Rroxscaffold_2G00113890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018162
Physical Location & Seq
Reverse (-)
39655949 .. 39658701
2753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113890.1

Sequence Viewer

Length: 372 bp
ATGGAAGAAGTGGCCCGAGAGTTAAAGAGGCTGTCACTCCTGTCAGACACGTATCTTACGGTTGCGGTGGTGGGTTTGGCAACAAGGAGGTGGTGGCTCCAAGTCGTAATAATAGATGGGCATGGTGGGCAAGAGACCAGAGCGGTGTTCTTTTTGGGGATGCAGATTAGCTTCTTAGAACTGGTGATGGCTTTGGTGTTGGAGGTGATTCTCATGGCAGTGGACTGCATGCAGAGCCATCGCACCGACGTCAAGCTCCACGGTGAAGGCCCTCGGCGGTGGCGGCGCCGTTTAGTGTTGCGATGTCTCCGAGACTCCTCACACCTCATGATCGGTAGCGGCGACTACGCCGCAAAGCTTTGGAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.11

Weight (kDa)

9.23

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018162)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0141841 RchiOBHm_Chr3g0494761
rosa_laevigata RLG00000003330 RLG00000008543 RLG00000013377
rosa_multiflora Rmu_sc0005167.1_g000016
rosa_roxburghii Rroxscaffold_2G00113890
rosa_samantha Rh1AG474200 Rh5BG541900 Rh6BG134800
rosa_wichuraiana Rw6G043620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 285
AccBSI CCGCTC 1 cut(s) 143
AciI CCGC 6 cut(s) 65, 143, 277, 283, 339, 351
AcyI GRCGYC 2 cut(s) 249, 286
AflIII ACRYGT 1 cut(s) 48
AluBI AGCT 3 cut(s) 171, 256, 358
AluI AGCT 3 cut(s) 171, 256, 358
Alw26I GTCTC 3 cut(s) 128, 306, 311
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 2 cut(s) 12, 268
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 2 cut(s) 13, 269
AsuHPI GGTGA 3 cut(s) 196, 217, 275
AvaI CYCGRG 1 cut(s) 15
BanI GGYRCC 1 cut(s) 285
BccI CCATC 3 cut(s) 110, 181, 246
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BcoDI GTCTC 3 cut(s) 128, 306, 311
BfoI RGCGCY 1 cut(s) 289
BisI GCNGC 3 cut(s) 284, 340, 351
BlsI GCNGC 3 cut(s) 285, 341, 352
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 13, 269
BmiI GGNNCC 2 cut(s) 98, 287
BmsI GCATC 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 249, 286
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 259, 272
Bse1I ACTGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 259, 272
BseGI GGATG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 307
BshFI GGCC 2 cut(s) 14, 270
BshNI GGYRCC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 15
BsmAI GTCTC 3 cut(s) 128, 306, 311
BsnI GGCC 2 cut(s) 14, 270
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 15
Bsp143I GATC 1 cut(s) 330
BspACI CCGC 6 cut(s) 65, 143, 277, 283, 339, 351
BspANI GGCC 2 cut(s) 14, 270
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 98, 287
BspT107I GGYRCC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 259, 272
BssMI GATC 1 cut(s) 330
BssNI GRCGYC 2 cut(s) 249, 286
Bst4CI ACNGT 2 cut(s) 61, 263
BstACI GRCGYC 2 cut(s) 249, 286
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 175
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 3 cut(s) 128, 306, 311
BstMBI GATC 1 cut(s) 330
BstMWI GCNNNNNNNGC 3 cut(s) 127, 234, 283
BstNSI RCATGY 1 cut(s) 232
BsuRI GGCC 2 cut(s) 14, 270
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 2 cut(s) 224, 316
BtsCI GGATG 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 230
CciI TCATGA 1 cut(s) 327
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 2 cut(s) 13, 269
CviAII CATG 4 cut(s) 122, 214, 229, 328
CviJI RGCY 9 cut(s) 14, 31, 97, 171, 191, 237, 256, 270, 358
CviKI_1 RGCY 9 cut(s) 14, 31, 97, 171, 191, 237, 256, 270, 358
DdeI CTNAG 1 cut(s) 175
DinI GGCGCC 1 cut(s) 287
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 269
EgeI GGCGCC 1 cut(s) 287
EheI GGCGCC 1 cut(s) 287
FaeI CATG 4 cut(s) 125, 217, 232, 331
FaiI YATR 4 cut(s) 123, 215, 230, 329
FatI CATG 4 cut(s) 121, 213, 228, 327
Fnu4HI GCNGC 3 cut(s) 284, 340, 351
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 284, 340, 351
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 284, 340, 351
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 2 cut(s) 14, 270
HhaI GCGC 1 cut(s) 288
Hin1I GRCGYC 2 cut(s) 249, 286
Hin1II CATG 4 cut(s) 125, 217, 232, 331
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 208, 314
HphI GGTGA 3 cut(s) 196, 217, 275
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 46, 311
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 61, 263
HpyCH4IV ACGT 2 cut(s) 50, 249
HpyCH4V TGCA 3 cut(s) 163, 228, 232
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 234, 283
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 2 cut(s) 50, 249
Hsp92I GRCGYC 2 cut(s) 249, 286
Hsp92II CATG 4 cut(s) 125, 217, 232, 331
HspAI GCGC 1 cut(s) 286
KasI GGCGCC 1 cut(s) 285
Kzo9I GATC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 102, 261
LpnPI CCDG 3 cut(s) 53, 151, 167
LweI GCATC 1 cut(s) 150
MaeII ACGT 2 cut(s) 50, 249
MaeIII GTNAC 1 cut(s) 33
MalI GATC 1 cut(s) 332
MbiI CCGCTC 1 cut(s) 143
MboI GATC 1 cut(s) 330
MboII GAAGA 1 cut(s) 17
Mly113I GGCGCC 1 cut(s) 286
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 6 cut(s) 21, 81, 196, 282, 328, 335
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 218
MwoI GCNNNNNNNGC 3 cut(s) 127, 234, 283
NarI GGCGCC 1 cut(s) 286
NdeII GATC 1 cut(s) 330
NlaIII CATG 4 cut(s) 125, 217, 232, 331
NlaIV GGNNCC 2 cut(s) 98, 287
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 33
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PagI TCATGA 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 3 cut(s) 285, 341, 352
PleI GAGTC 1 cut(s) 308
PluTI GGCGCC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 308
Ppu21I YACGTR 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 98, 287
PspPI GGNCC 2 cut(s) 13, 269
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 284, 340, 351
Sau3AI GATC 1 cut(s) 330
Sau96I GGNCC 2 cut(s) 13, 269
SchI GAGTC 1 cut(s) 308
SetI ASST 8 cut(s) 53, 92, 173, 207, 252, 258, 327, 360
SfaNI GCATC 1 cut(s) 150
SfoI GGCGCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 218
SphI GCATGC 1 cut(s) 232
SsiI CCGC 6 cut(s) 65, 143, 277, 283, 339, 351
SspDI GGCGCC 1 cut(s) 285
TaaI ACNGT 2 cut(s) 61, 263
TaiI ACGT 2 cut(s) 53, 252
TauI GCSGC 3 cut(s) 286, 342, 353
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
TspRI CASTG 1 cut(s) 225
XceI RCATGY 1 cut(s) 232
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.