Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018162

Physical Location & Seq

Genomic Coordinates Forward (+)

30555990 .. 30558831

Gene Structure 2842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTGGCTTTGGCCACTTTGCCTTGTGGCGGTGGGGCTGGTGATGAAGAGGCGAAATTGCTGTCTAATCCTGAAAGAATCGGACATGGACCAAGCCACAGAGTCCAAGATTCGGAAGCAGCAGACGAGGAGGAGTCCAAAGCAGCAGAGGAGAGCAACCAGGAGTGTGAGTACGATGAAAATGGCGGTCTCGTGATTTGTAGGCTTTCACATAAGAGGAAGGTGACAGTTCAGGTGTTCAAGGGGAAACCATTAGTGTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAAGGAGCTCTCTACTTCTAAAGAGTCATGTTCTGTGGTATTTAGTTCTGAAGTTTGCTGCTTTGTTAGTTACTATTCTATGTATGGACATTTCAAGAAGCTGGATGAAGAGATTAAAAGGGGAGCTGCATCTTTGGAAGTAGAAGCCCAACTATCTCAGACACTTTTACATTATGTTCCTGCAAGGAGGGTGGTAGTCCTTGATCTGTTTGCTGAAGTGAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

172

Amino Acids

18.89

Weight (kDa)

5.32

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	67 - 103	6.8e-10	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018162)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141841 RchiOBHm_Chr3g0494761
rosa_laevigata	RLG00000003330 RLG00000008543 RLG00000013377
rosa_multiflora	Rmu_sc0005167.1_g000016
rosa_roxburghii	Rroxscaffold_2G00113890
rosa_samantha	Rh1AG474200 Rh5BG541900 Rh6BG134800
rosa_wichuraiana	Rw6G043620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	30, 186
AcoI	YGGCCR	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	29, 112
AgsI	TTSAA	2 cut(s)	241, 382
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	3 cut(s)	295, 388, 413
AluI	AGCT	3 cut(s)	295, 388, 413
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	4 cut(s)	119, 143, 345, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	53, 235
AvaII	GGWCC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	4 cut(s)	131, 155, 332, 400
BciT130I	CCWGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	194
BisI	GCNGC	4 cut(s)	120, 144, 346, 414
BlsI	GCNGC	4 cut(s)	121, 145, 347, 415
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 112
BseBI	CCWGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	2 cut(s)	29, 112
BseMII	CTCAG	1 cut(s)	458
BseRI	GAGGAG	3 cut(s)	143, 146, 164
BseXI	GCAGC	4 cut(s)	131, 155, 332, 400
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	29, 112
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	490
BspACI	CCGC	2 cut(s)	30, 186
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	194
BssMI	GATC	1 cut(s)	490
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	229, 513
Bst6I	CTCTTC	2 cut(s)	42, 390
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	131, 155, 332, 400
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviAII	CATG	2 cut(s)	86, 315
CviJI	RGCY	9 cut(s)	8, 14, 38, 96, 205, 295, 388, 413, 434
CviKI_1	RGCY	9 cut(s)	8, 14, 38, 96, 205, 295, 388, 413, 434
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	42, 390
EarI	CTCTTC	2 cut(s)	42, 390
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	2 cut(s)	89, 318
FaiI	YATR	6 cut(s)	87, 213, 316, 368, 372, 462
FatI	CATG	2 cut(s)	85, 314
Fnu4HI	GCNGC	4 cut(s)	120, 144, 346, 414
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	4 cut(s)	120, 144, 346, 414
GluI	GCNGC	4 cut(s)	120, 144, 346, 414
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	89, 318
HinfI	GANTC	5 cut(s)	78, 102, 110, 134, 311
HphI	GGTGA	2 cut(s)	53, 235
Hpy188I	TCNGA	4 cut(s)	83, 115, 337, 447
Hpy188III	TCNNGA	3 cut(s)	71, 193, 382
HpyAV	CCTTC	2 cut(s)	214, 278
HpyCH4III	ACNGT	2 cut(s)	229, 513
HpyCH4V	TGCA	2 cut(s)	416, 470
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	89, 318
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	2 cut(s)	292, 410
LpnPI	CCDG	7 cut(s)	24, 84, 146, 173, 218, 374, 480
Lsp1109I	GCAGC	4 cut(s)	131, 155, 332, 400
LweI	GCATC	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	223, 356
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	2 cut(s)	59, 407
MhlI	GDGCHC	1 cut(s)	297
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	3 cut(s)	111, 143, 320
MnlI	CCTC	7 cut(s)	43, 121, 124, 142, 210, 258, 468
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	2 cut(s)	89, 318
NmuCI	GTSAC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	78, 110
PkrI	GCNGC	4 cut(s)	121, 145, 347, 415
PleI	GAGTC	3 cut(s)	110, 142, 319
PpsI	GAGTC	3 cut(s)	110, 142, 319
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	4 cut(s)	120, 144, 346, 414
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	3 cut(s)	111, 143, 320
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	5 cut(s)	225, 237, 297, 390, 415
SfaNI	GCATC	1 cut(s)	425
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	2 cut(s)	30, 186
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	229, 513
TasI	AATT	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	78, 110
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	4 cut(s)	119, 143, 345, 413
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	60, 192, 408
VpaK11BI	GGWCC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.