Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005167.1

Orthogroup ID

OG0018162

Physical Location & Seq

Genomic Coordinates Reverse (-)

61533 .. 63541

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005167.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgaatcaagtaaggtttgaggagaatgtggcagatttgttcaccaaatcattgcctaaggacacatttgagaaacatgagaaaaacataagaatgcgaagactttccaagctccctagattaatctggacttcttccccgagtggtggtgcattggcgagggcttcaccggagcgaggtccagcagtgcatctcgatatagtggctttggtcactttgtcttgtggcggtggggctggcgatgaagaggcggtggggctagcgatgaagaggcggcgacgattcccgatccgaaagattgggcatggtggcctggccaccagtgcggcgttcctttcaaacatgtggtctactttgttagaactggcggtggccttggtgttggctgtgataatcggggctatggactgtggccacagagtccaagatttggaagcagcagacgacgaggagtccaaagcagcagaggagagcaaccaggagcgtgagtacgatgaaaatggttgtctcgtgatttgtaggctttcgcataagaggaaggtgacagttcaagtgttcaaggggaaaccattggtgtcgttgagggagttttttactaaagaaggcaaggatctccctacttctaaaggtataccctatttaatttttctattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

218

Amino Acids

24.09

Weight (kDa)

8.9

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141841 RchiOBHm_Chr3g0494761
rosa_laevigata	RLG00000003330 RLG00000008543 RLG00000013377
rosa_multiflora	Rmu_sc0005167.1_g000016
rosa_roxburghii	Rroxscaffold_2G00113890
rosa_samantha	Rh1AG474200 Rh5BG541900 Rh6BG134800
rosa_wichuraiana	Rw6G043620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccI	GTMKAC	2 cut(s)	350, 631
AciI	CCGC	5 cut(s)	228, 251, 274, 326, 368
AclWI	GGATC	2 cut(s)	283, 618
AcoI	YGGCCR	2 cut(s)	315, 412
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	3 cut(s)	146, 176, 430
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	339, 551, 559
AhdI	GACNNNNNGTC	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	312, 477
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	2 cut(s)	283, 618
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	4 cut(s)	310, 315, 372, 412
ApeKI	GCWGC	2 cut(s)	437, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AseI	ATTAAT	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	34, 159, 553
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	2 cut(s)	317, 414
BauI	CACGAG	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	449, 473
BciT130I	CCWGG	2 cut(s)	314, 479
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	117, 260
BisI	GCNGC	4 cut(s)	275, 327, 438, 462
BlsI	GCNGC	4 cut(s)	276, 328, 439, 463
Bme1390I	CCNGG	2 cut(s)	314, 479
Bme18I	GGWCC	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	2 cut(s)	314, 479
BmsI	GCATC	1 cut(s)	199
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 176, 430
Bse1I	ACTGG	2 cut(s)	321, 369
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	314, 479
BseDI	CCNNGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	146, 176, 430
BseMI	GCAATG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	321, 369
BseRI	GAGGAG	3 cut(s)	35, 464, 482
BseXI	GCAGC	2 cut(s)	449, 473
BshFI	GGCC	4 cut(s)	312, 317, 374, 414
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	146, 176, 430
BsmAI	GTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	4 cut(s)	312, 317, 374, 414
BsoBI	CYCGRG	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	288, 610
BspACI	CCGC	5 cut(s)	228, 251, 274, 326, 368
BspANI	GGCC	4 cut(s)	312, 317, 374, 414
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	283, 618
BsrDI	GCAATG	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	321, 369
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	288, 610
BssNAI	GTATAC	1 cut(s)	632
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	375
Bst1107I	GTATAC	1 cut(s)	632
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	314, 479
Bst4CI	ACNGT	2 cut(s)	410, 547
Bst6I	CTCTTC	2 cut(s)	240, 263
BstC8I	GCNNGC	2 cut(s)	238, 261
BstDEI	CTNAG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	291, 613
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	2 cut(s)	288, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	314, 479
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	312, 477
BstV1I	GCAGC	2 cut(s)	449, 473
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BstZ17I	GTATAC	1 cut(s)	632
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	312, 317, 374, 414
BtgZI	GCGATG	2 cut(s)	255, 278
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 328
Cac8I	GCNNGC	2 cut(s)	238, 261
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	3 cut(s)	77, 305, 343
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	290, 612
DpnII	GATC	2 cut(s)	288, 610
DriI	GACNNNNNGTC	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	315, 412
Eam1104I	CTCTTC	2 cut(s)	240, 263
Eam1105I	GACNNNNNGTC	1 cut(s)	451
EarI	CTCTTC	2 cut(s)	240, 263
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	312, 477
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	80, 308, 346
FaiI	YATR	9 cut(s)	78, 89, 200, 306, 344, 404, 531, 632, 655
FatI	CATG	3 cut(s)	76, 304, 342
FblI	GTMKAC	2 cut(s)	350, 631
Fnu4HI	GCNGC	4 cut(s)	275, 327, 438, 462
Fsp4HI	GCNGC	4 cut(s)	275, 327, 438, 462
FspBI	CTAG	2 cut(s)	117, 260
GluI	GCNGC	4 cut(s)	275, 327, 438, 462
HaeIII	GGCC	4 cut(s)	312, 317, 374, 414
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	3 cut(s)	80, 308, 346
HinfI	GANTC	4 cut(s)	4, 282, 420, 452
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	3 cut(s)	34, 159, 553
Hpy166II	GTNNAC	3 cut(s)	42, 351, 632
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	4 cut(s)	127, 194, 286, 511
Hpy8I	GTNNAC	3 cut(s)	42, 351, 632
Hpy99I	CGWCG	2 cut(s)	282, 449
HpyAV	CCTTC	2 cut(s)	532, 596
HpyCH4III	ACNGT	2 cut(s)	410, 547
HpyCH4V	TGCA	2 cut(s)	152, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	80, 308, 346
Kzo9I	GATC	2 cut(s)	288, 610
LmnI	GCTCC	3 cut(s)	117, 172, 481
Lsp1109I	GCAGC	2 cut(s)	449, 473
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	117, 260
MaeIII	GTNAC	2 cut(s)	211, 541
MalI	GATC	2 cut(s)	290, 612
MboI	GATC	2 cut(s)	288, 610
MboII	GAAGA	4 cut(s)	111, 126, 257, 280
MflI	RGATCY	1 cut(s)	610
MlsI	TGGCCA	2 cut(s)	317, 414
MluCI	AATT	1 cut(s)	642
MluNI	TGGCCA	2 cut(s)	317, 414
MlyI	GAGTC	2 cut(s)	429, 461
MnlI	CCTC	9 cut(s)	13, 153, 170, 241, 264, 442, 460, 528, 576
Mox20I	TGGCCA	2 cut(s)	317, 414
MroXI	GAANNNNTTC	1 cut(s)	103
MscI	TGGCCA	2 cut(s)	317, 414
MseI	TTAA	2 cut(s)	122, 641
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	2 cut(s)	317, 414
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	314, 479
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	2 cut(s)	314, 479
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	2 cut(s)	288, 610
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	80, 308, 346
NmuCI	GTSAC	2 cut(s)	211, 541
NspI	RCATGY	1 cut(s)	346
PciI	ACATGT	1 cut(s)	342
PctI	GAATGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	4, 282
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	276, 328, 439, 463
PleI	GAGTC	2 cut(s)	428, 460
PpsI	GAGTC	2 cut(s)	428, 460
PscI	ACATGT	1 cut(s)	342
PshBI	ATTAAT	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	312, 477
PspGI	CCWGG	2 cut(s)	312, 477
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	122, 641
SatI	GCNGC	4 cut(s)	275, 327, 438, 462
Sau3AI	GATC	2 cut(s)	288, 610
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	2 cut(s)	429, 461
ScrFI	CCNGG	2 cut(s)	314, 479
SetI	ASST	5 cut(s)	17, 114, 181, 543, 631
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	642
SsiI	CCGC	5 cut(s)	228, 251, 274, 326, 368
SspMI	CTAG	2 cut(s)	117, 260
StyD4I	CCNGG	2 cut(s)	312, 477
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	410, 547
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	642
TauI	GCSGC	2 cut(s)	277, 329
TfiI	GAWTC	2 cut(s)	4, 282
Tru1I	TTAA	2 cut(s)	122, 641
Tru9I	TTAA	2 cut(s)	122, 641
TscAI	CASTG	2 cut(s)	192, 328
TseFI	GTSAC	2 cut(s)	211, 541
TseI	GCWGC	2 cut(s)	437, 461
Tsp45I	GTSAC	2 cut(s)	211, 541
TspDTI	ATGAA	4 cut(s)	17, 258, 281, 510
TspRI	CASTG	2 cut(s)	192, 328
Van91I	CCANNNNNTGG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	122
XceI	RCATGY	1 cut(s)	346
XmiI	GTMKAC	2 cut(s)	350, 631
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	2 cut(s)	117, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.