RLG00000003416

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015631
Physical Location & Seq
Forward (+)
48213357 .. 48214005
649 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003416

Sequence Viewer

Length: 507 bp
ATGGGTGACAAACCTCCATTAATTATCATCAAACATTGCCAAGAGACTAATGTGCAAAAACCAATAGCTGTTCTGGGAGTCAAGCCCGCGTATGCTTCATGGTGGAGGGGAAAAGTTGCCAACAAGTCTAAACCAAATGGAGGCATGAGTCCAATAAAAAGGCAACCAGAAAGATCTCAAAATGACTCGAACAATATTAGAGGACATACTAGTGATACTACTCACTTTGGTGATGCTGCTGCTGCTAGCCTTCGTGATAACAACGAATCTGTTATCCGAAAGAAAGCAAACAAATCATGGGATCCGGGTGTCGAAGTTGATGATAAGTTTCATTACAGAATGGAGCTTACTATTGTCGGTTTACATCGCGGACTTGCATATTTTGGTAGGGAATCACTTGCAACCAGTATTGTAGCATCTAGAGGATATGCCGATAATTTCCATGATTTGAACTCATTGACTTACACCGGTCATGGAGGGTCATGGAGGAAGTGTGATGCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

169

Amino Acids

18.59

Weight (kDa)

9.51

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 102 - 161 7.8e-12 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 89, 369
AciI CCGC 2 cut(s) 87, 369
AclWI GGATC 2 cut(s) 296, 309
AfiI CCNNNNNNNGG 1 cut(s) 140
AgeI ACCGGT 1 cut(s) 467
AgsI TTSAA 1 cut(s) 451
AhlI ACTAGT 1 cut(s) 209
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 2 cut(s) 68, 346
AluI AGCT 2 cut(s) 68, 346
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 2 cut(s) 296, 309
ApeKI GCWGC 3 cut(s) 236, 239, 242
AseI ATTAAT 1 cut(s) 20
AsiGI ACCGGT 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 17, 242
AsuNHI GCTAGC 1 cut(s) 245
BamHI GGATCC 1 cut(s) 301
BbvI GCAGC 3 cut(s) 223, 226, 229
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 3 cut(s) 210, 246, 420
BglII AGATCT 1 cut(s) 173
BisI GCNGC 3 cut(s) 237, 240, 243
BlsI GCNGC 3 cut(s) 238, 241, 244
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 3 cut(s) 223, 425, 487
BmtI GCTAGC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 467
BsaXI ACNNNNNCTCC 1 cut(s) 478
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 405
BseXI GCAGC 3 cut(s) 223, 226, 229
Bsh1236I CGCG 2 cut(s) 89, 369
BshTI ACCGGT 1 cut(s) 467
BsiSI CCGG 2 cut(s) 305, 468
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 173, 301
BspACI CCGC 2 cut(s) 87, 369
BspFNI CGCG 2 cut(s) 89, 369
BspLI GGNNCC 1 cut(s) 303
BspOI GCTAGC 1 cut(s) 249
BspPI GGATC 2 cut(s) 296, 309
BsrDI GCAATG 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 467
BssMI GATC 2 cut(s) 173, 301
BstC8I GCNNGC 2 cut(s) 87, 247
BstFNI CGCG 2 cut(s) 89, 369
BstKTI GATC 2 cut(s) 176, 304
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 173, 301
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 2 cut(s) 89, 369
BstV1I GCAGC 3 cut(s) 223, 226, 229
BstX2I RGATCY 2 cut(s) 173, 301
BstYI RGATCY 2 cut(s) 173, 301
BtgZI GCGATG 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 87, 247
Cfr10I RCCGGY 1 cut(s) 467
CspAI ACCGGT 1 cut(s) 467
CviAII CATG 6 cut(s) 99, 145, 297, 443, 473, 483
CviJI RGCY 4 cut(s) 68, 85, 249, 346
CviKI_1 RGCY 4 cut(s) 68, 85, 249, 346
DpnI GATC 2 cut(s) 175, 303
DpnII GATC 2 cut(s) 173, 301
EcoT22I ATGCAT 1 cut(s) 502
FaeI CATG 6 cut(s) 102, 148, 300, 446, 476, 486
FatI CATG 6 cut(s) 98, 144, 296, 442, 472, 482
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 237, 240, 243
Fsp4HI GCNGC 3 cut(s) 237, 240, 243
FspBI CTAG 3 cut(s) 210, 246, 420
GluI GCNGC 3 cut(s) 237, 240, 243
HapII CCGG 2 cut(s) 305, 468
Hin1II CATG 6 cut(s) 102, 148, 300, 446, 476, 486
HinfI GANTC 5 cut(s) 78, 148, 185, 266, 392
HpaII CCGG 2 cut(s) 305, 468
HphI GGTGA 2 cut(s) 17, 242
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 2 cut(s) 254, 420
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 260
HpyCH4V TGCA 4 cut(s) 55, 377, 401, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 6 cut(s) 102, 148, 300, 446, 476, 486
Kzo9I GATC 2 cut(s) 173, 301
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 5 cut(s) 59, 180, 318, 418, 481
Lsp1109I GCAGC 3 cut(s) 223, 226, 229
LweI GCATC 3 cut(s) 223, 425, 487
MaeI CTAG 3 cut(s) 210, 246, 420
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 175, 303
MboI GATC 2 cut(s) 173, 301
MflI RGATCY 2 cut(s) 173, 301
MluCI AATT 2 cut(s) 21, 436
MlyI GAGTC 3 cut(s) 87, 157, 179
MnlI CCTC 7 cut(s) 24, 99, 134, 194, 416, 470, 480
Mph1103I ATGCAT 1 cut(s) 502
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 2 cut(s) 210, 228
MspI CCGG 2 cut(s) 305, 468
MspR9I CCNGG 1 cut(s) 306
MvnI CGCG 2 cut(s) 89, 369
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 306
NdeII GATC 2 cut(s) 173, 301
NheI GCTAGC 1 cut(s) 245
NlaIII CATG 6 cut(s) 102, 148, 300, 446, 476, 486
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 228
PfeI GAWTC 2 cut(s) 266, 392
PinAI ACCGGT 1 cut(s) 467
PkrI GCNGC 3 cut(s) 238, 241, 244
PleI GAGTC 3 cut(s) 86, 156, 179
PpsI GAGTC 3 cut(s) 86, 156, 179
PshBI ATTAAT 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 303
PsuI RGATCY 2 cut(s) 173, 301
RseI CAYNNNNRTG 2 cut(s) 210, 228
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 237, 240, 243
Sau3AI GATC 2 cut(s) 173, 301
SchI GAGTC 3 cut(s) 87, 157, 179
ScrFI CCNGG 1 cut(s) 306
SetI ASST 3 cut(s) 16, 70, 348
SfaNI GCATC 3 cut(s) 223, 425, 487
SmiMI CAYNNNNRTG 2 cut(s) 210, 228
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 2 cut(s) 21, 436
SsiI CCGC 2 cut(s) 87, 369
SspI AATATT 1 cut(s) 196
SspMI CTAG 3 cut(s) 210, 246, 420
StyD4I CCNGG 1 cut(s) 304
TaqI TCGA 2 cut(s) 188, 312
TasI AATT 2 cut(s) 21, 436
TfiI GAWTC 2 cut(s) 266, 392
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 236, 239, 242
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 87, 320
VspI ATTAAT 1 cut(s) 20
XbaI TCTAGA 1 cut(s) 419
XspI CTAG 3 cut(s) 210, 246, 420
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.