Rh7BG224300

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015631
Physical Location & Seq
Forward (+)
19329918 .. 19331271
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG224300.1

Sequence Viewer

Length: 714 bp
ATGAACCTACTCAGAGGCTGGAAGTCGCAAGACACGGGAGGCAGATCTTCATTTTGCCATCCCCCACTGTCTCTATGTCAGGTTATGGGTGACAAACCTCTATTATCATCAAACATTGCCAAGACTAATGTGCAAAAACCAATATCTGTGCCGGGAGTCAAGCTTGTGTATGCTTCATGGTGGAGGGGAAAAGTTGCCTGCAAGTCTAAACCAAATGGAGGCATGAGTCCAATAAAAAGGCAACTTGAAATAAATCTTCAACCAGAAAGATCTCAAAATGACTCAGACAATATTAGAGGACAGACTACTCACTTTGGTAATGCTGCTGCTAGCCTTCGTGATAACAACGAATCTGTTATCCGAAAGAAATTGAAAGAGACATTGGCTCGATTCAAAGATATTTGTATCGAGATAGAGAGTAAAGGGTCAAGGGAAGGAGCAACTTCTCCCAGAAGGATAGATTATAAAGCTGCAAAGATCCTTAAGAAGGAGAGAGGATATGTTAATATAGGCAAACAAATCATGGGATCAGGGGAATCACTTGCAACCAGTATTGTAGCATCTGGAGGATATGCTGATAATTTCCATGATTTGAACTCCTTGACTTACACCGGTCATGGAGGAAGTGTAATGCATCATAGGTTCCCAGAAGATCAAGAGCTTAAACGTGGAAACCTTGCTATAAAGAATAGTCCGGACGCGAAATCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

237

Amino Acids

26.04

Weight (kDa)

9.75

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 172 - 234 5.8e-12 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccII CGCG 1 cut(s) 701
AccIII TCCGGA 1 cut(s) 694
AclWI GGATC 2 cut(s) 472, 535
AfiI CCNNNNNNNGG 2 cut(s) 218, 487
AflII CTTAAG 1 cut(s) 482
AgeI ACCGGT 1 cut(s) 611
AgsI TTSAA 5 cut(s) 248, 260, 373, 394, 595
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 3 cut(s) 163, 470, 661
AluI AGCT 3 cut(s) 163, 470, 661
Alw26I GTCTC 2 cut(s) 75, 371
AlwI GGATC 2 cut(s) 472, 535
AlwNI CAGNNNCTG 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 694
ApeKI GCWGC 3 cut(s) 323, 326, 470
AsiGI ACCGGT 1 cut(s) 611
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 310, 313, 457
BccI CCATC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 75, 371
BfaI CTAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 482
BglII AGATCT 2 cut(s) 44, 269
BisI GCNGC 3 cut(s) 324, 327, 471
BlsI GCNGC 3 cut(s) 325, 328, 472
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 644
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 569, 643
BmtI GCTAGC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 153
BsaWI WCCGGW 2 cut(s) 611, 694
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 487
Bse118I RCCGGY 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 694
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 218, 487
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 25, 297
BseNI ACTGG 1 cut(s) 549
BseXI GCAGC 3 cut(s) 310, 313, 457
Bsh1236I CGCG 1 cut(s) 701
BshTI ACCGGT 1 cut(s) 611
BsiSI CCGG 3 cut(s) 152, 612, 695
BslI CCNNNNNNNGG 2 cut(s) 218, 487
BsmAI GTCTC 2 cut(s) 75, 371
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 5 cut(s) 44, 269, 477, 527, 652
BspCNI CTCAG 2 cut(s) 24, 296
BspEI TCCGGA 1 cut(s) 694
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 1 cut(s) 644
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 2 cut(s) 472, 535
BspTI CTTAAG 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 611
BsrI ACTGG 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 611
BssMI GATC 5 cut(s) 44, 269, 477, 527, 652
Bst4CI ACNGT 1 cut(s) 69
BstAFI CTTAAG 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 199, 331
BstDEI CTNAG 2 cut(s) 11, 283
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 701
BstKTI GATC 5 cut(s) 47, 272, 480, 530, 655
BstMAI GTCTC 2 cut(s) 75, 371
BstMBI GATC 5 cut(s) 44, 269, 477, 527, 652
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 3 cut(s) 310, 313, 457
BstX2I RGATCY 3 cut(s) 44, 269, 477
BstYI RGATCY 3 cut(s) 44, 269, 477
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 199, 331
CaiI CAGNNNCTG 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 611
CseI GACGC 1 cut(s) 707
CspAI ACCGGT 1 cut(s) 611
CviAII CATG 5 cut(s) 177, 223, 523, 587, 617
CviJI RGCY 6 cut(s) 18, 163, 333, 386, 470, 661
CviKI_1 RGCY 6 cut(s) 18, 163, 333, 386, 470, 661
DdeI CTNAG 2 cut(s) 11, 283
DpnI GATC 5 cut(s) 46, 271, 479, 529, 654
DpnII GATC 5 cut(s) 44, 269, 477, 527, 652
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoT22I ATGCAT 1 cut(s) 636
FaeI CATG 5 cut(s) 180, 226, 526, 590, 620
FatI CATG 5 cut(s) 176, 222, 522, 586, 616
Fnu4HI GCNGC 3 cut(s) 324, 327, 471
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 3 cut(s) 324, 327, 471
FspBI CTAG 1 cut(s) 330
GluI GCNGC 3 cut(s) 324, 327, 471
GsuI CTGGAG 1 cut(s) 585
HapII CCGG 3 cut(s) 152, 612, 695
HgaI GACGC 1 cut(s) 707
Hin1II CATG 5 cut(s) 180, 226, 526, 590, 620
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 6 cut(s) 156, 226, 281, 350, 390, 536
HpaII CCGG 3 cut(s) 152, 612, 695
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 3 cut(s) 14, 286, 362
Hpy188III TCNNGA 5 cut(s) 338, 409, 564, 656, 695
HpyAV CCTTC 4 cut(s) 344, 428, 447, 481
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 5 cut(s) 133, 201, 473, 545, 634
HpyF3I CTNAG 2 cut(s) 11, 283
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 5 cut(s) 180, 226, 526, 590, 620
Kpn2I TCCGGA 1 cut(s) 694
Kzo9I GATC 5 cut(s) 44, 269, 477, 527, 652
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 3 cut(s) 310, 313, 457
LweI GCATC 2 cut(s) 569, 643
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 89
MalI GATC 5 cut(s) 46, 271, 479, 529, 654
MboI GATC 5 cut(s) 44, 269, 477, 527, 652
MboII GAAGA 3 cut(s) 39, 248, 662
MflI RGATCY 3 cut(s) 44, 269, 477
MluCI AATT 2 cut(s) 368, 580
MlyI GAGTC 3 cut(s) 165, 235, 275
MnlI CCTC 9 cut(s) 8, 32, 108, 177, 212, 290, 488, 560, 614
Mph1103I ATGCAT 1 cut(s) 636
MroI TCCGGA 1 cut(s) 694
MseI TTAA 3 cut(s) 483, 504, 663
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 3 cut(s) 152, 612, 695
MspR9I CCNGG 1 cut(s) 153
MvnI CGCG 1 cut(s) 701
NciI CCSGG 1 cut(s) 153
NdeII GATC 5 cut(s) 44, 269, 477, 527, 652
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 5 cut(s) 180, 226, 526, 590, 620
NlaIV GGNNCC 1 cut(s) 644
NmuCI GTSAC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 636
PfeI GAWTC 3 cut(s) 350, 390, 536
PinAI ACCGGT 1 cut(s) 611
PkrI GCNGC 3 cut(s) 325, 328, 472
PleI GAGTC 3 cut(s) 164, 234, 275
PpsI GAGTC 3 cut(s) 164, 234, 275
PsiI TTATAA 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 644
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 3 cut(s) 44, 269, 477
SaqAI TTAA 3 cut(s) 483, 504, 663
SatI GCNGC 3 cut(s) 324, 327, 471
Sau3AI GATC 5 cut(s) 44, 269, 477, 527, 652
SchI GAGTC 3 cut(s) 165, 235, 275
ScrFI CCNGG 1 cut(s) 153
SetI ASST 9 cut(s) 9, 84, 100, 165, 472, 644, 663, 670, 678
SfaNI GCATC 2 cut(s) 569, 643
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 2 cut(s) 368, 580
SspI AATATT 1 cut(s) 292
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 1 cut(s) 670
TaqI TCGA 2 cut(s) 388, 408
TasI AATT 2 cut(s) 368, 580
TfiI GAWTC 3 cut(s) 350, 390, 536
Tru1I TTAA 3 cut(s) 483, 504, 663
Tru9I TTAA 3 cut(s) 483, 504, 663
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 3 cut(s) 323, 326, 470
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 17, 39, 165
TspRI CASTG 1 cut(s) 72
Vha464I CTTAAG 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 485
XspI CTAG 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.