Rw6G043620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018162
Physical Location & Seq
Reverse (-)
66871771 .. 66873483
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043620.1

Sequence Viewer

Length: 318 bp
ATGGTGGCTTTGGCCACTTTTTCTTGTGGCTGTGGGGCTGGCGATGAAGAGGCGGTGGGGCTAGCGATGAAGAGGCGGCGGCGACTTCGGATCCGAAAGATTGGGCATGGTGGCCTGGCCACCAGTGCGGCGTTCCTTTCAAAGATGTGGTCTGCTTTGTTAGAACTGGCGGTGGCCTTGGTGTTGGCTGTGTTAATCGAGGCGATGGATTGTGGGCTTCCTCTCTCAGTCAAGCTTGGGGAGCAGCTTAAGTTTCTTCCTGATCAAATGAAAGATATGTTCAACATAAAAGGGGCAAGAACTTTCCACTTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.38

Weight (kDa)

9.5

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018162)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0141841 RchiOBHm_Chr3g0494761
rosa_laevigata RLG00000003330 RLG00000008543 RLG00000013377
rosa_multiflora Rmu_sc0005167.1_g000016
rosa_roxburghii Rroxscaffold_2G00113890
rosa_samantha Rh1AG474200 Rh5BG541900 Rh6BG134800
rosa_wichuraiana Rw6G043620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 53, 76, 79, 128, 170
AclWI GGATC 2 cut(s) 85, 98
AcoI YGGCCR 2 cut(s) 12, 117
AdeI CACNNNGTG 1 cut(s) 313
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 2 cut(s) 141, 283
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 235, 247
AluI AGCT 2 cut(s) 235, 247
AlwI GGATC 2 cut(s) 85, 98
AoxI GGCC 4 cut(s) 12, 112, 117, 174
ApeKI GCWGC 1 cut(s) 244
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AsuNHI GCTAGC 1 cut(s) 61
BalI TGGCCA 2 cut(s) 14, 119
BamHI GGATCC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 262
BfaI CTAG 1 cut(s) 62
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 4 cut(s) 77, 80, 129, 245
BlsI GCNGC 4 cut(s) 78, 81, 130, 246
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 116
BmtI GCTAGC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 123, 171
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 123, 171
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 4 cut(s) 14, 114, 119, 176
BsnI GGCC 4 cut(s) 14, 114, 119, 176
Bsp143I GATC 2 cut(s) 90, 262
BspACI CCGC 5 cut(s) 53, 76, 79, 128, 170
BspANI GGCC 4 cut(s) 14, 114, 119, 176
BspCNI CTCAG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 85, 98
BspTI CTTAAG 1 cut(s) 248
BsrI ACTGG 2 cut(s) 123, 171
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 2 cut(s) 90, 262
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 42, 65
BstAFI CTTAAG 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 40, 63
BstDEI CTNAG 1 cut(s) 226
BstKTI GATC 2 cut(s) 93, 265
BstMBI GATC 2 cut(s) 90, 262
BstMWI GCNNNNNNNGC 2 cut(s) 125, 241
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 4 cut(s) 14, 114, 119, 176
BtgZI GCGATG 3 cut(s) 57, 80, 218
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 40, 63
CviAII CATG 1 cut(s) 107
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 92, 264
DpnII GATC 2 cut(s) 90, 262
DraIII CACNNNGTG 1 cut(s) 313
EaeI YGGCCR 2 cut(s) 12, 117
Eam1104I CTCTTC 2 cut(s) 42, 65
EarI CTCTTC 2 cut(s) 42, 65
Eco130I CCWWGG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 110
FaiI YATR 3 cut(s) 108, 278, 287
FatI CATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 4 cut(s) 77, 80, 129, 245
Fsp4HI GCNGC 4 cut(s) 77, 80, 129, 245
FspBI CTAG 1 cut(s) 62
GluI GCNGC 4 cut(s) 77, 80, 129, 245
HaeIII GGCC 4 cut(s) 14, 114, 119, 176
Hin1II CATG 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 90, 95
Hpy188III TCNNGA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 241
HpyF3I CTNAG 1 cut(s) 226
Hsp92II CATG 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 90, 262
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 6 cut(s) 24, 101, 128, 136, 152, 273
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 1 cut(s) 62
MalI GATC 2 cut(s) 92, 264
MboI GATC 2 cut(s) 90, 262
MboII GAAGA 3 cut(s) 59, 82, 248
MflI RGATCY 1 cut(s) 90
MlsI TGGCCA 2 cut(s) 14, 119
MluNI TGGCCA 2 cut(s) 14, 119
MnlI CCTC 4 cut(s) 43, 66, 193, 231
Mox20I TGGCCA 2 cut(s) 14, 119
MscI TGGCCA 2 cut(s) 14, 119
MseI TTAA 2 cut(s) 194, 249
Msp20I TGGCCA 2 cut(s) 14, 119
MspCI CTTAAG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 125, 241
NdeII GATC 2 cut(s) 90, 262
NheI GCTAGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 92
PkrI GCNGC 4 cut(s) 78, 81, 130, 246
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 90
SaqAI TTAA 2 cut(s) 194, 249
SatI GCNGC 4 cut(s) 77, 80, 129, 245
Sau3AI GATC 2 cut(s) 90, 262
ScrFI CCNGG 1 cut(s) 116
SetI ASST 2 cut(s) 237, 249
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SsiI CCGC 5 cut(s) 53, 76, 79, 128, 170
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 198
TauI GCSGC 3 cut(s) 79, 82, 131
Tru1I TTAA 2 cut(s) 194, 249
Tru9I TTAA 2 cut(s) 194, 249
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 60, 83, 284
TspRI CASTG 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 248
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.