Rh5BG541900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018162
Physical Location & Seq
Forward (+)
85947200 .. 85947499
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG541900.1

Sequence Viewer

Length: 300 bp
ATGGTGTTCTTCTCTCCTATTTGTGAATCTTCGTCGCCATTCTCTTCTGGATTATTCAAGTTCCTGAATTTCCTCATCTGGGGCTCATTCAATTTTTTCTGTTCTTCAATCTTCTGGGCTGGTGATGAAGAGGCGGTGGGGCTAGCGATGAAGAGGCGGCGGAGACTCCGGATCCAAAAGATTGGGCATGGTGGCCTGGCCACCAGTGCGGCGTTCCTTTCAAAGATGTGGTCTGCTTTGTTAGAACTGGCGGTGGCCTTGGTGTTGGCTGTGTTAATCGAGGCGATGGATTGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

8.61

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018162)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0141841 RchiOBHm_Chr3g0494761
rosa_laevigata RLG00000003330 RLG00000008543 RLG00000013377
rosa_multiflora Rmu_sc0005167.1_g000016
rosa_roxburghii Rroxscaffold_2G00113890
rosa_samantha Rh1AG474200 Rh5BG541900 Rh6BG134800
rosa_wichuraiana Rw6G043620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 5 cut(s) 134, 157, 160, 209, 251
AclWI GGATC 2 cut(s) 166, 179
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 4 cut(s) 58, 91, 108, 222
AjnI CCWGG 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 166, 179
Aor13HI TCCGGA 1 cut(s) 168
AoxI GGCC 3 cut(s) 193, 198, 255
ApoI RAATTY 1 cut(s) 67
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AsuHPI GGTGA 1 cut(s) 134
AsuNHI GCTAGC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 200
BamHI GGATCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 86
BccI CCATC 1 cut(s) 280
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 158, 210
BlsI GCNGC 2 cut(s) 159, 211
Bme1390I CCNGG 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 197
BmtI GCTAGC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 204, 252
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 2 cut(s) 204, 252
BshFI GGCC 3 cut(s) 195, 200, 257
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 3 cut(s) 195, 200, 257
Bsp1286I GDGCHC 1 cut(s) 86
Bsp13I TCCGGA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 5 cut(s) 134, 157, 160, 209, 251
BspANI GGCC 3 cut(s) 195, 200, 257
BspEI TCCGGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 173
BspOI GCTAGC 1 cut(s) 146
BspPI GGATC 2 cut(s) 166, 179
BsrI ACTGG 2 cut(s) 204, 252
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 197
Bst6I CTCTTC 3 cut(s) 49, 123, 146
BstC8I GCNNGC 1 cut(s) 144
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 3 cut(s) 195, 200, 257
BtgZI GCGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 144
CviAII CATG 1 cut(s) 188
CviJI RGCY 7 cut(s) 84, 119, 142, 195, 200, 257, 269
CviKI_1 RGCY 7 cut(s) 84, 119, 142, 195, 200, 257, 269
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 3 cut(s) 49, 123, 146
EarI CTCTTC 3 cut(s) 49, 123, 146
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 191
FaiI YATR 1 cut(s) 189
FatI CATG 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 158, 210
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 158, 210
FspBI CTAG 1 cut(s) 143
GluI GCNGC 2 cut(s) 158, 210
HaeIII GGCC 3 cut(s) 195, 200, 257
HapII CCGG 1 cut(s) 169
Hin1II CATG 1 cut(s) 191
HinfI GANTC 2 cut(s) 26, 165
HpaII CCGG 1 cut(s) 169
HphI GGTGA 1 cut(s) 134
Hpy188III TCNNGA 3 cut(s) 48, 64, 169
Hpy99I CGWCG 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 191
Kpn2I TCCGGA 1 cut(s) 168
Kzo9I GATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 143
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 6 cut(s) 21, 36, 96, 103, 140, 163
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 2 cut(s) 67, 91
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 4 cut(s) 83, 124, 147, 274
Mox20I TGGCCA 1 cut(s) 200
MroI TCCGGA 1 cut(s) 168
MscI TGGCCA 1 cut(s) 200
MseI TTAA 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 171
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 159, 211
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 171
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 2 cut(s) 158, 210
Sau3AI GATC 1 cut(s) 171
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 86
Sse9I AATT 2 cut(s) 67, 91
SsiI CCGC 5 cut(s) 134, 157, 160, 209, 251
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 258
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 67, 91
TauI GCSGC 2 cut(s) 160, 212
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 141, 164
TspRI CASTG 1 cut(s) 211
XapI RAATTY 1 cut(s) 67
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.