RLG00000008543

RNA polymerase II transcriptional coactivator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018162
Physical Location & Seq
Reverse (-)
31808375 .. 31810607
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008543

Sequence Viewer

Length: 411 bp
ATGGACCAAGCCACAGAGTCCAAGATTCGGAAGCAGCAAACGACGAGGAGTCCAAAGCAGCAGAGGAGAGCAACCAGGAGCCTTTCGCATAAGAGGAAGATGACAGTTCAGGTGTTCAAGGGGAAACCATTGGTGTCGTTGAGGGAGTTTTTTACTAAAGAAGGCACGGAGCACCCTACTTCTAAAGAGTCATGTTCCGTGGTATTTAGTTCTGAAGTTTGCTGCTTTGTTAGTTACTATTCTATGTATGGACATTTCAAGAAGCTGGATGAAGAGATTAAAAGGGGAGCTGCATCTTTGGAAGTAGAAGCCCAACTATCTCAGACACTTTTGCATTATGTTCCTGCAGGGAGGGTGGTAGTCCTTGATCTGTTTGCTGAAGTGAAACTGATATGTGAATTGAACTTGTAG

Protein Analysis

137

Amino Acids

15.56

Weight (kDa)

9.36

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC4 PF02229 27 - 62 5.9e-10 Transcriptional Coactivator p15 (PC4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018162)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0141841 RchiOBHm_Chr3g0494761
rosa_laevigata RLG00000003330 RLG00000008543 RLG00000013377
rosa_multiflora Rmu_sc0005167.1_g000016
rosa_roxburghii Rroxscaffold_2G00113890
rosa_samantha Rh1AG474200 Rh5BG541900 Rh6BG134800
rosa_wichuraiana Rw6G043620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 234, 399
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 3 cut(s) 118, 259, 403
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 2 cut(s) 265, 290
AluI AGCT 2 cut(s) 265, 290
Alw21I GWGCWC 1 cut(s) 174
ApeKI GCWGC 4 cut(s) 34, 58, 222, 290
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 46, 70, 209, 277
BciT130I CCWGG 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 345
BisI GCNGC 4 cut(s) 35, 59, 223, 291
BlsI GCNGC 4 cut(s) 36, 60, 224, 292
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 4
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 61, 79
BseXI GCAGC 4 cut(s) 46, 70, 209, 277
BsiHKAI GWGCWC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 367
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 80
BspMAI CTGCAG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 4 cut(s) 46, 70, 209, 277
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 192
CviJI RGCY 5 cut(s) 11, 81, 265, 290, 311
CviKI_1 RGCY 5 cut(s) 11, 81, 265, 290, 311
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 267
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 234, 399
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 195
FaiI YATR 6 cut(s) 90, 193, 245, 249, 339, 394
FatI CATG 1 cut(s) 191
Fnu4HI GCNGC 4 cut(s) 35, 59, 223, 291
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 4 cut(s) 35, 59, 223, 291
GluI GCNGC 4 cut(s) 35, 59, 223, 291
Hin1II CATG 1 cut(s) 195
HinfI GANTC 4 cut(s) 17, 25, 49, 188
Hpy188I TCNGA 3 cut(s) 30, 214, 324
Hpy188III TCNNGA 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 293, 334, 347
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 1 cut(s) 195
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 3 cut(s) 78, 169, 287
LpnPI CCDG 6 cut(s) 61, 88, 95, 251, 333, 357
Lsp1109I GCAGC 4 cut(s) 46, 70, 209, 277
LweI GCATC 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 2 cut(s) 109, 284
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 398
MlyI GAGTC 3 cut(s) 26, 58, 197
MnlI CCTC 5 cut(s) 39, 57, 87, 135, 345
MseI TTAA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 4 cut(s) 36, 60, 224, 292
PleI GAGTC 3 cut(s) 25, 57, 196
PpsI GAGTC 3 cut(s) 25, 57, 196
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 349
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 35, 59, 223, 291
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 4
SbfI CCTGCAGG 1 cut(s) 349
SchI GAGTC 3 cut(s) 26, 58, 197
ScrFI CCNGG 1 cut(s) 76
SdaI CCTGCAGG 1 cut(s) 349
SduI GDGCHC 1 cut(s) 174
SetI ASST 3 cut(s) 114, 267, 292
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 4
Sse8387I CCTGCAGG 1 cut(s) 349
Sse9I AATT 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 106
TasI AATT 1 cut(s) 398
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseI GCWGC 4 cut(s) 34, 58, 222, 290
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 2 cut(s) 182, 187
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.