, 137, 233
Fsp4HI GCNGC 6 cut(s) 11, 14, 63, 95, 137, 233
GlaI GCGC 1 cut(s) 93
GluI GCNGC 6 cut(s) 11, 14, 63, 95, 137, 233
HaeIII GGCC 2 cut(s) 48, 53
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 44, 199
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 3 cut(s) 29, 147, 174
Hpy188III TCNNGA 2 cut(s) 22, 248
Hpy8I GTNNAC 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 229
HpyF3I CTNAG 2 cut(s) 191, 214
Hsp92II CATG 2 cut(s) 44, 199
HspAI GCGC 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 24, 104, 250
LmnI GCTCC 2 cut(s) 120, 229
LpnPI CCDG 6 cut(s) 35, 35, 62, 70, 103, 261
Lsp1109I GCAGC 2 cut(s) 106, 244
LweI GCATC 1 cut(s) 106
MalI GATC 3 cut(s) 26, 106, 252
MboI GATC 3 cut(s) 24, 104, 250
MboII GAAGA 2 cut(s) 16, 236
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 1 cut(s) 184
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 12
MnlI CCTC 2 cut(s) 125, 219
Mox20I TGGCCA 1 cut(s) 53
MroI TCCGGA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 53
MseI TTAA 1 cut(s) 237
Msp20I TGGCCA 1 cut(s) 53
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 59, 229
NdeII GATC 3 cut(s) 24, 104, 250
NlaIII CATG 2 cut(s) 44, 199
NlaIV GGNNCC 1 cut(s) 26
PkrI GCNGC 6 cut(s) 12, 15, 64, 96, 138, 234
Ple19I CGATCG 1 cut(s) 107
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 24
PvuI CGATCG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 6 cut(s) 11, 14, 63, 95, 137, 233
Sau3AI GATC 3 cut(s) 24, 104, 250
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 160
SetI ASST 2 cut(s) 225, 237
SfaNI GCATC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 184
SsiI CCGC 4 cut(s) 10, 13, 62, 136
StyD4I CCNGG 1 cut(s) 48
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 184
TauI GCSGC 4 cut(s) 13, 16, 65, 139
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 94, 232
TspDTI ATGAA 3 cut(s) 17, 212, 272
TspRI CASTG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.